Wall clock time and date at job start Wed Apr 1 2020 04:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38382 * 119.92686 * 2 1 4 4 C 1.38335 * 120.28660 * 179.97438 * 3 2 1 5 5 C 1.37981 * 120.15173 * 0.02562 * 4 3 2 6 6 C 1.39558 * 119.84736 * 359.97426 * 5 4 3 7 7 C 1.47847 * 120.14334 * 179.97438 * 6 5 4 8 8 O 1.21548 * 120.00167 * 173.80576 * 7 6 5 9 9 N 1.34781 * 119.99890 * 353.80530 * 7 6 5 10 10 C 1.46497 * 119.99969 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.47474 * 35.00107 * 10 9 7 12 12 C 1.53006 * 109.46917 * 274.99998 * 10 9 7 13 13 C 1.53001 * 109.46945 * 155.00527 * 10 9 7 14 14 C 1.53001 * 109.46666 * 294.99547 * 13 10 9 15 15 N 1.46906 * 109.47049 * 180.02562 * 14 13 10 16 16 C 1.46901 * 111.00093 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47064 * 180.02562 * 16 15 14 18 18 O 1.21295 * 120.00043 * 359.97438 * 17 16 15 19 19 N 1.34774 * 120.00002 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00262 * 179.97438 * 19 17 16 21 21 H 1.08009 * 119.99708 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00429 * 179.97438 * 20 19 17 23 23 N 1.31419 * 119.99906 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00221 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.46953 * 90.00347 * 24 22 20 26 26 H 1.48499 * 109.46909 * 210.00252 * 24 22 20 27 27 H 1.48494 * 109.46868 * 330.00141 * 24 22 20 28 28 C 1.37938 * 119.92416 * 180.24964 * 2 1 3 29 29 C 1.50698 * 120.07661 * 0.02741 * 28 2 1 30 30 H 1.09002 * 109.47122 * 90.00137 * 1 2 3 31 31 H 1.08998 * 109.47892 * 210.00229 * 1 2 3 32 32 H 1.09001 * 109.47483 * 330.00504 * 1 2 3 33 33 H 1.07992 * 119.85521 * 359.97186 * 3 2 1 34 34 H 1.08003 * 119.92414 * 179.97438 * 4 3 2 35 35 H 1.07999 * 120.07634 * 179.97438 * 5 4 3 36 36 H 0.97003 * 119.99870 * 0.02562 * 9 7 6 37 37 H 1.08997 * 109.47053 * 299.99767 * 12 10 9 38 38 H 1.08994 * 109.46831 * 60.00608 * 12 10 9 39 39 H 1.08999 * 109.46627 * 180.02562 * 12 10 9 40 40 H 1.08994 * 109.47865 * 54.99775 * 13 10 9 41 41 H 1.08998 * 109.46809 * 175.00510 * 13 10 9 42 42 H 1.08998 * 109.47765 * 300.00237 * 14 13 10 43 43 H 1.09000 * 109.47275 * 60.00390 * 14 13 10 44 44 H 1.00899 * 111.00103 * 303.95639 * 15 14 13 45 45 H 1.09000 * 109.46927 * 300.00376 * 16 15 14 46 46 H 1.09005 * 109.46866 * 60.00276 * 16 15 14 47 47 H 0.96998 * 120.00040 * 359.97438 * 19 17 16 48 48 H 0.96996 * 119.99850 * 180.02562 * 23 22 20 49 49 H 1.09005 * 109.47191 * 263.68805 * 29 28 2 50 50 H 1.09000 * 109.47478 * 23.68582 * 29 28 2 51 51 H 1.08999 * 109.47373 * 143.69022 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2080 0.0005 5 6 4.2812 0.0192 0.0005 6 6 3.5910 -1.1937 0.0005 7 6 4.3351 -2.4713 0.0000 8 8 3.7367 -3.5232 0.1136 9 7 5.6769 -2.4696 -0.1265 10 6 6.4142 -3.7355 -0.1265 11 1 5.8189 -4.5028 -0.6213 12 6 6.6975 -4.1607 1.3157 13 6 7.7369 -3.5553 -0.8741 14 6 7.4531 -3.2522 -2.3467 15 7 8.7231 -3.0797 -3.0647 16 6 8.4893 -2.7873 -4.4852 17 6 9.8118 -2.6178 -5.1875 18 8 10.8473 -2.7291 -4.5658 19 7 9.8440 -2.3414 -6.5062 20 6 11.0471 -2.1867 -7.1451 21 1 11.9691 -2.2859 -6.5914 22 6 11.0803 -1.9024 -8.5047 23 7 9.9584 -1.7812 -9.1783 24 14 12.7196 -1.6909 -9.3750 25 1 13.1789 -3.0051 -9.8916 26 1 12.5606 -0.7423 -10.5064 27 1 13.7224 -1.1570 -8.4187 28 6 2.1951 -1.1955 -0.0052 29 6 1.4416 -2.5006 -0.0115 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3635 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 1.6538 2.1325 -0.0005 34 1 4.1136 2.1474 0.0001 35 1 5.3612 0.0274 0.0005 36 1 6.1545 -1.6301 -0.2168 37 1 7.2929 -3.3934 1.8104 38 1 5.7552 -4.2891 1.8483 39 1 7.2465 -5.1024 1.3157 40 1 8.2936 -2.7281 -0.4337 41 1 8.3247 -4.4701 -0.7982 42 1 6.8965 -4.0793 -2.7873 43 1 6.8653 -2.3374 -2.4227 44 1 9.2866 -2.3613 -2.6353 45 1 7.9396 -3.6113 -4.9401 46 1 7.9088 -1.8691 -4.5763 47 1 9.0159 -2.2520 -7.0034 48 1 9.9816 -1.5831 -10.1275 49 1 1.3574 -2.8764 1.0082 50 1 0.4451 -2.3428 -0.4240 51 1 1.9773 -3.2265 -0.6232 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754019601.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:46 Heat of formation + Delta-G solvation = -60.951255 kcal Electronic energy + Delta-G solvation = -29460.205231 eV Core-core repulsion = 25358.715407 eV Total energy + Delta-G solvation = -4101.489825 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -40.80831 -39.08005 -38.29937 -36.93206 -35.08216 -33.98073 -33.75110 -32.60413 -31.52691 -31.19014 -29.27876 -27.92228 -26.80112 -26.23284 -24.36233 -23.86613 -22.24367 -21.44754 -21.05795 -20.48017 -19.23332 -17.91607 -17.73001 -16.75584 -16.18510 -16.07301 -15.90318 -15.54263 -15.21814 -14.98919 -14.65375 -14.40918 -14.28680 -13.90857 -13.74528 -13.73216 -13.55992 -13.36556 -13.09897 -13.02354 -12.82383 -12.62064 -12.45006 -12.25121 -12.14479 -12.01745 -11.98882 -11.68861 -11.52059 -11.32512 -11.24962 -11.12742 -11.04787 -10.94213 -10.39717 -10.21972 -9.83098 -9.51188 -9.41676 -9.12249 -8.92625 -8.46399 -8.06468 -7.96069 -6.41829 -3.82766 0.52655 0.96711 2.59899 2.89165 3.17791 3.26285 3.32057 3.48013 3.90515 4.03658 4.24429 4.34234 4.36787 4.47820 4.60966 4.76899 4.80698 4.84497 4.89205 4.98132 5.17083 5.19397 5.22857 5.23813 5.27709 5.28377 5.36042 5.42048 5.51720 5.52179 5.54098 5.59958 5.67612 5.75219 5.78458 5.90042 5.90845 5.95006 5.98592 6.01721 6.06466 6.08284 6.26498 6.26986 6.35433 6.55035 7.20158 7.24969 7.55016 7.65462 7.98065 8.06142 8.61065 9.17618 9.54168 10.05558 10.75916 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012407 B = 0.001848 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.237251 B =15144.421218 C =16528.475544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.100 4.100 3 C -0.092 4.092 4 C -0.131 4.131 5 C -0.087 4.087 6 C -0.137 4.137 7 C 0.559 3.441 8 O -0.531 6.531 9 N -0.720 5.720 10 C 0.143 3.857 11 H 0.092 0.908 12 C -0.162 4.162 13 C -0.125 4.125 14 C 0.059 3.941 15 N -0.669 5.669 16 C 0.051 3.949 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C -0.023 4.023 29 C -0.123 4.123 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.398 0.602 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.025 0.975 44 H 0.348 0.652 45 H 0.085 0.915 46 H 0.042 0.958 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.074 0.926 50 H 0.060 0.940 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.281 4.387 20.954 28.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.100 4.100 3 C -0.110 4.110 4 C -0.149 4.149 5 C -0.106 4.106 6 C -0.140 4.140 7 C 0.347 3.653 8 O -0.410 6.410 9 N -0.372 5.372 10 C 0.039 3.961 11 H 0.110 0.890 12 C -0.220 4.220 13 C -0.163 4.163 14 C -0.070 4.070 15 N -0.301 5.301 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.024 4.024 29 C -0.179 4.179 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.234 0.766 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.110 0.890 42 H 0.089 0.911 43 H 0.043 0.957 44 H 0.167 0.833 45 H 0.104 0.896 46 H 0.060 0.940 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.093 0.907 50 H 0.079 0.921 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.921 2.905 21.129 28.511 hybrid contribution 0.288 1.709 -0.910 1.958 sum -18.633 4.615 20.219 27.880 Atomic orbital electron populations 1.20838 0.90750 1.03038 1.02627 1.19797 0.96434 0.92324 1.01406 1.21242 0.94328 0.97614 0.97791 1.21070 0.94279 0.98072 1.01446 1.21279 0.99694 0.91837 0.97795 1.19792 0.93761 0.93027 1.07465 1.18249 0.82008 0.88763 0.76232 1.90721 1.67800 1.32985 1.49470 1.46092 1.06616 1.10056 1.74455 1.21014 0.92635 0.86051 0.96410 0.89023 1.22156 1.02080 1.01748 0.96003 1.21887 0.95875 1.04030 0.94545 1.21968 0.91514 1.00165 0.93389 1.60058 1.15733 1.52857 1.01485 1.21665 0.96913 1.00165 0.89436 1.19813 0.90075 0.84288 0.83211 1.90519 1.34438 1.56036 1.65799 1.41869 1.09449 1.61787 1.06941 1.19706 0.86458 1.45041 0.91686 0.87910 1.25275 0.98811 0.97335 0.96597 1.69617 1.26283 1.48953 1.09466 0.85847 0.81478 0.78162 0.78736 1.20373 1.20945 1.19429 1.19902 0.92024 0.95750 0.94722 1.21125 0.99044 0.94200 1.03566 0.90936 0.90980 0.91435 0.85617 0.85358 0.85712 0.76629 0.92468 0.92147 0.91290 0.91353 0.88992 0.91054 0.95659 0.83312 0.89639 0.93987 0.77457 0.91869 0.90748 0.92148 0.88585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 9.18 36.00 0.33 -0.34 16 2 C -0.10 -0.81 5.87 -104.68 -0.61 -1.43 16 3 C -0.09 -0.67 9.69 -39.49 -0.38 -1.05 16 4 C -0.13 -0.96 10.03 -39.64 -0.40 -1.35 16 5 C -0.09 -0.71 9.53 -39.18 -0.37 -1.08 16 6 C -0.14 -1.37 5.87 -104.97 -0.62 -1.99 16 7 C 0.56 6.16 7.67 -12.33 -0.09 6.06 16 8 O -0.53 -7.17 13.01 5.32 0.07 -7.10 16 9 N -0.72 -6.44 4.48 -54.75 -0.25 -6.69 16 10 C 0.14 1.32 2.57 -67.93 -0.17 1.15 16 11 H 0.09 0.99 7.58 -51.93 -0.39 0.60 16 12 C -0.16 -1.36 9.48 37.16 0.35 -1.01 16 13 C -0.13 -1.19 5.01 -26.73 -0.13 -1.33 16 14 C 0.06 0.71 5.57 -3.82 -0.02 0.69 16 15 N -0.67 -10.64 6.12 -115.05 -0.70 -11.35 16 16 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 17 C 0.44 10.49 7.82 -10.99 -0.09 10.41 16 18 O -0.58 -15.92 15.78 5.54 0.09 -15.83 16 19 N -0.56 -14.42 5.29 -10.96 -0.06 -14.48 16 20 C -0.30 -8.40 9.68 -14.94 -0.14 -8.55 16 21 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 24 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 28 C -0.02 -0.23 5.91 -104.23 -0.62 -0.84 16 29 C -0.12 -1.16 8.08 36.00 0.29 -0.87 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.39 6.58 -51.93 -0.34 0.05 16 32 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 33 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 35 H 0.13 0.75 6.45 -52.49 -0.34 0.41 16 36 H 0.40 2.84 6.68 -40.82 -0.27 2.57 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.03 0.29 7.75 -51.93 -0.40 -0.12 16 44 H 0.35 5.59 8.43 -39.29 -0.33 5.26 16 45 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 46 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 48 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.06 0.45 6.35 -51.93 -0.33 0.12 16 51 H 0.10 1.10 5.86 -51.93 -0.30 0.79 16 LS Contribution 416.92 15.07 6.28 6.28 Total: -1.00 -33.32 416.92 -9.72 -43.04 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -8.04 Total: 14.15 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -2.81 Total: -0.18 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.28 Total: -56.46 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: 0.16 Total: -22.93 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.32 -9.72 -43.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754019601.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.914 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds