Wall clock time and date at job start Wed Apr 1 2020 05:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38383 * 119.92649 * 2 1 4 4 C 1.38341 * 120.29359 * 179.97438 * 3 2 1 5 5 C 1.37984 * 120.14387 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.07240 * 179.97438 * 5 4 3 7 7 C 1.39560 * 119.85235 * 359.97438 * 5 4 3 8 8 C 1.47847 * 120.14298 * 179.97438 * 7 5 4 9 9 O 1.21555 * 119.99676 * 354.01833 * 8 7 5 10 10 N 1.34776 * 119.99974 * 174.01427 * 8 7 5 11 11 C 1.46496 * 119.99990 * 180.02562 * 10 8 7 12 12 H 1.09007 * 109.47220 * 324.99731 * 11 10 8 13 13 C 1.52992 * 109.47272 * 85.00135 * 11 10 8 14 14 C 1.52996 * 109.47176 * 205.00399 * 11 10 8 15 15 C 1.53004 * 109.47399 * 65.00050 * 14 11 10 16 16 N 1.46901 * 109.46989 * 180.02562 * 15 14 11 17 17 C 1.46907 * 110.99509 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.46628 * 179.97438 * 17 16 15 19 19 O 1.21289 * 120.00367 * 359.97438 * 18 17 16 20 20 N 1.34781 * 119.99821 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00163 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99689 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00162 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99968 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00143 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47252 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47013 * 119.99994 * 25 23 21 28 28 H 1.48500 * 109.47232 * 239.99799 * 25 23 21 29 29 C 1.37943 * 119.93162 * 180.25471 * 2 1 3 30 30 H 1.09000 * 109.46951 * 90.00390 * 1 2 3 31 31 H 1.09005 * 109.47058 * 209.99406 * 1 2 3 32 32 H 1.08997 * 109.47537 * 329.99690 * 1 2 3 33 33 H 1.07995 * 119.85551 * 359.97438 * 3 2 1 34 34 H 1.07998 * 119.92710 * 180.02562 * 4 3 2 35 35 H 1.08994 * 109.47546 * 263.42885 * 6 5 4 36 36 H 1.09001 * 109.47111 * 23.43801 * 6 5 4 37 37 H 1.09002 * 109.46721 * 143.42870 * 6 5 4 38 38 H 0.96996 * 119.99848 * 0.02562 * 10 8 7 39 39 H 1.08992 * 109.47197 * 60.00103 * 13 11 10 40 40 H 1.09006 * 109.47235 * 180.02562 * 13 11 10 41 41 H 1.09005 * 109.47264 * 299.99757 * 13 11 10 42 42 H 1.08998 * 109.47081 * 304.99945 * 14 11 10 43 43 H 1.09003 * 109.47622 * 184.99902 * 14 11 10 44 44 H 1.08998 * 109.47089 * 59.99900 * 15 14 11 45 45 H 1.09004 * 109.46554 * 299.99919 * 15 14 11 46 46 H 1.00898 * 110.99944 * 303.94861 * 16 15 14 47 47 H 1.08999 * 109.47228 * 299.99716 * 17 16 15 48 48 H 1.08997 * 109.47214 * 60.00146 * 17 16 15 49 49 H 0.97008 * 119.99670 * 0.02562 * 20 18 17 50 50 H 0.96997 * 120.00727 * 180.02562 * 24 23 21 51 51 H 1.07997 * 120.07052 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5807 1.2082 0.0005 5 6 4.2812 0.0194 0.0005 6 6 5.7882 0.0309 0.0005 7 6 3.5911 -1.1936 0.0005 8 6 4.3352 -2.4712 0.0000 9 8 5.5458 -2.4693 -0.1102 10 7 3.6714 -3.6377 0.1217 11 6 4.4088 -4.9036 0.1217 12 1 5.2620 -4.8271 -0.5524 13 6 4.9030 -5.2059 1.5377 14 6 3.4871 -6.0307 -0.3484 15 6 3.0927 -5.7921 -1.8073 16 7 2.2073 -6.8741 -2.2583 17 6 1.8067 -6.6774 -3.6580 18 6 0.9017 -7.8044 -4.0844 19 8 0.6186 -8.6850 -3.2999 20 7 0.4076 -7.8344 -5.3381 21 6 -0.4161 -8.8594 -5.7259 22 1 -0.6689 -9.6430 -5.0270 23 6 -0.9250 -8.8905 -7.0185 24 7 -0.6171 -7.9373 -7.8690 25 14 -2.0469 -10.2874 -7.5472 26 1 -2.2380 -11.2255 -6.4120 27 1 -3.3625 -9.7364 -7.9602 28 1 -1.4324 -11.0105 -8.6894 29 6 2.1952 -1.1954 -0.0053 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.6537 2.1325 -0.0004 34 1 4.1134 2.1476 0.0009 35 1 6.1525 -0.0839 -1.0203 36 1 6.1443 0.9766 0.4093 37 1 6.1577 -0.7916 0.6129 38 1 2.7054 -3.6392 0.2093 39 1 4.0499 -5.2825 2.2116 40 1 5.4521 -6.1476 1.5376 41 1 5.5597 -4.4029 1.8725 42 1 2.5910 -6.0498 0.2719 43 1 4.0076 -6.9848 -0.2641 44 1 3.9888 -5.7731 -2.4275 45 1 2.5721 -4.8381 -1.8915 46 1 2.6428 -7.7751 -2.1297 47 1 1.2775 -5.7295 -3.7548 48 1 2.6937 -6.6647 -4.2914 49 1 0.6350 -7.1307 -5.9659 50 1 -0.9726 -7.9588 -8.7712 51 1 1.6552 -2.1307 -0.0099 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754016307.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:27 Heat of formation + Delta-G solvation = -63.428058 kcal Electronic energy + Delta-G solvation = -29516.673155 eV Core-core repulsion = 25415.075928 eV Total energy + Delta-G solvation = -4101.597227 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.75824 -39.00586 -38.30363 -36.95341 -35.09605 -33.98035 -33.80819 -32.60748 -31.24715 -30.74873 -29.45693 -29.15912 -26.25402 -25.42924 -24.37137 -23.97402 -22.50622 -21.86743 -20.74431 -20.52528 -19.23215 -17.91325 -17.65703 -16.69008 -16.17703 -15.93904 -15.75835 -15.43842 -15.36874 -15.00706 -14.57811 -14.38416 -14.16069 -13.97134 -13.81806 -13.72602 -13.61075 -13.32872 -13.16406 -13.12549 -12.88790 -12.64105 -12.30319 -12.27226 -12.05884 -11.97713 -11.83629 -11.66774 -11.51274 -11.42685 -11.25044 -11.24047 -11.06168 -10.91895 -10.34930 -10.23063 -9.79377 -9.52767 -9.42208 -9.22962 -8.79127 -8.47639 -8.07616 -7.96645 -6.42341 -3.83231 0.55323 0.98999 2.61961 2.91407 3.15792 3.26352 3.33649 3.50233 3.90021 4.03153 4.24265 4.33503 4.43325 4.45309 4.64402 4.80695 4.83487 4.84729 4.93095 5.05651 5.11721 5.17310 5.23761 5.29470 5.31024 5.33912 5.35720 5.41226 5.50951 5.56755 5.57223 5.60684 5.68030 5.72202 5.79721 5.87869 5.91072 5.93881 5.98934 6.01940 6.07352 6.16892 6.25842 6.27071 6.35721 6.56842 7.19458 7.27632 7.54795 7.64719 7.99930 8.05912 8.60554 9.17275 9.53729 10.05027 10.75499 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011721 B = 0.001934 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.266493 B =14472.087919 C =15902.934457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.100 4.100 3 C -0.091 4.091 4 C -0.129 4.129 5 C -0.029 4.029 6 C -0.120 4.120 7 C -0.137 4.137 8 C 0.559 3.441 9 O -0.533 6.533 10 N -0.719 5.719 11 C 0.144 3.856 12 H 0.090 0.910 13 C -0.162 4.162 14 C -0.126 4.126 15 C 0.059 3.941 16 N -0.669 5.669 17 C 0.051 3.949 18 C 0.441 3.559 19 O -0.584 6.584 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 C -0.081 4.081 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.095 0.905 38 H 0.400 0.600 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.027 0.973 45 H 0.069 0.931 46 H 0.349 0.651 47 H 0.085 0.915 48 H 0.043 0.957 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.181 19.207 17.385 27.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.100 4.100 3 C -0.109 4.109 4 C -0.147 4.147 5 C -0.030 4.030 6 C -0.177 4.177 7 C -0.140 4.140 8 C 0.348 3.652 9 O -0.411 6.411 10 N -0.371 5.371 11 C 0.039 3.961 12 H 0.108 0.892 13 C -0.220 4.220 14 C -0.164 4.164 15 C -0.071 4.071 16 N -0.302 5.302 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 C -0.100 4.100 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.113 0.887 38 H 0.236 0.764 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.045 0.955 45 H 0.087 0.913 46 H 0.168 0.832 47 H 0.103 0.897 48 H 0.061 0.939 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.227 18.879 17.881 27.591 hybrid contribution -0.219 -0.339 -1.313 1.373 sum 9.008 18.540 16.568 26.446 Atomic orbital electron populations 1.20814 0.90576 1.03049 1.02817 1.19858 0.96484 0.92806 1.00865 1.21246 0.94186 0.97727 0.97764 1.21054 0.94084 0.97592 1.01964 1.20048 0.96883 0.91478 0.94595 1.21074 0.90055 1.02853 1.03670 1.19777 0.93460 0.93249 1.07499 1.18256 0.87153 0.83660 0.76164 1.90719 1.13663 1.87096 1.49651 1.46078 1.10964 1.05666 1.74426 1.20991 0.95205 0.82253 0.97628 0.89243 1.22158 1.01501 1.02134 0.96214 1.21884 0.99949 0.97932 0.96644 1.21963 0.94698 0.95799 0.94630 1.60089 1.44665 1.05466 1.19955 1.21667 0.98255 0.99405 0.88891 1.19813 0.85754 0.88428 0.83370 1.90518 1.63324 1.40349 1.52585 1.41881 1.43158 1.24619 1.10427 1.19754 1.23027 1.03251 0.96788 0.87856 1.25271 0.98607 0.98420 0.95729 1.69618 1.45381 1.33059 1.06261 0.85796 0.79343 0.80541 0.78642 1.19206 1.20736 1.20767 1.21203 0.92750 0.98202 0.97863 0.90795 0.91219 0.91414 0.85624 0.85406 0.90694 0.92586 0.88684 0.76393 0.92328 0.91430 0.92148 0.90203 0.90091 0.95486 0.91252 0.83185 0.89708 0.93913 0.77460 0.91914 0.85531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 10.01 36.00 0.36 -0.34 16 2 C -0.10 -0.79 5.87 -104.68 -0.61 -1.40 16 3 C -0.09 -0.68 9.69 -39.49 -0.38 -1.06 16 4 C -0.13 -1.03 9.66 -39.64 -0.38 -1.42 16 5 C -0.03 -0.28 5.91 -104.22 -0.62 -0.90 16 6 C -0.12 -1.13 8.74 36.01 0.31 -0.82 16 7 C -0.14 -1.39 5.87 -104.97 -0.62 -2.00 16 8 C 0.56 6.22 7.67 -12.33 -0.09 6.12 16 9 O -0.53 -7.22 13.00 5.32 0.07 -7.15 16 10 N -0.72 -6.57 4.48 -54.75 -0.25 -6.81 16 11 C 0.14 1.33 2.57 -67.94 -0.17 1.15 16 12 H 0.09 0.96 7.58 -51.92 -0.39 0.57 16 13 C -0.16 -1.35 9.48 37.15 0.35 -1.00 16 14 C -0.13 -1.20 5.01 -26.73 -0.13 -1.33 16 15 C 0.06 0.70 5.57 -3.82 -0.02 0.68 16 16 N -0.67 -10.59 6.13 -115.05 -0.70 -11.30 16 17 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 18 C 0.44 10.46 7.82 -10.98 -0.09 10.37 16 19 O -0.58 -15.87 15.78 5.55 0.09 -15.78 16 20 N -0.56 -14.39 5.29 -10.96 -0.06 -14.45 16 21 C -0.30 -8.36 9.68 -14.94 -0.14 -8.51 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 25 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 C -0.08 -0.70 9.17 -39.19 -0.36 -1.06 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.38 8.09 -51.93 -0.42 -0.03 16 32 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 34 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.41 8.04 -51.93 -0.42 -0.01 16 37 H 0.09 1.05 5.85 -51.93 -0.30 0.74 16 38 H 0.40 3.02 6.68 -40.82 -0.27 2.75 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.81 7.75 -51.93 -0.40 0.41 16 46 H 0.35 5.69 8.43 -39.29 -0.33 5.36 16 47 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 48 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 50 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 51 H 0.13 0.87 6.46 -52.49 -0.34 0.53 16 LS Contribution 420.86 15.07 6.34 6.34 Total: -1.00 -33.08 420.86 -9.74 -42.82 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -8.21 Total: 14.34 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -2.73 Total: -0.15 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.28 Total: -56.47 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: 0.16 Total: -22.93 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -33.08 -9.74 -42.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754016307.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.606 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds