Wall clock time and date at job start Wed Apr 1 2020 04:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37971 * 120.07755 * 2 1 4 4 C 1.38339 * 120.14684 * 179.97438 * 3 2 1 5 5 C 1.38383 * 120.29418 * 0.02562 * 4 3 2 6 6 C 1.37932 * 120.14338 * 359.97438 * 5 4 3 7 7 C 1.39564 * 120.06967 * 179.97438 * 2 1 3 8 8 C 1.47845 * 120.14706 * 0.02562 * 7 2 1 9 9 O 1.21548 * 119.99841 * 354.35581 * 8 7 2 10 10 N 1.34776 * 120.00142 * 174.35877 * 8 7 2 11 11 C 1.46497 * 120.00043 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46945 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.47229 * 65.00711 * 12 11 10 14 14 N 1.46894 * 109.47594 * 305.00313 * 12 11 10 15 15 C 1.46900 * 111.00227 * 158.30021 * 14 12 11 16 16 C 1.50696 * 109.47086 * 185.45396 * 15 14 12 17 17 O 1.21294 * 120.00256 * 0.02562 * 16 15 14 18 18 N 1.34781 * 120.00072 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99961 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00289 * 0.02562 * 19 18 16 21 21 C 1.38956 * 119.99781 * 179.97438 * 19 18 16 22 22 N 1.31417 * 120.00012 * 0.02562 * 21 19 18 23 23 Si 1.86790 * 120.00109 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47299 * 60.00032 * 23 21 19 25 25 H 1.48500 * 109.47368 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47450 * 299.99948 * 23 21 19 27 27 C 1.53002 * 109.47019 * 185.00144 * 12 11 10 28 28 C 1.53002 * 109.47363 * 295.84497 * 27 12 11 29 29 C 1.53001 * 109.46828 * 55.84503 * 27 12 11 30 30 H 1.08992 * 109.47181 * 263.76538 * 1 2 3 31 31 H 1.08998 * 109.47122 * 23.76602 * 1 2 3 32 32 H 1.09003 * 109.47190 * 143.76483 * 1 2 3 33 33 H 1.08004 * 119.92813 * 359.97438 * 3 2 1 34 34 H 1.08006 * 119.85083 * 180.02562 * 4 3 2 35 35 H 1.07994 * 119.92753 * 180.27190 * 5 4 3 36 36 H 1.07998 * 120.07563 * 180.02562 * 6 5 4 37 37 H 0.97001 * 119.99878 * 359.97438 * 10 8 7 38 38 H 1.08996 * 109.47341 * 300.00361 * 11 10 8 39 39 H 1.08999 * 109.46607 * 60.00142 * 11 10 8 40 40 H 1.00900 * 111.00234 * 282.26124 * 14 12 11 41 41 H 1.08992 * 109.47118 * 305.46141 * 15 14 12 42 42 H 1.09001 * 109.46936 * 65.46193 * 15 14 12 43 43 H 0.97001 * 119.99578 * 0.02562 * 18 16 15 44 44 H 0.96996 * 119.99916 * 180.02562 * 22 21 19 45 45 H 1.08996 * 109.47595 * 175.84295 * 27 12 11 46 46 H 1.09002 * 109.46717 * 56.69012 * 28 27 12 47 47 H 1.08998 * 109.47091 * 176.68852 * 28 27 12 48 48 H 1.08998 * 109.47280 * 296.69187 * 28 27 12 49 49 H 1.08995 * 109.47552 * 60.00202 * 29 27 12 50 50 H 1.09004 * 109.46938 * 180.02562 * 29 27 12 51 51 H 1.09000 * 109.47080 * 299.99521 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5818 1.1956 0.0005 5 6 4.2813 0.0016 0.0005 6 6 3.6023 -1.1990 0.0005 7 6 2.2063 -1.2078 0.0005 8 6 1.4719 -2.4910 0.0005 9 8 0.2608 -2.4980 0.1036 10 7 2.1453 -3.6528 -0.1137 11 6 1.4176 -4.9243 -0.1131 12 6 2.4102 -6.0800 -0.2550 13 1 3.0541 -6.1159 0.6238 14 7 3.2314 -5.8756 -1.4557 15 6 4.4896 -6.6286 -1.3674 16 6 5.3612 -6.2909 -2.5495 17 8 4.9726 -5.5002 -3.3833 18 7 6.5724 -6.8673 -2.6803 19 6 7.3655 -6.5596 -3.7554 20 1 7.0199 -5.8551 -4.4974 21 6 8.6145 -7.1536 -3.8900 22 7 9.0353 -8.0106 -2.9869 23 14 9.6948 -6.7350 -5.3551 24 1 9.9881 -5.2792 -5.3541 25 1 10.9670 -7.4957 -5.2656 26 1 8.9886 -7.0967 -6.6104 27 6 1.6436 -7.3982 -0.3798 28 6 0.8692 -7.6623 0.9131 29 6 0.6642 -7.3096 -1.5518 30 1 -0.3633 -0.1116 1.0215 31 1 -0.3633 0.9405 -0.4141 32 1 -0.3634 -0.8289 -0.6075 33 1 1.6585 2.1293 -0.0004 34 1 4.1183 2.1330 0.0010 35 1 5.3612 0.0098 0.0054 36 1 4.1493 -2.1302 0.0010 37 1 3.1118 -3.6472 -0.1962 38 1 0.8693 -5.0287 0.8231 39 1 0.7175 -4.9425 -0.9483 40 1 2.7201 -6.1223 -2.2898 41 1 5.0080 -6.3632 -0.4461 42 1 4.2744 -7.6972 -1.3684 43 1 6.8830 -7.4999 -2.0137 44 1 9.9073 -8.4249 -3.0806 45 1 2.3469 -8.2124 -0.5547 46 1 0.2082 -6.8203 1.1191 47 1 0.2770 -8.5707 0.8029 48 1 1.5707 -7.7838 1.7385 49 1 1.2158 -7.1216 -2.4729 50 1 0.1177 -8.2486 -1.6404 51 1 -0.0392 -6.4955 -1.3768 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753822174.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:50 Heat of formation + Delta-G solvation = -55.380502 kcal Electronic energy + Delta-G solvation = -30572.421292 eV Core-core repulsion = 26471.173033 eV Total energy + Delta-G solvation = -4101.248259 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.41159 -39.10000 -38.20046 -37.58011 -34.44407 -34.06155 -33.09982 -32.58421 -31.43251 -31.21994 -28.60179 -27.46508 -27.05673 -26.03330 -24.30085 -23.56920 -23.01764 -21.52996 -20.48367 -19.49977 -19.31910 -17.95811 -17.64853 -16.73602 -16.00369 -15.84620 -15.53720 -15.35230 -15.11186 -15.00677 -14.58772 -14.53876 -14.20325 -13.97973 -13.90059 -13.56467 -13.36365 -13.22564 -13.16175 -13.02344 -12.39214 -12.29558 -12.13645 -12.11976 -12.00983 -11.85356 -11.81675 -11.59994 -11.52336 -11.21183 -11.17388 -11.01192 -10.91161 -10.58436 -10.46634 -10.23957 -9.57599 -9.52515 -9.15840 -8.93904 -8.71079 -8.54262 -8.09184 -7.98860 -6.44577 -3.85455 0.79647 1.24884 2.89210 3.17817 3.23670 3.23923 3.28170 3.78618 3.87578 4.02683 4.26777 4.60640 4.61147 4.68685 4.76345 4.77749 4.88189 4.94154 5.11352 5.11984 5.18996 5.21252 5.24540 5.35195 5.42799 5.52010 5.54662 5.62851 5.70545 5.72911 5.74357 5.76840 5.78129 5.81115 5.87522 5.90385 5.95024 6.11700 6.14176 6.19473 6.21515 6.24236 6.32765 6.46002 6.59551 6.78964 7.10837 7.52272 7.55823 7.64151 8.03104 8.29682 8.58342 9.15200 9.51333 10.02897 10.73030 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008221 B = 0.002912 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3404.903727 B = 9612.532353 C =12415.755218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.026 4.026 3 C -0.136 4.136 4 C -0.092 4.092 5 C -0.134 4.134 6 C -0.076 4.076 7 C -0.139 4.139 8 C 0.556 3.444 9 O -0.544 6.544 10 N -0.707 5.707 11 C 0.130 3.870 12 C 0.076 3.924 13 H 0.085 0.915 14 N -0.662 5.662 15 C 0.049 3.951 16 C 0.440 3.560 17 O -0.581 6.581 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C -0.125 4.125 28 C -0.147 4.147 29 C -0.155 4.155 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.409 0.591 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.352 0.648 41 H 0.085 0.915 42 H 0.045 0.955 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.076 0.924 46 H 0.059 0.941 47 H 0.054 0.946 48 H 0.055 0.945 49 H 0.059 0.941 50 H 0.056 0.944 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.688 8.430 11.060 19.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.027 4.027 3 C -0.154 4.154 4 C -0.111 4.111 5 C -0.152 4.152 6 C -0.094 4.094 7 C -0.142 4.142 8 C 0.344 3.656 9 O -0.425 6.425 10 N -0.358 5.358 11 C 0.006 3.994 12 C -0.035 4.035 13 H 0.103 0.897 14 N -0.295 5.295 15 C -0.084 4.084 16 C 0.225 3.775 17 O -0.465 6.465 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.145 4.145 28 C -0.205 4.205 29 C -0.213 4.213 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.246 0.754 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.174 0.826 41 H 0.103 0.897 42 H 0.063 0.937 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.074 0.926 49 H 0.078 0.922 50 H 0.075 0.925 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.326 9.400 10.779 20.243 hybrid contribution 1.239 -1.263 -0.510 1.842 sum -13.086 8.136 10.270 18.518 Atomic orbital electron populations 1.21079 0.90161 1.02960 1.03447 1.20044 0.96806 0.91536 0.94321 1.21036 0.94279 0.97413 1.02693 1.21345 0.94257 0.98293 0.97163 1.21123 1.00406 0.92165 1.01529 1.21400 0.92993 0.98922 0.96118 1.19819 0.93633 0.93268 1.07438 1.18237 0.87003 0.83806 0.76553 1.90682 1.13669 1.87307 1.50797 1.45770 1.11711 1.05127 1.73207 1.21469 0.94151 0.81800 1.01962 1.21923 0.94176 0.92553 0.94850 0.89689 1.60188 1.05185 1.59977 1.04153 1.21718 0.91407 0.95976 0.99280 1.19801 0.83546 0.85680 0.88437 1.90538 1.73702 1.37735 1.44488 1.41859 1.14408 1.39809 1.23973 1.19646 0.96923 1.24342 1.02009 0.87998 1.25251 0.97632 0.96278 0.98711 1.69603 1.20949 1.28814 1.34989 0.85931 0.78722 0.78619 0.81045 1.19874 1.20982 1.19918 1.21769 0.98152 0.98314 0.96314 1.21864 1.00178 1.01779 0.96697 1.21963 0.99290 1.02133 0.97895 0.90917 0.92688 0.88500 0.85608 0.85724 0.85340 0.85277 0.75395 0.91129 0.90992 0.82581 0.89669 0.93697 0.77523 0.91819 0.90589 0.92207 0.92641 0.92597 0.92240 0.92461 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 8.76 36.00 0.32 -1.05 16 2 C -0.03 -0.32 5.91 -104.23 -0.62 -0.93 16 3 C -0.14 -1.39 9.66 -39.64 -0.38 -1.77 16 4 C -0.09 -0.89 10.04 -39.49 -0.40 -1.29 16 5 C -0.13 -1.42 10.03 -39.64 -0.40 -1.82 16 6 C -0.08 -0.90 9.53 -39.18 -0.37 -1.27 16 7 C -0.14 -1.81 5.87 -104.96 -0.62 -2.43 16 8 C 0.56 7.86 7.71 -12.33 -0.10 7.76 16 9 O -0.54 -8.68 13.32 5.32 0.07 -8.61 16 10 N -0.71 -8.99 5.34 -61.26 -0.33 -9.32 16 11 C 0.13 1.51 4.68 -4.04 -0.02 1.49 16 12 C 0.08 0.83 1.97 -67.72 -0.13 0.70 16 13 H 0.08 0.88 7.77 -51.93 -0.40 0.48 16 14 N -0.66 -9.46 5.21 -108.00 -0.56 -10.03 16 15 C 0.05 0.78 5.97 -4.98 -0.03 0.75 16 16 C 0.44 9.85 7.83 -10.99 -0.09 9.76 16 17 O -0.58 -15.16 15.90 5.55 0.09 -15.07 16 18 N -0.56 -13.78 5.29 -10.96 -0.06 -13.83 16 19 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 20 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 21 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 22 N -0.90 -24.11 13.05 55.50 0.72 -23.39 16 23 Si 0.93 20.78 29.55 -169.99 -5.02 15.75 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 C -0.12 -1.21 2.78 -90.62 -0.25 -1.46 16 28 C -0.15 -1.22 9.01 37.16 0.33 -0.89 16 29 C -0.16 -1.54 8.52 37.16 0.32 -1.22 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.50 8.04 -51.93 -0.42 0.08 16 32 H 0.10 1.30 5.81 -51.93 -0.30 1.00 16 33 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 35 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.13 1.42 6.45 -52.49 -0.34 1.08 16 37 H 0.41 5.12 6.21 -40.82 -0.25 4.87 16 38 H 0.07 0.78 6.72 -51.93 -0.35 0.43 16 39 H 0.07 0.90 6.07 -51.93 -0.32 0.59 16 40 H 0.35 5.42 6.47 -39.29 -0.25 5.17 16 41 H 0.09 1.23 7.93 -51.93 -0.41 0.81 16 42 H 0.05 0.66 7.31 -51.93 -0.38 0.28 16 43 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 44 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.08 0.79 7.25 -51.93 -0.38 0.41 16 46 H 0.06 0.49 6.50 -51.93 -0.34 0.15 16 47 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.06 0.66 6.42 -51.93 -0.33 0.32 16 50 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.06 0.61 6.25 -51.93 -0.32 0.29 16 LS Contribution 407.73 15.07 6.14 6.14 Total: -1.00 -31.63 407.73 -9.20 -40.83 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: -7.59 Total: 18.98 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -2.67 Total: -1.47 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -0.22 Total: -56.56 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: 0.16 Total: -23.68 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.63 -9.20 -40.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753822174.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.547 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds