Wall clock time and date at job start Wed Apr 1 2020 04:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38382 * 119.92686 * 2 1 4 4 C 1.38335 * 120.28660 * 179.97438 * 3 2 1 5 5 C 1.37981 * 120.15173 * 0.02562 * 4 3 2 6 6 C 1.39558 * 119.84736 * 359.97426 * 5 4 3 7 7 C 1.47847 * 120.14334 * 179.97438 * 6 5 4 8 8 O 1.21548 * 120.00167 * 173.80576 * 7 6 5 9 9 N 1.34781 * 119.99890 * 353.80530 * 7 6 5 10 10 C 1.46497 * 119.99969 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.47474 * 35.00107 * 10 9 7 12 12 C 1.53006 * 109.46917 * 274.99998 * 10 9 7 13 13 C 1.53001 * 109.46945 * 155.00527 * 10 9 7 14 14 C 1.53001 * 109.46666 * 294.99547 * 13 10 9 15 15 N 1.46906 * 109.47049 * 180.02562 * 14 13 10 16 16 C 1.46901 * 111.00093 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47064 * 180.02562 * 16 15 14 18 18 O 1.21295 * 120.00043 * 359.97438 * 17 16 15 19 19 N 1.34774 * 120.00002 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00262 * 179.97438 * 19 17 16 21 21 H 1.08009 * 119.99708 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00429 * 179.97438 * 20 19 17 23 23 N 1.31419 * 119.99906 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00221 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.46953 * 90.00347 * 24 22 20 26 26 H 1.48499 * 109.46909 * 210.00252 * 24 22 20 27 27 H 1.48494 * 109.46868 * 330.00141 * 24 22 20 28 28 C 1.37938 * 119.92416 * 180.24964 * 2 1 3 29 29 C 1.50698 * 120.07661 * 0.02741 * 28 2 1 30 30 H 1.09002 * 109.47122 * 90.00137 * 1 2 3 31 31 H 1.08998 * 109.47892 * 210.00229 * 1 2 3 32 32 H 1.09001 * 109.47483 * 330.00504 * 1 2 3 33 33 H 1.07992 * 119.85521 * 359.97186 * 3 2 1 34 34 H 1.08003 * 119.92414 * 179.97438 * 4 3 2 35 35 H 1.07999 * 120.07634 * 179.97438 * 5 4 3 36 36 H 0.97003 * 119.99870 * 0.02562 * 9 7 6 37 37 H 1.08997 * 109.47053 * 299.99767 * 12 10 9 38 38 H 1.08994 * 109.46831 * 60.00608 * 12 10 9 39 39 H 1.08999 * 109.46627 * 180.02562 * 12 10 9 40 40 H 1.08994 * 109.47865 * 54.99775 * 13 10 9 41 41 H 1.08998 * 109.46809 * 175.00510 * 13 10 9 42 42 H 1.08998 * 109.47765 * 300.00237 * 14 13 10 43 43 H 1.09000 * 109.47275 * 60.00390 * 14 13 10 44 44 H 1.00899 * 111.00103 * 303.95639 * 15 14 13 45 45 H 1.09000 * 109.46927 * 300.00376 * 16 15 14 46 46 H 1.09005 * 109.46866 * 60.00276 * 16 15 14 47 47 H 0.96998 * 120.00040 * 359.97438 * 19 17 16 48 48 H 0.96996 * 119.99850 * 180.02562 * 23 22 20 49 49 H 1.09005 * 109.47191 * 263.68805 * 29 28 2 50 50 H 1.09000 * 109.47478 * 23.68582 * 29 28 2 51 51 H 1.08999 * 109.47373 * 143.69022 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2080 0.0005 5 6 4.2812 0.0192 0.0005 6 6 3.5910 -1.1937 0.0005 7 6 4.3351 -2.4713 0.0000 8 8 3.7367 -3.5232 0.1136 9 7 5.6769 -2.4696 -0.1265 10 6 6.4142 -3.7355 -0.1265 11 1 5.8189 -4.5028 -0.6213 12 6 6.6975 -4.1607 1.3157 13 6 7.7369 -3.5553 -0.8741 14 6 7.4531 -3.2522 -2.3467 15 7 8.7231 -3.0797 -3.0647 16 6 8.4893 -2.7873 -4.4852 17 6 9.8118 -2.6178 -5.1875 18 8 10.8473 -2.7291 -4.5658 19 7 9.8440 -2.3414 -6.5062 20 6 11.0471 -2.1867 -7.1451 21 1 11.9691 -2.2859 -6.5914 22 6 11.0803 -1.9024 -8.5047 23 7 9.9584 -1.7812 -9.1783 24 14 12.7196 -1.6909 -9.3750 25 1 13.1789 -3.0051 -9.8916 26 1 12.5606 -0.7423 -10.5064 27 1 13.7224 -1.1570 -8.4187 28 6 2.1951 -1.1955 -0.0052 29 6 1.4416 -2.5006 -0.0115 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3635 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 1.6538 2.1325 -0.0005 34 1 4.1136 2.1474 0.0001 35 1 5.3612 0.0274 0.0005 36 1 6.1545 -1.6301 -0.2168 37 1 7.2929 -3.3934 1.8104 38 1 5.7552 -4.2891 1.8483 39 1 7.2465 -5.1024 1.3157 40 1 8.2936 -2.7281 -0.4337 41 1 8.3247 -4.4701 -0.7982 42 1 6.8965 -4.0793 -2.7873 43 1 6.8653 -2.3374 -2.4227 44 1 9.2866 -2.3613 -2.6353 45 1 7.9396 -3.6113 -4.9401 46 1 7.9088 -1.8691 -4.5763 47 1 9.0159 -2.2520 -7.0034 48 1 9.9816 -1.5831 -10.1275 49 1 1.3574 -2.8764 1.0082 50 1 0.4451 -2.3428 -0.4240 51 1 1.9773 -3.2265 -0.6232 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754019601.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:43 Heat of formation + Delta-G solvation = -83.391499 kcal Electronic energy + Delta-G solvation = -29461.178313 eV Core-core repulsion = 25358.715407 eV Total energy + Delta-G solvation = -4102.462907 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -41.53415 -40.18872 -39.72781 -37.93223 -36.34184 -35.73825 -34.52748 -33.32644 -33.25047 -32.26737 -30.33547 -28.53413 -27.79641 -27.37163 -25.84004 -24.79642 -23.25894 -22.16258 -21.78230 -21.22266 -21.04873 -19.91658 -18.45828 -17.85193 -17.55766 -17.00002 -16.66326 -16.58012 -16.44876 -16.06749 -15.94254 -15.70440 -15.35563 -15.15721 -15.00133 -14.78886 -14.33993 -14.25627 -13.94801 -13.80494 -13.69596 -13.53438 -13.49660 -13.32428 -13.25768 -13.04304 -12.87165 -12.75566 -12.66924 -12.53898 -12.42943 -12.27265 -12.13282 -12.03556 -11.84448 -11.76269 -11.51428 -10.65252 -10.37902 -10.18336 -10.02792 -9.75684 -9.53548 -9.33947 -8.47387 -5.96464 -0.12380 0.36945 1.37952 1.41762 1.54669 1.86449 2.03559 2.14885 2.28596 2.82838 2.87217 3.19684 3.47733 3.68144 3.79347 3.88620 3.90881 4.02561 4.07934 4.19038 4.26466 4.29675 4.37255 4.42477 4.45304 4.51721 4.59800 4.65458 4.66886 4.71799 4.77228 4.80533 4.83628 4.89130 4.93740 4.97528 5.07221 5.18038 5.19508 5.29040 5.31381 5.37668 5.40272 5.47911 5.57010 5.65358 5.87045 5.97576 6.08196 6.41768 6.52330 6.58676 7.11368 7.20614 7.54747 8.09609 8.70018 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012407 B = 0.001848 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.237251 B =15144.421218 C =16528.475544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.107 4.107 3 C -0.093 4.093 4 C -0.133 4.133 5 C -0.091 4.091 6 C -0.158 4.158 7 C 0.555 3.445 8 O -0.565 6.565 9 N -0.710 5.710 10 C 0.149 3.851 11 H 0.073 0.927 12 C -0.156 4.156 13 C -0.113 4.113 14 C 0.063 3.937 15 N -0.681 5.681 16 C 0.065 3.935 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.573 5.573 20 C -0.334 4.334 21 H 0.080 0.920 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.272 1.272 28 C -0.047 4.047 29 C -0.116 4.116 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.144 0.856 36 H 0.409 0.591 37 H 0.068 0.932 38 H 0.044 0.956 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.037 0.963 44 H 0.347 0.653 45 H 0.098 0.902 46 H 0.065 0.935 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.067 0.933 50 H 0.076 0.924 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.617 6.076 21.192 29.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.108 4.108 3 C -0.111 4.111 4 C -0.151 4.151 5 C -0.110 4.110 6 C -0.161 4.161 7 C 0.344 3.656 8 O -0.446 6.446 9 N -0.363 5.363 10 C 0.044 3.956 11 H 0.092 0.908 12 C -0.214 4.214 13 C -0.151 4.151 14 C -0.066 4.066 15 N -0.314 5.314 16 C -0.068 4.068 17 C 0.225 3.775 18 O -0.508 6.508 19 N -0.211 5.211 20 C -0.464 4.464 21 H 0.098 0.902 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.818 3.182 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.196 1.196 28 C -0.048 4.048 29 C -0.172 4.172 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.168 0.832 34 H 0.170 0.830 35 H 0.161 0.839 36 H 0.246 0.754 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.055 0.945 44 H 0.166 0.834 45 H 0.116 0.884 46 H 0.083 0.917 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.085 0.915 50 H 0.094 0.906 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.273 4.606 21.369 29.143 hybrid contribution 0.351 1.206 -0.939 1.568 sum -18.922 5.812 20.430 28.447 Atomic orbital electron populations 1.20884 0.89279 1.03866 1.03185 1.20089 0.97671 0.92068 1.00922 1.21611 0.94671 0.98246 0.96588 1.21430 0.94573 0.98706 1.00405 1.21527 1.00749 0.91413 0.97305 1.19862 0.94047 0.93164 1.09041 1.18534 0.82470 0.88874 0.75737 1.90706 1.68533 1.34196 1.51146 1.46008 1.06104 1.10464 1.73689 1.20903 0.92076 0.85787 0.96787 0.90847 1.22095 1.01562 1.02617 0.95115 1.21773 0.95939 1.04482 0.92949 1.22005 0.89837 1.00491 0.94262 1.60049 1.17763 1.52921 1.00658 1.21517 0.93329 1.01792 0.90153 1.20844 0.91861 0.82148 0.82611 1.90486 1.36638 1.57214 1.66483 1.41947 1.08905 1.62453 1.07755 1.19683 0.86750 1.47341 0.92583 0.90197 1.26077 1.02364 0.96320 0.96667 1.69679 1.27843 1.48689 1.09964 0.84905 0.77218 0.78447 0.77636 1.19714 1.19512 1.19622 1.20083 0.92347 0.96336 0.96007 1.21002 0.99603 0.93900 1.02720 0.90413 0.91007 0.89806 0.83164 0.82986 0.83862 0.75386 0.91253 0.93667 0.90447 0.89871 0.89257 0.91572 0.94485 0.83435 0.88353 0.91680 0.77024 0.91285 0.91484 0.90568 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 9.18 71.24 0.65 -0.51 16 2 C -0.11 -1.62 5.87 -19.90 -0.12 -1.74 16 3 C -0.09 -1.15 9.69 22.33 0.22 -0.93 16 4 C -0.13 -1.63 10.03 22.23 0.22 -1.40 16 5 C -0.09 -1.33 9.53 22.53 0.21 -1.12 16 6 C -0.16 -3.12 5.87 -20.09 -0.12 -3.23 16 7 C 0.55 12.35 7.67 86.79 0.67 13.02 16 8 O -0.56 -16.00 13.01 -3.87 -0.05 -16.05 16 9 N -0.71 -12.13 4.48 -445.40 -1.99 -14.13 16 10 C 0.15 2.64 2.57 44.99 0.12 2.76 16 11 H 0.07 1.61 7.58 -2.39 -0.02 1.59 16 12 C -0.16 -2.49 9.48 71.98 0.68 -1.80 16 13 C -0.11 -1.99 5.01 30.59 0.15 -1.83 16 14 C 0.06 1.41 5.57 86.30 0.48 1.89 16 15 N -0.68 -20.79 6.12 -517.91 -3.17 -23.97 16 16 C 0.06 2.23 6.17 85.56 0.53 2.75 16 17 C 0.44 20.90 7.82 87.66 0.69 21.59 16 18 O -0.62 -34.37 15.78 -3.08 -0.05 -34.42 16 19 N -0.57 -29.62 5.29 -306.98 -1.62 -31.24 16 20 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 21 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 22 C -0.01 -0.78 5.50 84.92 0.47 -0.32 16 23 N -0.92 -49.89 13.05 21.66 0.28 -49.61 16 24 Si 0.99 42.92 29.55 68.60 2.03 44.95 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 26 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 28 C -0.05 -0.91 5.91 -19.61 -0.12 -1.03 16 29 C -0.12 -2.30 8.08 71.24 0.58 -1.72 16 30 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.72 6.58 -2.39 -0.02 0.70 16 32 H 0.08 0.56 8.08 -2.39 -0.02 0.54 16 33 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 34 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 35 H 0.14 1.39 6.45 -2.91 -0.02 1.38 16 36 H 0.41 5.12 6.68 -92.71 -0.62 4.51 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.04 0.76 7.75 -2.39 -0.02 0.74 16 44 H 0.35 10.72 8.43 -89.69 -0.76 9.96 16 45 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 46 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 47 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16 48 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 49 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 50 H 0.08 1.17 6.35 -2.39 -0.02 1.15 16 51 H 0.07 1.78 5.86 -2.39 -0.01 1.76 16 Total: -1.00 -73.08 416.92 0.41 -72.67 By element: Atomic # 1 Polarization: 44.78 SS G_CDS: -1.14 Total: 43.64 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 6.12 Total: 8.14 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -6.51 Total: -118.94 kcal Atomic # 8 Polarization: -50.37 SS G_CDS: -0.10 Total: -50.46 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -73.08 0.41 -72.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754019601.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.720 kcal (2) G-P(sol) polarization free energy of solvation -73.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.61 seconds