Wall clock time and date at job start Wed Apr 1 2020 04:19:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.38382 * 119.92686 * 2 1
4 4 C 1.38335 * 120.28660 * 179.97438 * 3 2 1
5 5 C 1.37981 * 120.15173 * 0.02562 * 4 3 2
6 6 C 1.39558 * 119.84736 * 359.97426 * 5 4 3
7 7 C 1.47847 * 120.14334 * 179.97438 * 6 5 4
8 8 O 1.21548 * 120.00167 * 173.80576 * 7 6 5
9 9 N 1.34781 * 119.99890 * 353.80530 * 7 6 5
10 10 C 1.46497 * 119.99969 * 179.97438 * 9 7 6
11 11 H 1.08998 * 109.47474 * 35.00107 * 10 9 7
12 12 C 1.53006 * 109.46917 * 274.99998 * 10 9 7
13 13 C 1.53001 * 109.46945 * 155.00527 * 10 9 7
14 14 C 1.53001 * 109.46666 * 294.99547 * 13 10 9
15 15 N 1.46906 * 109.47049 * 180.02562 * 14 13 10
16 16 C 1.46901 * 111.00093 * 179.97438 * 15 14 13
17 17 C 1.50698 * 109.47064 * 180.02562 * 16 15 14
18 18 O 1.21295 * 120.00043 * 359.97438 * 17 16 15
19 19 N 1.34774 * 120.00002 * 180.02562 * 17 16 15
20 20 C 1.37097 * 120.00262 * 179.97438 * 19 17 16
21 21 H 1.08009 * 119.99708 * 359.97438 * 20 19 17
22 22 C 1.38945 * 120.00429 * 179.97438 * 20 19 17
23 23 N 1.31419 * 119.99906 * 0.02562 * 22 20 19
24 24 Si 1.86803 * 120.00221 * 179.97438 * 22 20 19
25 25 H 1.48495 * 109.46953 * 90.00347 * 24 22 20
26 26 H 1.48499 * 109.46909 * 210.00252 * 24 22 20
27 27 H 1.48494 * 109.46868 * 330.00141 * 24 22 20
28 28 C 1.37938 * 119.92416 * 180.24964 * 2 1 3
29 29 C 1.50698 * 120.07661 * 0.02741 * 28 2 1
30 30 H 1.09002 * 109.47122 * 90.00137 * 1 2 3
31 31 H 1.08998 * 109.47892 * 210.00229 * 1 2 3
32 32 H 1.09001 * 109.47483 * 330.00504 * 1 2 3
33 33 H 1.07992 * 119.85521 * 359.97186 * 3 2 1
34 34 H 1.08003 * 119.92414 * 179.97438 * 4 3 2
35 35 H 1.07999 * 120.07634 * 179.97438 * 5 4 3
36 36 H 0.97003 * 119.99870 * 0.02562 * 9 7 6
37 37 H 1.08997 * 109.47053 * 299.99767 * 12 10 9
38 38 H 1.08994 * 109.46831 * 60.00608 * 12 10 9
39 39 H 1.08999 * 109.46627 * 180.02562 * 12 10 9
40 40 H 1.08994 * 109.47865 * 54.99775 * 13 10 9
41 41 H 1.08998 * 109.46809 * 175.00510 * 13 10 9
42 42 H 1.08998 * 109.47765 * 300.00237 * 14 13 10
43 43 H 1.09000 * 109.47275 * 60.00390 * 14 13 10
44 44 H 1.00899 * 111.00103 * 303.95639 * 15 14 13
45 45 H 1.09000 * 109.46927 * 300.00376 * 16 15 14
46 46 H 1.09005 * 109.46866 * 60.00276 * 16 15 14
47 47 H 0.96998 * 120.00040 * 359.97438 * 19 17 16
48 48 H 0.96996 * 119.99850 * 180.02562 * 23 22 20
49 49 H 1.09005 * 109.47191 * 263.68805 * 29 28 2
50 50 H 1.09000 * 109.47478 * 23.68582 * 29 28 2
51 51 H 1.08999 * 109.47373 * 143.69022 * 29 28 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1974 1.1993 0.0000
4 6 3.5807 1.2080 0.0005
5 6 4.2812 0.0192 0.0005
6 6 3.5910 -1.1937 0.0005
7 6 4.3351 -2.4713 0.0000
8 8 3.7367 -3.5232 0.1136
9 7 5.6769 -2.4696 -0.1265
10 6 6.4142 -3.7355 -0.1265
11 1 5.8189 -4.5028 -0.6213
12 6 6.6975 -4.1607 1.3157
13 6 7.7369 -3.5553 -0.8741
14 6 7.4531 -3.2522 -2.3467
15 7 8.7231 -3.0797 -3.0647
16 6 8.4893 -2.7873 -4.4852
17 6 9.8118 -2.6178 -5.1875
18 8 10.8473 -2.7291 -4.5658
19 7 9.8440 -2.3414 -6.5062
20 6 11.0471 -2.1867 -7.1451
21 1 11.9691 -2.2859 -6.5914
22 6 11.0803 -1.9024 -8.5047
23 7 9.9584 -1.7812 -9.1783
24 14 12.7196 -1.6909 -9.3750
25 1 13.1789 -3.0051 -9.8916
26 1 12.5606 -0.7423 -10.5064
27 1 13.7224 -1.1570 -8.4187
28 6 2.1951 -1.1955 -0.0052
29 6 1.4416 -2.5006 -0.0115
30 1 -0.3633 0.0000 -1.0277
31 1 -0.3635 -0.8899 0.5138
32 1 -0.3634 0.8900 0.5137
33 1 1.6538 2.1325 -0.0005
34 1 4.1136 2.1474 0.0001
35 1 5.3612 0.0274 0.0005
36 1 6.1545 -1.6301 -0.2168
37 1 7.2929 -3.3934 1.8104
38 1 5.7552 -4.2891 1.8483
39 1 7.2465 -5.1024 1.3157
40 1 8.2936 -2.7281 -0.4337
41 1 8.3247 -4.4701 -0.7982
42 1 6.8965 -4.0793 -2.7873
43 1 6.8653 -2.3374 -2.4227
44 1 9.2866 -2.3613 -2.6353
45 1 7.9396 -3.6113 -4.9401
46 1 7.9088 -1.8691 -4.5763
47 1 9.0159 -2.2520 -7.0034
48 1 9.9816 -1.5831 -10.1275
49 1 1.3574 -2.8764 1.0082
50 1 0.4451 -2.3428 -0.4240
51 1 1.9773 -3.2265 -0.6232
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001754019601.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:19:43
Heat of formation + Delta-G solvation = -83.391499 kcal
Electronic energy + Delta-G solvation = -29461.178313 eV
Core-core repulsion = 25358.715407 eV
Total energy + Delta-G solvation = -4102.462907 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 2.60 seconds
Orbital eigenvalues (eV)
-41.53415 -40.18872 -39.72781 -37.93223 -36.34184 -35.73825 -34.52748 -33.32644
-33.25047 -32.26737 -30.33547 -28.53413 -27.79641 -27.37163 -25.84004 -24.79642
-23.25894 -22.16258 -21.78230 -21.22266 -21.04873 -19.91658 -18.45828 -17.85193
-17.55766 -17.00002 -16.66326 -16.58012 -16.44876 -16.06749 -15.94254 -15.70440
-15.35563 -15.15721 -15.00133 -14.78886 -14.33993 -14.25627 -13.94801 -13.80494
-13.69596 -13.53438 -13.49660 -13.32428 -13.25768 -13.04304 -12.87165 -12.75566
-12.66924 -12.53898 -12.42943 -12.27265 -12.13282 -12.03556 -11.84448 -11.76269
-11.51428 -10.65252 -10.37902 -10.18336 -10.02792 -9.75684 -9.53548 -9.33947
-8.47387 -5.96464 -0.12380 0.36945 1.37952 1.41762 1.54669 1.86449
2.03559 2.14885 2.28596 2.82838 2.87217 3.19684 3.47733 3.68144
3.79347 3.88620 3.90881 4.02561 4.07934 4.19038 4.26466 4.29675
4.37255 4.42477 4.45304 4.51721 4.59800 4.65458 4.66886 4.71799
4.77228 4.80533 4.83628 4.89130 4.93740 4.97528 5.07221 5.18038
5.19508 5.29040 5.31381 5.37668 5.40272 5.47911 5.57010 5.65358
5.87045 5.97576 6.08196 6.41768 6.52330 6.58676 7.11368 7.20614
7.54747 8.09609 8.70018
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012407 B = 0.001848 C = 0.001694
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2256.237251 B =15144.421218 C =16528.475544
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.107 4.107
3 C -0.093 4.093
4 C -0.133 4.133
5 C -0.091 4.091
6 C -0.158 4.158
7 C 0.555 3.445
8 O -0.565 6.565
9 N -0.710 5.710
10 C 0.149 3.851
11 H 0.073 0.927
12 C -0.156 4.156
13 C -0.113 4.113
14 C 0.063 3.937
15 N -0.681 5.681
16 C 0.065 3.935
17 C 0.438 3.562
18 O -0.622 6.622
19 N -0.573 5.573
20 C -0.334 4.334
21 H 0.080 0.920
22 C -0.015 4.015
23 N -0.921 5.921
24 Si 0.994 3.006
25 H -0.272 1.272
26 H -0.270 1.270
27 H -0.272 1.272
28 C -0.047 4.047
29 C -0.116 4.116
30 H 0.077 0.923
31 H 0.071 0.929
32 H 0.083 0.917
33 H 0.151 0.849
34 H 0.152 0.848
35 H 0.144 0.856
36 H 0.409 0.591
37 H 0.068 0.932
38 H 0.044 0.956
39 H 0.077 0.923
40 H 0.083 0.917
41 H 0.089 0.911
42 H 0.066 0.934
43 H 0.037 0.963
44 H 0.347 0.653
45 H 0.098 0.902
46 H 0.065 0.935
47 H 0.396 0.604
48 H 0.278 0.722
49 H 0.067 0.933
50 H 0.076 0.924
51 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.617 6.076 21.192 29.510
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C -0.108 4.108
3 C -0.111 4.111
4 C -0.151 4.151
5 C -0.110 4.110
6 C -0.161 4.161
7 C 0.344 3.656
8 O -0.446 6.446
9 N -0.363 5.363
10 C 0.044 3.956
11 H 0.092 0.908
12 C -0.214 4.214
13 C -0.151 4.151
14 C -0.066 4.066
15 N -0.314 5.314
16 C -0.068 4.068
17 C 0.225 3.775
18 O -0.508 6.508
19 N -0.211 5.211
20 C -0.464 4.464
21 H 0.098 0.902
22 C -0.214 4.214
23 N -0.562 5.562
24 Si 0.818 3.182
25 H -0.197 1.197
26 H -0.195 1.195
27 H -0.196 1.196
28 C -0.048 4.048
29 C -0.172 4.172
30 H 0.096 0.904
31 H 0.090 0.910
32 H 0.102 0.898
33 H 0.168 0.832
34 H 0.170 0.830
35 H 0.161 0.839
36 H 0.246 0.754
37 H 0.087 0.913
38 H 0.063 0.937
39 H 0.096 0.904
40 H 0.101 0.899
41 H 0.107 0.893
42 H 0.084 0.916
43 H 0.055 0.945
44 H 0.166 0.834
45 H 0.116 0.884
46 H 0.083 0.917
47 H 0.230 0.770
48 H 0.087 0.913
49 H 0.085 0.915
50 H 0.094 0.906
51 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -19.273 4.606 21.369 29.143
hybrid contribution 0.351 1.206 -0.939 1.568
sum -18.922 5.812 20.430 28.447
Atomic orbital electron populations
1.20884 0.89279 1.03866 1.03185 1.20089 0.97671 0.92068 1.00922
1.21611 0.94671 0.98246 0.96588 1.21430 0.94573 0.98706 1.00405
1.21527 1.00749 0.91413 0.97305 1.19862 0.94047 0.93164 1.09041
1.18534 0.82470 0.88874 0.75737 1.90706 1.68533 1.34196 1.51146
1.46008 1.06104 1.10464 1.73689 1.20903 0.92076 0.85787 0.96787
0.90847 1.22095 1.01562 1.02617 0.95115 1.21773 0.95939 1.04482
0.92949 1.22005 0.89837 1.00491 0.94262 1.60049 1.17763 1.52921
1.00658 1.21517 0.93329 1.01792 0.90153 1.20844 0.91861 0.82148
0.82611 1.90486 1.36638 1.57214 1.66483 1.41947 1.08905 1.62453
1.07755 1.19683 0.86750 1.47341 0.92583 0.90197 1.26077 1.02364
0.96320 0.96667 1.69679 1.27843 1.48689 1.09964 0.84905 0.77218
0.78447 0.77636 1.19714 1.19512 1.19622 1.20083 0.92347 0.96336
0.96007 1.21002 0.99603 0.93900 1.02720 0.90413 0.91007 0.89806
0.83164 0.82986 0.83862 0.75386 0.91253 0.93667 0.90447 0.89871
0.89257 0.91572 0.94485 0.83435 0.88353 0.91680 0.77024 0.91285
0.91484 0.90568 0.90972
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.16 9.18 71.24 0.65 -0.51 16
2 C -0.11 -1.62 5.87 -19.90 -0.12 -1.74 16
3 C -0.09 -1.15 9.69 22.33 0.22 -0.93 16
4 C -0.13 -1.63 10.03 22.23 0.22 -1.40 16
5 C -0.09 -1.33 9.53 22.53 0.21 -1.12 16
6 C -0.16 -3.12 5.87 -20.09 -0.12 -3.23 16
7 C 0.55 12.35 7.67 86.79 0.67 13.02 16
8 O -0.56 -16.00 13.01 -3.87 -0.05 -16.05 16
9 N -0.71 -12.13 4.48 -445.40 -1.99 -14.13 16
10 C 0.15 2.64 2.57 44.99 0.12 2.76 16
11 H 0.07 1.61 7.58 -2.39 -0.02 1.59 16
12 C -0.16 -2.49 9.48 71.98 0.68 -1.80 16
13 C -0.11 -1.99 5.01 30.59 0.15 -1.83 16
14 C 0.06 1.41 5.57 86.30 0.48 1.89 16
15 N -0.68 -20.79 6.12 -517.91 -3.17 -23.97 16
16 C 0.06 2.23 6.17 85.56 0.53 2.75 16
17 C 0.44 20.90 7.82 87.66 0.69 21.59 16
18 O -0.62 -34.37 15.78 -3.08 -0.05 -34.42 16
19 N -0.57 -29.62 5.29 -306.98 -1.62 -31.24 16
20 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16
21 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16
22 C -0.01 -0.78 5.50 84.92 0.47 -0.32 16
23 N -0.92 -49.89 13.05 21.66 0.28 -49.61 16
24 Si 0.99 42.92 29.55 68.60 2.03 44.95 16
25 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16
26 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16
27 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16
28 C -0.05 -0.91 5.91 -19.61 -0.12 -1.03 16
29 C -0.12 -2.30 8.08 71.24 0.58 -1.72 16
30 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16
31 H 0.07 0.72 6.58 -2.39 -0.02 0.70 16
32 H 0.08 0.56 8.08 -2.39 -0.02 0.54 16
33 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16
34 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16
35 H 0.14 1.39 6.45 -2.91 -0.02 1.38 16
36 H 0.41 5.12 6.68 -92.71 -0.62 4.51 16
37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16
38 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16
39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16
40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16
41 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16
42 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16
43 H 0.04 0.76 7.75 -2.39 -0.02 0.74 16
44 H 0.35 10.72 8.43 -89.69 -0.76 9.96 16
45 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16
46 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16
47 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16
48 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16
49 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16
50 H 0.08 1.17 6.35 -2.39 -0.02 1.15 16
51 H 0.07 1.78 5.86 -2.39 -0.01 1.76 16
Total: -1.00 -73.08 416.92 0.41 -72.67
By element:
Atomic # 1 Polarization: 44.78 SS G_CDS: -1.14 Total: 43.64 kcal
Atomic # 6 Polarization: 2.02 SS G_CDS: 6.12 Total: 8.14 kcal
Atomic # 7 Polarization: -112.44 SS G_CDS: -6.51 Total: -118.94 kcal
Atomic # 8 Polarization: -50.37 SS G_CDS: -0.10 Total: -50.46 kcal
Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal
Total: -73.08 0.41 -72.67 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001754019601.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.720 kcal
(2) G-P(sol) polarization free energy of solvation -73.078 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.798 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.407 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.671 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.391 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.61 seconds