Wall clock time and date at job start Wed Apr 1 2020 04:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37971 * 120.07755 * 2 1 4 4 C 1.38339 * 120.14684 * 179.97438 * 3 2 1 5 5 C 1.38383 * 120.29418 * 0.02562 * 4 3 2 6 6 C 1.37932 * 120.14338 * 359.97438 * 5 4 3 7 7 C 1.39564 * 120.06967 * 179.97438 * 2 1 3 8 8 C 1.47845 * 120.14706 * 0.02562 * 7 2 1 9 9 O 1.21548 * 119.99841 * 354.35581 * 8 7 2 10 10 N 1.34776 * 120.00142 * 174.35877 * 8 7 2 11 11 C 1.46497 * 120.00043 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46945 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.47229 * 65.00711 * 12 11 10 14 14 N 1.46894 * 109.47594 * 305.00313 * 12 11 10 15 15 C 1.46900 * 111.00227 * 158.30021 * 14 12 11 16 16 C 1.50696 * 109.47086 * 185.45396 * 15 14 12 17 17 O 1.21294 * 120.00256 * 0.02562 * 16 15 14 18 18 N 1.34781 * 120.00072 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99961 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00289 * 0.02562 * 19 18 16 21 21 C 1.38956 * 119.99781 * 179.97438 * 19 18 16 22 22 N 1.31417 * 120.00012 * 0.02562 * 21 19 18 23 23 Si 1.86790 * 120.00109 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47299 * 60.00032 * 23 21 19 25 25 H 1.48500 * 109.47368 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47450 * 299.99948 * 23 21 19 27 27 C 1.53002 * 109.47019 * 185.00144 * 12 11 10 28 28 C 1.53002 * 109.47363 * 295.84497 * 27 12 11 29 29 C 1.53001 * 109.46828 * 55.84503 * 27 12 11 30 30 H 1.08992 * 109.47181 * 263.76538 * 1 2 3 31 31 H 1.08998 * 109.47122 * 23.76602 * 1 2 3 32 32 H 1.09003 * 109.47190 * 143.76483 * 1 2 3 33 33 H 1.08004 * 119.92813 * 359.97438 * 3 2 1 34 34 H 1.08006 * 119.85083 * 180.02562 * 4 3 2 35 35 H 1.07994 * 119.92753 * 180.27190 * 5 4 3 36 36 H 1.07998 * 120.07563 * 180.02562 * 6 5 4 37 37 H 0.97001 * 119.99878 * 359.97438 * 10 8 7 38 38 H 1.08996 * 109.47341 * 300.00361 * 11 10 8 39 39 H 1.08999 * 109.46607 * 60.00142 * 11 10 8 40 40 H 1.00900 * 111.00234 * 282.26124 * 14 12 11 41 41 H 1.08992 * 109.47118 * 305.46141 * 15 14 12 42 42 H 1.09001 * 109.46936 * 65.46193 * 15 14 12 43 43 H 0.97001 * 119.99578 * 0.02562 * 18 16 15 44 44 H 0.96996 * 119.99916 * 180.02562 * 22 21 19 45 45 H 1.08996 * 109.47595 * 175.84295 * 27 12 11 46 46 H 1.09002 * 109.46717 * 56.69012 * 28 27 12 47 47 H 1.08998 * 109.47091 * 176.68852 * 28 27 12 48 48 H 1.08998 * 109.47280 * 296.69187 * 28 27 12 49 49 H 1.08995 * 109.47552 * 60.00202 * 29 27 12 50 50 H 1.09004 * 109.46938 * 180.02562 * 29 27 12 51 51 H 1.09000 * 109.47080 * 299.99521 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5818 1.1956 0.0005 5 6 4.2813 0.0016 0.0005 6 6 3.6023 -1.1990 0.0005 7 6 2.2063 -1.2078 0.0005 8 6 1.4719 -2.4910 0.0005 9 8 0.2608 -2.4980 0.1036 10 7 2.1453 -3.6528 -0.1137 11 6 1.4176 -4.9243 -0.1131 12 6 2.4102 -6.0800 -0.2550 13 1 3.0541 -6.1159 0.6238 14 7 3.2314 -5.8756 -1.4557 15 6 4.4896 -6.6286 -1.3674 16 6 5.3612 -6.2909 -2.5495 17 8 4.9726 -5.5002 -3.3833 18 7 6.5724 -6.8673 -2.6803 19 6 7.3655 -6.5596 -3.7554 20 1 7.0199 -5.8551 -4.4974 21 6 8.6145 -7.1536 -3.8900 22 7 9.0353 -8.0106 -2.9869 23 14 9.6948 -6.7350 -5.3551 24 1 9.9881 -5.2792 -5.3541 25 1 10.9670 -7.4957 -5.2656 26 1 8.9886 -7.0967 -6.6104 27 6 1.6436 -7.3982 -0.3798 28 6 0.8692 -7.6623 0.9131 29 6 0.6642 -7.3096 -1.5518 30 1 -0.3633 -0.1116 1.0215 31 1 -0.3633 0.9405 -0.4141 32 1 -0.3634 -0.8289 -0.6075 33 1 1.6585 2.1293 -0.0004 34 1 4.1183 2.1330 0.0010 35 1 5.3612 0.0098 0.0054 36 1 4.1493 -2.1302 0.0010 37 1 3.1118 -3.6472 -0.1962 38 1 0.8693 -5.0287 0.8231 39 1 0.7175 -4.9425 -0.9483 40 1 2.7201 -6.1223 -2.2898 41 1 5.0080 -6.3632 -0.4461 42 1 4.2744 -7.6972 -1.3684 43 1 6.8830 -7.4999 -2.0137 44 1 9.9073 -8.4249 -3.0806 45 1 2.3469 -8.2124 -0.5547 46 1 0.2082 -6.8203 1.1191 47 1 0.2770 -8.5707 0.8029 48 1 1.5707 -7.7838 1.7385 49 1 1.2158 -7.1216 -2.4729 50 1 0.1177 -8.2486 -1.6404 51 1 -0.0392 -6.4955 -1.3768 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753822174.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:48 Heat of formation + Delta-G solvation = -76.403902 kcal Electronic energy + Delta-G solvation = -30573.332935 eV Core-core repulsion = 26471.173033 eV Total energy + Delta-G solvation = -4102.159902 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.39060 -40.34843 -39.50805 -38.75995 -35.98145 -35.43966 -34.29487 -33.46159 -33.20229 -32.28885 -29.68009 -28.32664 -28.00203 -27.41267 -25.78028 -24.63592 -23.93279 -22.38485 -21.48365 -21.07611 -20.38373 -19.89542 -18.66462 -17.90042 -17.40341 -16.88108 -16.58536 -16.50039 -16.37953 -16.10663 -15.98763 -15.74925 -15.44051 -15.22384 -15.07249 -14.75126 -14.45011 -14.15879 -14.04796 -13.96145 -13.79408 -13.54300 -13.37440 -13.14103 -13.02786 -12.94914 -12.89983 -12.75142 -12.63481 -12.51223 -12.41507 -12.12868 -12.06674 -11.99233 -11.73873 -11.48493 -11.42419 -10.62709 -10.32098 -10.11736 -9.98826 -9.83534 -9.61121 -9.30110 -8.45122 -5.93176 -0.09334 0.40798 1.40070 1.42235 1.52473 1.90544 2.09190 2.25035 2.30081 2.88233 2.90153 3.22635 3.53213 3.73607 3.75981 3.87617 3.92222 3.93162 4.05123 4.17330 4.25583 4.34578 4.35546 4.41614 4.48731 4.52189 4.60380 4.69576 4.73633 4.75750 4.81322 4.83715 4.87001 4.91091 4.99482 5.02105 5.05489 5.20186 5.25959 5.35801 5.37951 5.41200 5.42676 5.51462 5.56892 5.64067 5.89536 5.98335 6.10454 6.36077 6.59642 6.62892 7.15314 7.24403 7.59878 8.15706 8.71964 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008221 B = 0.002912 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3404.903727 B = 9612.532353 C =12415.755218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.044 4.044 3 C -0.136 4.136 4 C -0.088 4.088 5 C -0.142 4.142 6 C -0.088 4.088 7 C -0.163 4.163 8 C 0.550 3.450 9 O -0.570 6.570 10 N -0.704 5.704 11 C 0.133 3.867 12 C 0.085 3.915 13 H 0.099 0.901 14 N -0.672 5.672 15 C 0.065 3.935 16 C 0.439 3.561 17 O -0.621 6.621 18 N -0.574 5.574 19 C -0.332 4.332 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.989 3.011 24 H -0.272 1.272 25 H -0.271 1.271 26 H -0.273 1.273 27 C -0.119 4.119 28 C -0.143 4.143 29 C -0.154 4.154 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.146 0.854 36 H 0.130 0.870 37 H 0.410 0.590 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.345 0.655 41 H 0.109 0.891 42 H 0.067 0.933 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.075 0.925 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.043 0.957 50 H 0.067 0.933 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.222 8.989 12.055 20.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.045 4.045 3 C -0.153 4.153 4 C -0.105 4.105 5 C -0.160 4.160 6 C -0.107 4.107 7 C -0.166 4.166 8 C 0.339 3.661 9 O -0.452 6.452 10 N -0.355 5.355 11 C 0.009 3.991 12 C -0.025 4.025 13 H 0.117 0.883 14 N -0.305 5.305 15 C -0.067 4.067 16 C 0.227 3.773 17 O -0.507 6.507 18 N -0.211 5.211 19 C -0.461 4.461 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.561 5.561 23 Si 0.813 3.187 24 H -0.197 1.197 25 H -0.196 1.196 26 H -0.199 1.199 27 C -0.140 4.140 28 C -0.201 4.201 29 C -0.212 4.212 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.170 0.830 34 H 0.174 0.826 35 H 0.163 0.837 36 H 0.148 0.852 37 H 0.247 0.753 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.166 0.834 41 H 0.127 0.873 42 H 0.084 0.916 43 H 0.230 0.770 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.082 0.918 49 H 0.062 0.938 50 H 0.086 0.914 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.856 9.934 11.805 20.737 hybrid contribution 1.045 -1.381 -0.809 1.912 sum -12.811 8.552 10.996 18.926 Atomic orbital electron populations 1.20986 0.90053 1.03070 1.02944 1.20290 0.97200 0.92087 0.94951 1.21365 0.94783 0.97646 1.01552 1.21741 0.94233 0.99209 0.95365 1.21431 1.01429 0.92074 1.01044 1.21512 0.92667 0.99782 0.96691 1.19902 0.94255 0.93161 1.09234 1.18539 0.86860 0.84573 0.76176 1.90663 1.14641 1.87742 1.52180 1.45805 1.11726 1.05281 1.72642 1.21502 0.94116 0.81567 1.01940 1.21925 0.93913 0.92984 0.93702 0.88310 1.60143 1.05110 1.60107 1.05131 1.21562 0.91058 0.97325 0.96780 1.20904 0.83153 0.83923 0.89325 1.90511 1.74455 1.39259 1.46504 1.41919 1.15095 1.40465 1.23664 1.19596 0.98321 1.25184 1.03040 0.90454 1.25973 0.98228 0.95857 1.01076 1.69659 1.21414 1.29041 1.36028 0.85050 0.77345 0.78461 0.77884 1.19710 1.19583 1.19874 1.21710 0.98034 0.97186 0.97030 1.21831 1.00228 1.02148 0.95910 1.21948 0.99248 1.02630 0.97332 0.91150 0.90459 0.90980 0.82971 0.82604 0.83667 0.85223 0.75313 0.90160 0.92180 0.83414 0.87316 0.91564 0.77019 0.91369 0.90681 0.92216 0.91875 0.91762 0.93801 0.91420 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.59 8.76 71.24 0.62 -1.97 16 2 C -0.04 -1.06 5.91 -19.61 -0.12 -1.17 16 3 C -0.14 -2.50 9.66 22.23 0.21 -2.28 16 4 C -0.09 -1.48 10.04 22.33 0.22 -1.25 16 5 C -0.14 -2.80 10.03 22.23 0.22 -2.58 16 6 C -0.09 -2.08 9.53 22.53 0.21 -1.86 16 7 C -0.16 -4.32 5.87 -20.08 -0.12 -4.43 16 8 C 0.55 16.01 7.71 86.79 0.67 16.68 16 9 O -0.57 -18.87 13.32 -3.87 -0.05 -18.92 16 10 N -0.70 -18.13 5.34 -465.99 -2.49 -20.62 16 11 C 0.13 3.03 4.68 86.38 0.40 3.43 16 12 C 0.08 1.75 1.97 44.92 0.09 1.84 16 13 H 0.10 1.82 7.77 -2.39 -0.02 1.80 16 14 N -0.67 -18.86 5.21 -495.61 -2.58 -21.44 16 15 C 0.07 2.00 5.97 85.56 0.51 2.51 16 16 C 0.44 19.82 7.83 87.66 0.69 20.50 16 17 O -0.62 -33.22 15.90 -3.07 -0.05 -33.26 16 18 N -0.57 -28.36 5.29 -306.98 -1.62 -29.98 16 19 C -0.33 -18.45 9.68 84.04 0.81 -17.64 16 20 H 0.08 4.61 7.16 -2.91 -0.02 4.58 16 21 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 22 N -0.92 -48.78 13.05 21.67 0.28 -48.50 16 23 Si 0.99 42.38 29.55 68.60 2.03 44.41 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 C -0.12 -2.12 2.78 -10.79 -0.03 -2.15 16 28 C -0.14 -2.07 9.01 71.98 0.65 -1.43 16 29 C -0.15 -2.95 8.52 71.98 0.61 -2.34 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.08 1.33 8.04 -2.39 -0.02 1.32 16 32 H 0.07 2.01 5.81 -2.39 -0.01 2.00 16 33 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 34 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 35 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 36 H 0.13 2.90 6.45 -2.91 -0.02 2.88 16 37 H 0.41 10.34 6.21 -92.71 -0.58 9.77 16 38 H 0.08 1.71 6.72 -2.39 -0.02 1.69 16 39 H 0.06 1.53 6.07 -2.39 -0.01 1.52 16 40 H 0.35 10.69 6.47 -89.69 -0.58 10.11 16 41 H 0.11 2.88 7.93 -2.39 -0.02 2.87 16 42 H 0.07 1.80 7.31 -2.39 -0.02 1.78 16 43 H 0.40 18.54 7.90 -92.71 -0.73 17.81 16 44 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 45 H 0.07 1.40 7.25 -2.39 -0.02 1.38 16 46 H 0.06 0.87 6.50 -2.39 -0.02 0.86 16 47 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.04 0.97 6.42 -2.39 -0.02 0.96 16 50 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.06 1.19 6.25 -2.39 -0.01 1.17 16 Total: -1.00 -69.71 407.73 0.75 -68.96 By element: Atomic # 1 Polarization: 54.53 SS G_CDS: -0.91 Total: 53.62 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 6.14 Total: 5.72 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -6.41 Total: -120.54 kcal Atomic # 8 Polarization: -52.08 SS G_CDS: -0.10 Total: -52.18 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -69.71 0.75 -68.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753822174.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.440 kcal (2) G-P(sol) polarization free energy of solvation -69.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds