Wall clock time and date at job start Wed Apr 1 2020 05:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38383 * 119.92649 * 2 1 4 4 C 1.38341 * 120.29359 * 179.97438 * 3 2 1 5 5 C 1.37984 * 120.14387 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.07240 * 179.97438 * 5 4 3 7 7 C 1.39560 * 119.85235 * 359.97438 * 5 4 3 8 8 C 1.47847 * 120.14298 * 179.97438 * 7 5 4 9 9 O 1.21555 * 119.99676 * 354.01833 * 8 7 5 10 10 N 1.34776 * 119.99974 * 174.01427 * 8 7 5 11 11 C 1.46496 * 119.99990 * 180.02562 * 10 8 7 12 12 H 1.09007 * 109.47220 * 324.99731 * 11 10 8 13 13 C 1.52992 * 109.47272 * 85.00135 * 11 10 8 14 14 C 1.52996 * 109.47176 * 205.00399 * 11 10 8 15 15 C 1.53004 * 109.47399 * 65.00050 * 14 11 10 16 16 N 1.46901 * 109.46989 * 180.02562 * 15 14 11 17 17 C 1.46907 * 110.99509 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.46628 * 179.97438 * 17 16 15 19 19 O 1.21289 * 120.00367 * 359.97438 * 18 17 16 20 20 N 1.34781 * 119.99821 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00163 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99689 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00162 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99968 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00143 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47252 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47013 * 119.99994 * 25 23 21 28 28 H 1.48500 * 109.47232 * 239.99799 * 25 23 21 29 29 C 1.37943 * 119.93162 * 180.25471 * 2 1 3 30 30 H 1.09000 * 109.46951 * 90.00390 * 1 2 3 31 31 H 1.09005 * 109.47058 * 209.99406 * 1 2 3 32 32 H 1.08997 * 109.47537 * 329.99690 * 1 2 3 33 33 H 1.07995 * 119.85551 * 359.97438 * 3 2 1 34 34 H 1.07998 * 119.92710 * 180.02562 * 4 3 2 35 35 H 1.08994 * 109.47546 * 263.42885 * 6 5 4 36 36 H 1.09001 * 109.47111 * 23.43801 * 6 5 4 37 37 H 1.09002 * 109.46721 * 143.42870 * 6 5 4 38 38 H 0.96996 * 119.99848 * 0.02562 * 10 8 7 39 39 H 1.08992 * 109.47197 * 60.00103 * 13 11 10 40 40 H 1.09006 * 109.47235 * 180.02562 * 13 11 10 41 41 H 1.09005 * 109.47264 * 299.99757 * 13 11 10 42 42 H 1.08998 * 109.47081 * 304.99945 * 14 11 10 43 43 H 1.09003 * 109.47622 * 184.99902 * 14 11 10 44 44 H 1.08998 * 109.47089 * 59.99900 * 15 14 11 45 45 H 1.09004 * 109.46554 * 299.99919 * 15 14 11 46 46 H 1.00898 * 110.99944 * 303.94861 * 16 15 14 47 47 H 1.08999 * 109.47228 * 299.99716 * 17 16 15 48 48 H 1.08997 * 109.47214 * 60.00146 * 17 16 15 49 49 H 0.97008 * 119.99670 * 0.02562 * 20 18 17 50 50 H 0.96997 * 120.00727 * 180.02562 * 24 23 21 51 51 H 1.07997 * 120.07052 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5807 1.2082 0.0005 5 6 4.2812 0.0194 0.0005 6 6 5.7882 0.0309 0.0005 7 6 3.5911 -1.1936 0.0005 8 6 4.3352 -2.4712 0.0000 9 8 5.5458 -2.4693 -0.1102 10 7 3.6714 -3.6377 0.1217 11 6 4.4088 -4.9036 0.1217 12 1 5.2620 -4.8271 -0.5524 13 6 4.9030 -5.2059 1.5377 14 6 3.4871 -6.0307 -0.3484 15 6 3.0927 -5.7921 -1.8073 16 7 2.2073 -6.8741 -2.2583 17 6 1.8067 -6.6774 -3.6580 18 6 0.9017 -7.8044 -4.0844 19 8 0.6186 -8.6850 -3.2999 20 7 0.4076 -7.8344 -5.3381 21 6 -0.4161 -8.8594 -5.7259 22 1 -0.6689 -9.6430 -5.0270 23 6 -0.9250 -8.8905 -7.0185 24 7 -0.6171 -7.9373 -7.8690 25 14 -2.0469 -10.2874 -7.5472 26 1 -2.2380 -11.2255 -6.4120 27 1 -3.3625 -9.7364 -7.9602 28 1 -1.4324 -11.0105 -8.6894 29 6 2.1952 -1.1954 -0.0053 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.6537 2.1325 -0.0004 34 1 4.1134 2.1476 0.0009 35 1 6.1525 -0.0839 -1.0203 36 1 6.1443 0.9766 0.4093 37 1 6.1577 -0.7916 0.6129 38 1 2.7054 -3.6392 0.2093 39 1 4.0499 -5.2825 2.2116 40 1 5.4521 -6.1476 1.5376 41 1 5.5597 -4.4029 1.8725 42 1 2.5910 -6.0498 0.2719 43 1 4.0076 -6.9848 -0.2641 44 1 3.9888 -5.7731 -2.4275 45 1 2.5721 -4.8381 -1.8915 46 1 2.6428 -7.7751 -2.1297 47 1 1.2775 -5.7295 -3.7548 48 1 2.6937 -6.6647 -4.2914 49 1 0.6350 -7.1307 -5.9659 50 1 -0.9726 -7.9588 -8.7712 51 1 1.6552 -2.1307 -0.0099 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754016307.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:26 Heat of formation + Delta-G solvation = -85.437920 kcal Electronic energy + Delta-G solvation = -29517.627574 eV Core-core repulsion = 25415.075928 eV Total energy + Delta-G solvation = -4102.551646 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.50582 -40.18680 -39.66805 -37.94863 -36.35540 -35.74246 -34.58331 -33.44929 -33.23907 -31.52368 -30.31424 -29.93117 -27.80206 -26.10841 -25.77731 -24.87615 -23.43423 -22.69141 -21.54876 -21.30278 -20.99173 -19.91560 -18.43119 -17.84438 -17.47040 -17.04107 -16.56569 -16.48221 -16.24578 -16.22901 -15.97351 -15.65388 -15.38949 -15.12990 -14.92049 -14.68619 -14.47664 -14.32848 -14.03645 -13.84786 -13.74297 -13.60305 -13.50659 -13.43021 -13.16256 -12.95271 -12.84761 -12.71093 -12.54654 -12.45149 -12.41911 -12.21895 -12.13039 -12.10930 -11.99439 -11.76877 -11.52187 -10.62608 -10.37067 -10.19233 -10.02808 -9.89439 -9.43047 -9.36783 -8.47580 -5.96545 -0.12093 0.36681 1.36417 1.41877 1.56243 1.86686 2.03396 2.15991 2.28534 2.82581 2.86831 3.19535 3.46881 3.66406 3.81721 3.86376 3.94111 4.04747 4.06500 4.09202 4.28810 4.31003 4.41518 4.44664 4.48651 4.51660 4.60601 4.63379 4.66797 4.74379 4.80122 4.82688 4.86673 4.87468 4.88756 4.99803 5.05188 5.18234 5.19450 5.29235 5.30930 5.36587 5.40518 5.55827 5.59021 5.62013 5.86699 5.97103 6.07861 6.38326 6.52620 6.58580 7.11463 7.20659 7.54685 8.09536 8.70101 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011721 B = 0.001934 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.266493 B =14472.087919 C =15902.934457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.106 4.106 3 C -0.091 4.091 4 C -0.131 4.131 5 C -0.050 4.050 6 C -0.114 4.114 7 C -0.156 4.156 8 C 0.555 3.445 9 O -0.565 6.565 10 N -0.711 5.711 11 C 0.149 3.851 12 H 0.074 0.926 13 C -0.156 4.156 14 C -0.114 4.114 15 C 0.062 3.938 16 N -0.679 5.679 17 C 0.064 3.936 18 C 0.438 3.562 19 O -0.622 6.622 20 N -0.574 5.574 21 C -0.333 4.333 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.271 1.271 29 C -0.087 4.087 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.409 0.591 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.045 0.955 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.029 0.971 45 H 0.074 0.926 46 H 0.345 0.655 47 H 0.103 0.897 48 H 0.062 0.938 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.262 20.294 17.618 28.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.107 4.107 3 C -0.109 4.109 4 C -0.149 4.149 5 C -0.051 4.051 6 C -0.170 4.170 7 C -0.159 4.159 8 C 0.344 3.656 9 O -0.446 6.446 10 N -0.363 5.363 11 C 0.044 3.956 12 H 0.092 0.908 13 C -0.214 4.214 14 C -0.152 4.152 15 C -0.067 4.067 16 N -0.311 5.311 17 C -0.069 4.069 18 C 0.226 3.774 19 O -0.508 6.508 20 N -0.211 5.211 21 C -0.462 4.462 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.818 3.182 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.196 1.196 29 C -0.106 4.106 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.169 0.831 34 H 0.166 0.834 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.246 0.754 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.064 0.936 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.047 0.953 45 H 0.092 0.908 46 H 0.164 0.836 47 H 0.121 0.879 48 H 0.080 0.920 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.302 19.988 18.114 28.224 hybrid contribution 0.074 -0.622 -1.348 1.486 sum 8.376 19.366 16.766 26.950 Atomic orbital electron populations 1.20852 0.89174 1.03995 1.03132 1.20171 0.97587 0.92720 1.00174 1.21598 0.94109 0.98696 0.96490 1.21315 0.94600 0.97733 1.01233 1.20240 0.97007 0.92226 0.95633 1.20966 0.90350 1.03035 1.02689 1.19834 0.94207 0.92869 1.08973 1.18522 0.86898 0.84455 0.75691 1.90703 1.14994 1.87584 1.51291 1.46024 1.11378 1.05219 1.73662 1.20908 0.94619 0.82126 0.97905 0.90816 1.22099 1.01656 1.02108 0.95556 1.21782 1.00164 0.98270 0.95019 1.22020 0.94078 0.94646 0.95947 1.60106 1.46048 1.06342 1.18604 1.21530 0.97724 0.97223 0.90379 1.20840 0.85215 0.89100 0.82268 1.90486 1.64628 1.42269 1.53437 1.41956 1.43432 1.24404 1.11300 1.19712 1.25121 1.04099 0.97304 0.90222 1.26067 0.99453 1.00686 0.95198 1.69677 1.45780 1.34107 1.06645 0.84854 0.77766 0.77535 0.78087 1.19701 1.19561 1.19634 1.21388 0.92183 0.99302 0.97724 0.90681 0.90825 0.90022 0.83116 0.83381 0.91780 0.90631 0.90719 0.75360 0.91382 0.90322 0.93601 0.89726 0.89349 0.95313 0.90760 0.83621 0.87939 0.92046 0.77019 0.91286 0.84275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 10.01 71.23 0.71 -0.41 16 2 C -0.11 -1.48 5.87 -19.90 -0.12 -1.60 16 3 C -0.09 -1.15 9.69 22.33 0.22 -0.94 16 4 C -0.13 -1.90 9.66 22.23 0.21 -1.69 16 5 C -0.05 -0.96 5.91 -19.61 -0.12 -1.08 16 6 C -0.11 -2.20 8.74 71.24 0.62 -1.58 16 7 C -0.16 -3.13 5.87 -20.09 -0.12 -3.25 16 8 C 0.56 12.52 7.67 86.79 0.67 13.18 16 9 O -0.56 -15.95 13.00 -3.89 -0.05 -16.00 16 10 N -0.71 -12.59 4.48 -445.42 -2.00 -14.59 16 11 C 0.15 2.65 2.57 44.99 0.12 2.76 16 12 H 0.07 1.58 7.58 -2.38 -0.02 1.56 16 13 C -0.16 -2.48 9.48 71.98 0.68 -1.79 16 14 C -0.11 -2.00 5.01 30.59 0.15 -1.85 16 15 C 0.06 1.38 5.57 86.30 0.48 1.87 16 16 N -0.68 -20.64 6.13 -517.90 -3.17 -23.81 16 17 C 0.06 2.20 6.17 85.56 0.53 2.72 16 18 C 0.44 20.86 7.82 87.66 0.69 21.55 16 19 O -0.62 -34.32 15.78 -3.06 -0.05 -34.37 16 20 N -0.57 -29.56 5.29 -306.98 -1.62 -31.18 16 21 C -0.33 -18.93 9.68 84.04 0.81 -18.12 16 22 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 23 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 24 N -0.92 -49.81 13.05 21.66 0.28 -49.53 16 25 Si 0.99 42.86 29.55 68.60 2.03 44.89 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 28 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 29 C -0.09 -1.41 9.17 22.53 0.21 -1.20 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.66 8.09 -2.38 -0.02 0.64 16 32 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 33 H 0.15 1.10 8.06 -2.91 -0.02 1.07 16 34 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.07 8.04 -2.39 -0.02 1.06 16 37 H 0.07 1.75 5.85 -2.39 -0.01 1.74 16 38 H 0.41 5.71 6.68 -92.71 -0.62 5.09 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.04 0.87 8.14 -2.38 -0.02 0.86 16 42 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.07 1.60 7.75 -2.38 -0.02 1.58 16 46 H 0.35 10.97 8.43 -89.70 -0.76 10.22 16 47 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 48 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 49 H 0.40 19.42 7.90 -92.70 -0.73 18.69 16 50 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 51 H 0.14 1.73 6.46 -2.91 -0.02 1.71 16 Total: -1.00 -72.08 420.86 0.49 -71.59 By element: Atomic # 1 Polarization: 45.87 SS G_CDS: -1.15 Total: 44.73 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 6.21 Total: 8.26 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -6.51 Total: -119.11 kcal Atomic # 8 Polarization: -50.26 SS G_CDS: -0.10 Total: -50.36 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -72.08 0.49 -71.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754016307.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.844 kcal (2) G-P(sol) polarization free energy of solvation -72.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds