Wall clock time and date at job start Wed Apr 1 2020 04:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38254 * 120.00514 * 2 1 4 4 C 1.38215 * 120.00568 * 179.97438 * 3 2 1 5 5 C 1.38257 * 119.99533 * 359.74146 * 4 3 2 6 6 C 1.38218 * 120.00215 * 0.51100 * 5 4 3 7 7 C 1.50697 * 120.00424 * 179.76770 * 6 5 4 8 8 H 1.09000 * 109.47374 * 179.72390 * 7 6 5 9 9 C 1.53006 * 109.47239 * 59.72252 * 7 6 5 10 10 C 1.50699 * 109.46956 * 299.72595 * 7 6 5 11 11 O 1.21285 * 120.00039 * 359.97438 * 10 7 6 12 12 N 1.34780 * 120.00249 * 179.97438 * 10 7 6 13 13 C 1.46500 * 120.00188 * 179.97438 * 12 10 7 14 14 H 1.09002 * 109.47216 * 325.00220 * 13 12 10 15 15 C 1.52995 * 109.46800 * 85.00183 * 13 12 10 16 16 C 1.52995 * 109.47133 * 204.99910 * 13 12 10 17 17 N 1.46904 * 109.46891 * 55.00303 * 16 13 12 18 18 C 1.46905 * 111.00076 * 180.02562 * 17 16 13 19 19 C 1.50701 * 109.46920 * 179.97438 * 18 17 16 20 20 O 1.21286 * 120.00318 * 359.97438 * 19 18 17 21 21 N 1.34776 * 119.99415 * 179.97438 * 19 18 17 22 22 C 1.37102 * 119.99704 * 180.02562 * 21 19 18 23 23 H 1.08003 * 120.00378 * 359.97438 * 22 21 19 24 24 C 1.38951 * 120.00094 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99710 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00140 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47114 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.47018 * 119.99740 * 26 24 22 29 29 H 1.48497 * 109.47227 * 239.99941 * 26 24 22 30 30 C 1.38223 * 119.99794 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47278 * 270.02691 * 1 2 3 32 32 H 1.09004 * 109.46729 * 30.02573 * 1 2 3 33 33 H 1.09004 * 109.47311 * 150.02043 * 1 2 3 34 34 H 1.08001 * 120.00009 * 359.97438 * 3 2 1 35 35 H 1.07993 * 120.00559 * 180.02562 * 4 3 2 36 36 H 1.08003 * 120.00011 * 180.28042 * 5 4 3 37 37 H 1.09001 * 109.47002 * 60.00070 * 9 7 6 38 38 H 1.08993 * 109.46955 * 180.02562 * 9 7 6 39 39 H 1.09000 * 109.47050 * 300.00336 * 9 7 6 40 40 H 0.96998 * 119.99818 * 0.02562 * 12 10 7 41 41 H 1.09002 * 109.47529 * 60.00471 * 15 13 12 42 42 H 1.09001 * 109.46987 * 180.02562 * 15 13 12 43 43 H 1.09002 * 109.47680 * 300.00006 * 15 13 12 44 44 H 1.08994 * 109.47406 * 174.99638 * 16 13 12 45 45 H 1.09003 * 109.47628 * 295.00507 * 16 13 12 46 46 H 1.00892 * 111.00315 * 56.04584 * 17 16 13 47 47 H 1.09000 * 109.46717 * 299.99600 * 18 17 16 48 48 H 1.08999 * 109.47160 * 59.99563 * 18 17 16 49 49 H 0.97002 * 120.00702 * 359.97438 * 21 19 18 50 50 H 0.97002 * 119.99842 * 180.02562 * 25 24 22 51 51 H 1.07994 * 119.99620 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 0.0065 6 6 3.5806 -1.1971 0.0012 7 6 4.3340 -2.5022 0.0024 8 1 3.6256 -3.3307 0.0026 9 6 5.2131 -2.5825 1.2521 10 6 5.2009 -2.5829 -1.2276 11 8 5.2061 -1.6706 -2.0268 12 7 5.9705 -3.6688 -1.4397 13 6 6.8129 -3.7475 -2.6357 14 1 6.3042 -3.2656 -3.4707 15 6 8.1424 -3.0384 -2.3706 16 6 7.0770 -5.2151 -2.9779 17 7 5.7976 -5.9238 -3.1149 18 6 6.0125 -7.3395 -3.4435 19 6 4.6807 -8.0323 -3.5752 20 8 3.6536 -7.4084 -3.4110 21 7 4.6310 -9.3453 -3.8755 22 6 3.4194 -9.9755 -3.9958 23 1 2.5048 -9.4200 -3.8496 24 6 3.3681 -11.3292 -4.3048 25 7 4.4809 -12.0053 -4.4822 26 14 1.7173 -12.1881 -4.4681 27 1 0.6252 -11.2122 -4.2231 28 1 1.5833 -12.7467 -5.8376 29 1 1.6312 -13.2881 -3.4742 30 6 2.1980 -1.1971 0.0005 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8898 -0.5143 33 1 -0.3634 -0.8902 -0.5135 34 1 1.6584 2.1326 -0.0004 35 1 4.1205 2.1325 0.0010 36 1 5.3517 -0.0002 0.0115 37 1 4.5861 -2.5242 2.1418 38 1 5.7583 -3.5263 1.2527 39 1 5.9215 -1.7541 1.2518 40 1 5.9661 -4.3986 -0.8008 41 1 8.6511 -3.5203 -1.5356 42 1 8.7690 -3.0965 -3.2606 43 1 7.9543 -1.9927 -2.1268 44 1 7.6283 -5.2759 -3.9162 45 1 7.6631 -5.6741 -2.1816 46 1 5.2091 -5.4780 -3.8026 47 1 6.5566 -7.4153 -4.3849 48 1 6.5911 -7.8128 -2.6502 49 1 5.4524 -9.8442 -4.0071 50 1 4.4451 -12.9503 -4.6983 51 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754284688.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:00 Heat of formation + Delta-G solvation = -87.454230 kcal Electronic energy + Delta-G solvation = -29847.486151 eV Core-core repulsion = 25744.847071 eV Total energy + Delta-G solvation = -4102.639080 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.35627 -40.19308 -39.85130 -37.79018 -36.02859 -35.43425 -35.07717 -33.27729 -33.18987 -31.93662 -30.32702 -28.95318 -27.67561 -26.71125 -25.73851 -24.61808 -23.29152 -22.78037 -21.71916 -21.02905 -20.56438 -19.89958 -18.13864 -17.94956 -17.51838 -17.26430 -16.60166 -16.48699 -16.36739 -16.04338 -15.80629 -15.63246 -15.27102 -15.10628 -14.83448 -14.67549 -14.41382 -14.36508 -14.04763 -13.94590 -13.64739 -13.51009 -13.28522 -13.14927 -13.08154 -13.03215 -12.98225 -12.79334 -12.67335 -12.61654 -12.43407 -12.40434 -12.12365 -11.87334 -11.83852 -11.71587 -11.51398 -10.70960 -10.35077 -10.01113 -9.95529 -9.68776 -9.43875 -9.34709 -8.47129 -5.95415 0.44560 0.51798 1.36082 1.41614 1.55440 1.73043 2.06206 2.27474 2.30001 2.87848 2.93891 3.20493 3.52298 3.59401 3.76864 3.85200 4.03603 4.10026 4.17822 4.20671 4.29166 4.31493 4.33879 4.40136 4.52696 4.53512 4.58526 4.60046 4.66089 4.72777 4.76957 4.81023 4.82877 4.89061 4.91283 5.00857 5.06847 5.18407 5.23284 5.28730 5.32249 5.41048 5.58284 5.62603 5.69028 5.72829 5.87453 6.09357 6.15216 6.30622 6.60398 6.67573 7.13153 7.35879 7.57074 8.12683 8.70389 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010949 B = 0.002158 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.715329 B =12971.022162 C =14970.180641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.130 4.130 4 C -0.127 4.127 5 C -0.106 4.106 6 C -0.073 4.073 7 C -0.072 4.072 8 H 0.107 0.893 9 C -0.132 4.132 10 C 0.518 3.482 11 O -0.579 6.579 12 N -0.699 5.699 13 C 0.146 3.854 14 H 0.058 0.942 15 C -0.150 4.150 16 C 0.055 3.945 17 N -0.678 5.678 18 C 0.066 3.934 19 C 0.437 3.563 20 O -0.624 6.624 21 N -0.574 5.574 22 C -0.331 4.331 23 H 0.077 0.923 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.991 3.009 27 H -0.275 1.275 28 H -0.272 1.272 29 H -0.270 1.270 30 C -0.132 4.132 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.115 0.885 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.412 0.588 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.045 0.955 44 H 0.059 0.941 45 H 0.099 0.901 46 H 0.338 0.662 47 H 0.066 0.934 48 H 0.111 0.889 49 H 0.397 0.603 50 H 0.277 0.723 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.065 20.963 11.476 24.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.148 4.148 4 C -0.145 4.145 5 C -0.124 4.124 6 C -0.073 4.073 7 C -0.093 4.093 8 H 0.125 0.875 9 C -0.189 4.189 10 C 0.305 3.695 11 O -0.459 6.459 12 N -0.350 5.350 13 C 0.041 3.959 14 H 0.077 0.923 15 C -0.209 4.209 16 C -0.075 4.075 17 N -0.310 5.310 18 C -0.066 4.066 19 C 0.224 3.776 20 O -0.510 6.510 21 N -0.211 5.211 22 C -0.461 4.461 23 H 0.095 0.905 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.815 3.185 27 H -0.199 1.199 28 H -0.197 1.197 29 H -0.195 1.195 30 C -0.150 4.150 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.133 0.867 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.248 0.752 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.117 0.883 46 H 0.156 0.844 47 H 0.084 0.916 48 H 0.129 0.871 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.385 21.674 11.635 25.182 hybrid contribution -0.173 -1.186 -1.174 1.678 sum 5.212 20.487 10.461 23.586 Atomic orbital electron populations 1.20816 0.89677 1.03263 1.03106 1.20197 0.97339 0.92979 0.99469 1.21296 0.94338 0.98152 1.00992 1.21367 0.94767 0.98320 1.00064 1.20951 0.99674 0.92293 0.99447 1.19490 0.93564 0.94190 1.00078 1.20328 0.97549 0.96930 0.94490 0.87503 1.21758 0.99073 1.03290 0.94795 1.20745 0.79556 0.81847 0.87341 1.90676 1.67504 1.39525 1.48198 1.45808 1.43731 1.20239 1.25189 1.20929 0.91827 0.95326 0.87842 0.92340 1.22038 0.95513 0.99938 1.03419 1.22380 0.90563 0.92118 1.02395 1.60068 1.15521 1.00846 1.54530 1.21547 0.93177 0.89830 1.02065 1.20951 0.92080 0.82526 0.81994 1.90503 1.37730 1.66107 1.56698 1.41941 1.08775 1.08311 1.62106 1.19665 0.86626 0.93034 1.46792 0.90528 1.26013 1.02294 0.96624 0.96365 1.69672 1.28095 1.10123 1.48172 0.84898 0.77409 0.77905 0.78302 1.19930 1.19681 1.19507 1.21141 0.93535 0.98505 1.01851 0.90027 0.90521 0.91728 0.84170 0.84411 0.86742 0.90434 0.90126 0.92026 0.75158 0.90551 0.90272 0.93587 0.92302 0.88274 0.84385 0.91630 0.87090 0.76923 0.91321 0.85817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 10.01 71.23 0.71 -1.04 16 2 C -0.10 -2.11 5.88 -19.87 -0.12 -2.23 16 3 C -0.13 -2.56 9.70 22.27 0.22 -2.34 16 4 C -0.13 -2.65 10.05 22.27 0.22 -2.42 16 5 C -0.11 -2.49 7.94 22.27 0.18 -2.32 16 6 C -0.07 -1.76 4.39 -19.87 -0.09 -1.85 16 7 C -0.07 -1.55 2.90 -12.29 -0.04 -1.58 16 8 H 0.11 2.28 7.88 -2.39 -0.02 2.26 16 9 C -0.13 -2.00 8.90 71.98 0.64 -1.36 16 10 C 0.52 13.53 6.99 87.66 0.61 14.14 16 11 O -0.58 -19.51 14.79 -3.05 -0.05 -19.55 16 12 N -0.70 -15.22 4.69 -442.54 -2.08 -17.30 16 13 C 0.15 3.06 2.81 44.99 0.13 3.19 16 14 H 0.06 1.56 7.58 -2.39 -0.02 1.55 16 15 C -0.15 -2.46 9.48 71.98 0.68 -1.78 16 16 C 0.05 1.06 5.24 86.30 0.45 1.52 16 17 N -0.68 -19.52 5.85 -517.92 -3.03 -22.54 16 18 C 0.07 2.08 6.17 85.56 0.53 2.61 16 19 C 0.44 20.20 7.82 87.66 0.69 20.89 16 20 O -0.62 -34.17 15.78 -3.05 -0.05 -34.22 16 21 N -0.57 -28.88 5.29 -306.98 -1.62 -30.50 16 22 C -0.33 -18.70 9.68 84.04 0.81 -17.88 16 23 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 24 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 25 N -0.92 -49.06 13.05 21.66 0.28 -48.78 16 26 Si 0.99 42.76 29.55 68.60 2.03 44.78 16 27 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 28 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 29 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 30 C -0.13 -3.14 9.33 22.27 0.21 -2.93 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.01 8.09 -2.38 -0.02 0.99 16 33 H 0.06 1.04 8.09 -2.38 -0.02 1.02 16 34 H 0.14 2.02 8.06 -2.91 -0.02 1.99 16 35 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 36 H 0.11 2.63 7.52 -2.91 -0.02 2.61 16 37 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 0.97 7.56 -2.39 -0.02 0.95 16 39 H 0.06 0.93 7.37 -2.39 -0.02 0.92 16 40 H 0.41 7.76 8.02 -92.71 -0.74 7.02 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.34 11.27 8.43 -89.70 -0.76 10.51 16 47 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 49 H 0.40 18.84 7.90 -92.71 -0.73 18.11 16 50 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 51 H 0.12 2.73 7.95 -2.91 -0.02 2.70 16 Total: -1.00 -73.72 424.36 0.51 -73.21 By element: Atomic # 1 Polarization: 51.82 SS G_CDS: -1.28 Total: 50.54 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 6.31 Total: 4.36 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -6.45 Total: -119.12 kcal Atomic # 8 Polarization: -53.67 SS G_CDS: -0.09 Total: -53.77 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -73.72 0.51 -73.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754284688.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.248 kcal (2) G-P(sol) polarization free energy of solvation -73.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds