Wall clock time and date at job start Wed Apr 1 2020 04:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38254 * 120.00514 * 2 1 4 4 C 1.38215 * 120.00568 * 179.97438 * 3 2 1 5 5 C 1.38257 * 119.99533 * 359.74146 * 4 3 2 6 6 C 1.38218 * 120.00215 * 0.51100 * 5 4 3 7 7 C 1.50697 * 120.00424 * 179.76770 * 6 5 4 8 8 H 1.09000 * 109.47374 * 179.72390 * 7 6 5 9 9 C 1.53006 * 109.47239 * 59.72252 * 7 6 5 10 10 C 1.50699 * 109.46956 * 299.72595 * 7 6 5 11 11 O 1.21285 * 120.00039 * 359.97438 * 10 7 6 12 12 N 1.34780 * 120.00249 * 179.97438 * 10 7 6 13 13 C 1.46500 * 120.00188 * 179.97438 * 12 10 7 14 14 H 1.09002 * 109.47216 * 325.00220 * 13 12 10 15 15 C 1.52995 * 109.46800 * 85.00183 * 13 12 10 16 16 C 1.52995 * 109.47133 * 204.99910 * 13 12 10 17 17 N 1.46904 * 109.46891 * 55.00303 * 16 13 12 18 18 C 1.46905 * 111.00076 * 180.02562 * 17 16 13 19 19 C 1.50701 * 109.46920 * 179.97438 * 18 17 16 20 20 O 1.21286 * 120.00318 * 359.97438 * 19 18 17 21 21 N 1.34776 * 119.99415 * 179.97438 * 19 18 17 22 22 C 1.37102 * 119.99704 * 180.02562 * 21 19 18 23 23 H 1.08003 * 120.00378 * 359.97438 * 22 21 19 24 24 C 1.38951 * 120.00094 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99710 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00140 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47114 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.47018 * 119.99740 * 26 24 22 29 29 H 1.48497 * 109.47227 * 239.99941 * 26 24 22 30 30 C 1.38223 * 119.99794 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47278 * 270.02691 * 1 2 3 32 32 H 1.09004 * 109.46729 * 30.02573 * 1 2 3 33 33 H 1.09004 * 109.47311 * 150.02043 * 1 2 3 34 34 H 1.08001 * 120.00009 * 359.97438 * 3 2 1 35 35 H 1.07993 * 120.00559 * 180.02562 * 4 3 2 36 36 H 1.08003 * 120.00011 * 180.28042 * 5 4 3 37 37 H 1.09001 * 109.47002 * 60.00070 * 9 7 6 38 38 H 1.08993 * 109.46955 * 180.02562 * 9 7 6 39 39 H 1.09000 * 109.47050 * 300.00336 * 9 7 6 40 40 H 0.96998 * 119.99818 * 0.02562 * 12 10 7 41 41 H 1.09002 * 109.47529 * 60.00471 * 15 13 12 42 42 H 1.09001 * 109.46987 * 180.02562 * 15 13 12 43 43 H 1.09002 * 109.47680 * 300.00006 * 15 13 12 44 44 H 1.08994 * 109.47406 * 174.99638 * 16 13 12 45 45 H 1.09003 * 109.47628 * 295.00507 * 16 13 12 46 46 H 1.00892 * 111.00315 * 56.04584 * 17 16 13 47 47 H 1.09000 * 109.46717 * 299.99600 * 18 17 16 48 48 H 1.08999 * 109.47160 * 59.99563 * 18 17 16 49 49 H 0.97002 * 120.00702 * 359.97438 * 21 19 18 50 50 H 0.97002 * 119.99842 * 180.02562 * 25 24 22 51 51 H 1.07994 * 119.99620 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 0.0065 6 6 3.5806 -1.1971 0.0012 7 6 4.3340 -2.5022 0.0024 8 1 3.6256 -3.3307 0.0026 9 6 5.2131 -2.5825 1.2521 10 6 5.2009 -2.5829 -1.2276 11 8 5.2061 -1.6706 -2.0268 12 7 5.9705 -3.6688 -1.4397 13 6 6.8129 -3.7475 -2.6357 14 1 6.3042 -3.2656 -3.4707 15 6 8.1424 -3.0384 -2.3706 16 6 7.0770 -5.2151 -2.9779 17 7 5.7976 -5.9238 -3.1149 18 6 6.0125 -7.3395 -3.4435 19 6 4.6807 -8.0323 -3.5752 20 8 3.6536 -7.4084 -3.4110 21 7 4.6310 -9.3453 -3.8755 22 6 3.4194 -9.9755 -3.9958 23 1 2.5048 -9.4200 -3.8496 24 6 3.3681 -11.3292 -4.3048 25 7 4.4809 -12.0053 -4.4822 26 14 1.7173 -12.1881 -4.4681 27 1 0.6252 -11.2122 -4.2231 28 1 1.5833 -12.7467 -5.8376 29 1 1.6312 -13.2881 -3.4742 30 6 2.1980 -1.1971 0.0005 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8898 -0.5143 33 1 -0.3634 -0.8902 -0.5135 34 1 1.6584 2.1326 -0.0004 35 1 4.1205 2.1325 0.0010 36 1 5.3517 -0.0002 0.0115 37 1 4.5861 -2.5242 2.1418 38 1 5.7583 -3.5263 1.2527 39 1 5.9215 -1.7541 1.2518 40 1 5.9661 -4.3986 -0.8008 41 1 8.6511 -3.5203 -1.5356 42 1 8.7690 -3.0965 -3.2606 43 1 7.9543 -1.9927 -2.1268 44 1 7.6283 -5.2759 -3.9162 45 1 7.6631 -5.6741 -2.1816 46 1 5.2091 -5.4780 -3.8026 47 1 6.5566 -7.4153 -4.3849 48 1 6.5911 -7.8128 -2.6502 49 1 5.4524 -9.8442 -4.0071 50 1 4.4451 -12.9503 -4.6983 51 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754284688.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:01 Heat of formation + Delta-G solvation = -64.791398 kcal Electronic energy + Delta-G solvation = -29846.503417 eV Core-core repulsion = 25744.847071 eV Total energy + Delta-G solvation = -4101.656346 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.43124 -39.07058 -38.30343 -36.68012 -34.57369 -34.29126 -33.65567 -32.42912 -31.27150 -30.98798 -29.53844 -27.61083 -26.93945 -25.15669 -24.83668 -23.31174 -22.42280 -21.93318 -20.77570 -19.68490 -19.24143 -17.91670 -17.07604 -16.92245 -16.48355 -15.86000 -15.61162 -15.32791 -14.91663 -14.77938 -14.58479 -14.39155 -14.05500 -13.93364 -13.76961 -13.58544 -13.53852 -13.25128 -13.14555 -12.81937 -12.59817 -12.49817 -12.40592 -12.32221 -12.01234 -11.84959 -11.79746 -11.66020 -11.55678 -11.49489 -11.08039 -11.06671 -10.99163 -10.89584 -10.36049 -10.24598 -9.69297 -9.54173 -8.99868 -8.84802 -8.62436 -8.50242 -8.12461 -7.98442 -6.44074 -3.84844 1.27429 1.35462 2.72365 3.14713 3.18369 3.25505 3.32788 3.74103 3.88235 4.04464 4.27585 4.40803 4.59182 4.75953 4.78784 4.89918 4.94907 5.05596 5.05769 5.10084 5.11170 5.21722 5.25728 5.28667 5.36191 5.41594 5.44277 5.45057 5.56161 5.56918 5.60099 5.63852 5.70432 5.75698 5.86116 5.90272 5.93136 5.98710 6.04876 6.07046 6.23045 6.40513 6.49641 6.54601 6.56686 6.95097 7.12734 7.53320 7.56976 7.61203 8.04189 8.31726 8.58755 9.15826 9.51917 10.03206 10.73700 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010949 B = 0.002158 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.715329 B =12971.022162 C =14970.180641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.123 4.123 4 C -0.121 4.121 5 C -0.090 4.090 6 C -0.059 4.059 7 C -0.074 4.074 8 H 0.108 0.892 9 C -0.139 4.139 10 C 0.522 3.478 11 O -0.540 6.540 12 N -0.706 5.706 13 C 0.145 3.855 14 H 0.085 0.915 15 C -0.160 4.160 16 C 0.048 3.952 17 N -0.667 5.667 18 C 0.050 3.950 19 C 0.440 3.560 20 O -0.582 6.582 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.281 1.281 30 C -0.111 4.111 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.405 0.595 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.042 0.958 45 H 0.077 0.923 46 H 0.351 0.649 47 H 0.043 0.957 48 H 0.086 0.914 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.089 21.110 10.789 24.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.141 4.141 4 C -0.139 4.139 5 C -0.108 4.108 6 C -0.059 4.059 7 C -0.096 4.096 8 H 0.126 0.874 9 C -0.196 4.196 10 C 0.308 3.692 11 O -0.416 6.416 12 N -0.357 5.357 13 C 0.040 3.960 14 H 0.103 0.897 15 C -0.219 4.219 16 C -0.082 4.082 17 N -0.299 5.299 18 C -0.082 4.082 19 C 0.226 3.774 20 O -0.466 6.466 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.207 1.207 30 C -0.129 4.129 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.240 0.760 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.095 0.905 46 H 0.170 0.830 47 H 0.061 0.939 48 H 0.104 0.896 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.358 21.849 10.932 24.817 hybrid contribution 0.114 -1.289 -0.948 1.604 sum 4.472 20.561 9.983 23.290 Atomic orbital electron populations 1.20781 0.91283 1.02829 1.02145 1.19843 0.95970 0.93074 1.00174 1.20981 0.94263 0.97322 1.01522 1.21053 0.94248 0.97832 1.00726 1.20838 0.99586 0.91777 0.98602 1.19286 0.93212 0.93597 0.99850 1.20308 0.97598 0.97360 0.94297 0.87402 1.21777 0.99340 1.02525 0.95967 1.20360 0.79574 0.82123 0.87179 1.90702 1.66121 1.38056 1.46761 1.45809 1.44238 1.20569 1.25131 1.20918 0.91157 0.95165 0.88748 0.89682 1.22129 0.96556 1.01159 1.02044 1.22313 0.92242 0.92853 1.00815 1.60059 1.13450 1.01481 1.54946 1.21681 0.97127 0.89452 0.99966 1.19802 0.90057 0.83213 0.84367 1.90531 1.35286 1.65344 1.55459 1.41876 1.09416 1.07446 1.61344 1.19748 0.86276 0.92191 1.44572 0.87889 1.25268 0.98874 0.96583 0.97283 1.69620 1.26687 1.09635 1.48373 0.85801 0.81668 0.79120 0.77774 1.19208 1.20764 1.20724 1.20939 0.93301 0.97803 1.00838 0.91326 0.91700 0.91429 0.86448 0.86343 0.86573 0.91268 0.91563 0.92053 0.75995 0.92342 0.91708 0.91963 0.93960 0.90478 0.82967 0.93857 0.89601 0.77481 0.91923 0.86011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 36.00 0.36 -0.58 16 2 C -0.09 -0.97 5.88 -104.62 -0.62 -1.58 16 3 C -0.12 -1.25 9.70 -39.58 -0.38 -1.64 16 4 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 5 C -0.09 -1.04 7.94 -39.58 -0.31 -1.36 16 6 C -0.06 -0.70 4.39 -104.62 -0.46 -1.16 16 7 C -0.07 -0.79 2.90 -92.92 -0.27 -1.06 16 8 H 0.11 1.12 7.88 -51.93 -0.41 0.71 16 9 C -0.14 -1.10 8.90 37.16 0.33 -0.77 16 10 C 0.52 6.70 6.99 -10.98 -0.08 6.62 16 11 O -0.54 -8.76 14.79 5.55 0.08 -8.68 16 12 N -0.71 -7.90 4.69 -53.81 -0.25 -8.15 16 13 C 0.15 1.60 2.81 -67.94 -0.19 1.41 16 14 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 15 C -0.16 -1.46 9.48 37.15 0.35 -1.10 16 16 C 0.05 0.53 5.24 -3.82 -0.02 0.51 16 17 N -0.67 -10.05 5.85 -115.05 -0.67 -10.72 16 18 C 0.05 0.84 6.17 -4.97 -0.03 0.81 16 19 C 0.44 10.17 7.82 -10.99 -0.09 10.08 16 20 O -0.58 -15.59 15.78 5.55 0.09 -15.50 16 21 N -0.56 -14.10 5.29 -10.96 -0.06 -14.15 16 22 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 23 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -24.35 13.05 55.50 0.72 -23.62 16 26 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 30 C -0.11 -1.28 9.33 -39.58 -0.37 -1.65 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 33 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.12 1.29 7.52 -52.48 -0.39 0.90 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.45 7.56 -51.93 -0.39 0.06 16 39 H 0.06 0.48 7.37 -51.93 -0.38 0.10 16 40 H 0.40 4.08 8.02 -40.82 -0.33 3.76 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.35 5.86 8.43 -39.30 -0.33 5.53 16 47 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 49 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 50 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 51 H 0.12 1.28 7.95 -52.49 -0.42 0.86 16 LS Contribution 424.36 15.07 6.40 6.40 Total: -1.00 -33.30 424.36 -9.50 -42.80 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: -8.37 Total: 16.77 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -2.41 Total: -1.06 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -0.26 Total: -56.65 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: 0.17 Total: -24.18 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -33.30 -9.50 -42.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754284688.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.987 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds