Wall clock time and date at job start Wed Apr 1 2020 04:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37957 * 120.06993 * 2 1 4 4 C 1.38360 * 120.14382 * 179.74655 * 3 2 1 5 5 C 1.38366 * 120.29302 * 0.27966 * 4 3 2 6 6 C 1.37955 * 120.14134 * 359.95571 * 5 4 3 7 7 C 1.50704 * 120.07323 * 180.02562 * 6 5 4 8 8 C 1.39576 * 120.07437 * 180.23300 * 2 1 3 9 9 C 1.47837 * 120.14496 * 0.02562 * 8 2 1 10 10 O 1.21555 * 119.99948 * 270.22938 * 9 8 2 11 11 N 1.34783 * 120.00157 * 90.23113 * 9 8 2 12 12 C 1.46495 * 119.99942 * 359.97438 * 11 9 8 13 13 C 1.46502 * 119.99911 * 180.02562 * 11 9 8 14 14 C 1.52993 * 109.47435 * 89.99848 * 13 11 9 15 15 C 1.53005 * 109.47246 * 180.02562 * 14 13 11 16 16 N 1.46897 * 109.46918 * 180.02562 * 15 14 13 17 17 C 1.46904 * 110.99922 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.47336 * 179.97438 * 17 16 15 19 19 O 1.21293 * 119.99502 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00069 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00062 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99825 * 359.97438 * 21 20 18 23 23 C 1.38943 * 119.99901 * 180.02562 * 21 20 18 24 24 N 1.31418 * 120.00502 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00074 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46983 * 59.99473 * 25 23 21 27 27 H 1.48501 * 109.47395 * 179.97438 * 25 23 21 28 28 H 1.48507 * 109.46879 * 300.00035 * 25 23 21 29 29 H 1.08994 * 109.46799 * 89.99624 * 1 2 3 30 30 H 1.08994 * 109.46726 * 209.99869 * 1 2 3 31 31 H 1.08995 * 109.47128 * 329.99791 * 1 2 3 32 32 H 1.08002 * 119.93252 * 0.03110 * 3 2 1 33 33 H 1.08001 * 119.85601 * 180.25892 * 4 3 2 34 34 H 1.07992 * 119.92771 * 179.97438 * 5 4 3 35 35 H 1.09004 * 109.47190 * 90.00112 * 7 6 5 36 36 H 1.09004 * 109.47366 * 210.00157 * 7 6 5 37 37 H 1.09001 * 109.46832 * 330.00176 * 7 6 5 38 38 H 1.08998 * 109.46749 * 90.00263 * 12 11 9 39 39 H 1.08999 * 109.47367 * 209.99804 * 12 11 9 40 40 H 1.09000 * 109.47190 * 330.00563 * 12 11 9 41 41 H 1.08997 * 109.47110 * 209.99873 * 13 11 9 42 42 H 1.09005 * 109.46936 * 329.99904 * 13 11 9 43 43 H 1.09005 * 109.46837 * 299.99823 * 14 13 11 44 44 H 1.08997 * 109.47162 * 59.99820 * 14 13 11 45 45 H 1.09005 * 109.46844 * 299.99558 * 15 14 13 46 46 H 1.08997 * 109.47400 * 59.99704 * 15 14 13 47 47 H 1.00901 * 111.00342 * 56.04320 * 16 15 14 48 48 H 1.09003 * 109.46925 * 300.00216 * 17 16 15 49 49 H 1.09002 * 109.46990 * 59.99924 * 17 16 15 50 50 H 0.97005 * 120.00212 * 0.02562 * 20 18 17 51 51 H 0.96993 * 120.00064 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1939 0.0000 4 6 3.5819 1.1957 0.0053 5 6 4.2814 0.0019 0.0048 6 6 3.6023 -1.1989 -0.0001 7 6 4.3657 -2.4983 -0.0001 8 6 2.2065 -1.2078 -0.0049 9 6 1.4722 -2.4910 -0.0107 10 8 1.1663 -3.0209 1.0396 11 7 1.1420 -3.0732 -1.1806 12 6 1.5103 -2.4343 -2.4464 13 6 0.4139 -4.3445 -1.1862 14 6 -1.0912 -4.0701 -1.1917 15 6 -1.8516 -5.3978 -1.1970 16 7 -3.2968 -5.1344 -1.2029 17 6 -4.0607 -6.3892 -1.2087 18 6 -5.5355 -6.0795 -1.2140 19 8 -5.9131 -4.9268 -1.2135 20 7 -6.4348 -7.0832 -1.2193 21 6 -7.7766 -6.8015 -1.2246 22 1 -8.1128 -5.7752 -1.2242 23 6 -8.7037 -7.8364 -1.2295 24 7 -8.2946 -9.0852 -1.2296 25 14 -10.5318 -7.4525 -1.2375 26 1 -10.8669 -6.6648 -2.4510 27 1 -11.3040 -8.7210 -1.2425 28 1 -10.8779 -6.6665 -0.0260 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3632 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.6583 2.1292 0.0005 33 1 4.1183 2.1331 0.0095 34 1 5.3613 0.0102 0.0085 35 1 4.5461 -2.8137 1.0276 36 1 3.7843 -3.2614 -0.5176 37 1 5.3189 -2.3596 -0.5102 38 1 2.4937 -2.7860 -2.7582 39 1 0.7747 -2.6889 -3.2094 40 1 1.5366 -1.3528 -2.3134 41 1 0.6828 -4.9132 -2.0763 42 1 0.6756 -4.9170 -0.2964 43 1 -1.3601 -3.5014 -0.3015 44 1 -1.3529 -3.4976 -2.0815 45 1 -1.5828 -5.9669 -2.0870 46 1 -1.5899 -5.9701 -0.3070 47 1 -3.5548 -4.5507 -1.9845 48 1 -3.8067 -6.9650 -2.0987 49 1 -3.8146 -6.9684 -0.3187 50 1 -6.1328 -8.0051 -1.2193 51 1 -8.9418 -9.8076 -1.2334 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754397344.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:39 Heat of formation + Delta-G solvation = -54.771735 kcal Electronic energy + Delta-G solvation = -29557.209764 eV Core-core repulsion = 25455.987903 eV Total energy + Delta-G solvation = -4101.221861 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.93457 -38.90603 -38.26283 -36.53831 -35.38629 -34.01840 -33.85992 -32.72423 -31.55525 -31.11922 -28.25808 -27.65239 -27.06412 -26.60222 -25.08789 -23.75069 -22.64122 -21.49671 -21.12314 -19.65359 -19.17488 -17.85616 -17.73189 -16.79393 -16.50687 -16.18500 -15.76739 -15.63482 -15.06647 -14.77259 -14.59320 -14.37729 -14.24095 -14.14647 -13.74488 -13.63880 -13.49399 -13.40181 -13.34611 -13.17279 -13.01655 -12.86352 -12.46567 -12.31698 -12.05471 -12.01763 -11.84418 -11.80866 -11.68276 -11.46798 -11.43688 -11.34293 -11.00764 -10.74563 -10.42386 -10.19234 -10.11360 -9.47645 -9.14620 -9.01972 -8.96517 -8.42766 -8.01648 -7.93009 -6.39198 -3.80056 0.75069 0.92944 2.30211 2.67676 3.22027 3.25290 3.27363 3.32028 3.93974 4.09669 4.14720 4.33608 4.37064 4.38435 4.52591 4.75864 4.81656 4.84797 4.95289 4.99985 5.08922 5.09764 5.18060 5.20277 5.21597 5.27022 5.28853 5.29932 5.35044 5.40295 5.41243 5.45319 5.49729 5.67578 5.69660 5.82179 5.85876 6.00655 6.01868 6.03582 6.06750 6.11493 6.13638 6.28957 6.33353 6.51363 7.02048 7.26577 7.57331 7.70684 7.86175 8.08846 8.64162 9.20297 9.57058 10.08816 10.78510 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024765 B = 0.001577 C = 0.001520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.365158 B =17747.886503 C =18415.545847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.046 4.046 3 C -0.128 4.128 4 C -0.098 4.098 5 C -0.129 4.129 6 C -0.049 4.049 7 C -0.120 4.120 8 C -0.122 4.122 9 C 0.567 3.433 10 O -0.525 6.525 11 N -0.609 5.609 12 C 0.078 3.922 13 C 0.116 3.884 14 C -0.131 4.131 15 C 0.063 3.937 16 N -0.669 5.669 17 C 0.051 3.949 18 C 0.441 3.559 19 O -0.584 6.584 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.062 0.938 45 H 0.026 0.974 46 H 0.073 0.927 47 H 0.348 0.652 48 H 0.043 0.957 49 H 0.086 0.914 50 H 0.392 0.608 51 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.262 15.073 -3.004 33.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.047 4.047 3 C -0.146 4.146 4 C -0.117 4.117 5 C -0.147 4.147 6 C -0.050 4.050 7 C -0.177 4.177 8 C -0.125 4.125 9 C 0.354 3.646 10 O -0.400 6.400 11 N -0.342 5.342 12 C -0.065 4.065 13 C -0.007 4.007 14 C -0.170 4.170 15 C -0.067 4.067 16 N -0.301 5.301 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.201 5.201 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.044 0.956 46 H 0.091 0.909 47 H 0.167 0.833 48 H 0.061 0.939 49 H 0.104 0.896 50 H 0.226 0.774 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 28.672 15.432 -1.771 32.609 hybrid contribution -0.590 -0.721 -0.988 1.358 sum 28.082 14.711 -2.758 31.822 Atomic orbital electron populations 1.20925 0.90394 1.03887 1.02964 1.19924 0.96279 0.91630 0.96868 1.20990 0.94280 0.97359 1.01934 1.21265 0.94209 0.98134 0.98045 1.20944 0.99943 0.91572 1.02241 1.19856 0.91768 0.95965 0.97406 1.20877 0.99827 0.93895 1.03107 1.19623 0.93455 0.93004 1.06456 1.18325 0.78350 0.84269 0.83615 1.90836 1.54004 1.64044 1.31157 1.47850 1.56682 1.23638 1.06068 1.21803 1.00688 0.98579 0.85412 1.21503 0.91335 0.84440 1.03417 1.21888 0.93475 0.98287 1.03368 1.21855 0.88287 0.96132 1.00414 1.60032 1.02696 1.16159 1.51246 1.21671 0.93636 0.91683 1.01180 1.19826 0.86901 0.86241 0.84400 1.90518 1.80527 1.20349 1.55373 1.41857 1.06004 1.07778 1.64429 1.19661 0.80754 0.94880 1.47656 0.87986 1.25259 1.00669 0.94673 0.97341 1.69606 1.35610 0.98541 1.50612 0.85913 0.81768 0.77434 0.79057 1.19951 1.20982 1.19884 0.90524 0.90915 0.90695 0.85423 0.85641 0.85551 0.90457 0.91562 0.90908 0.92502 0.90614 0.90943 0.90345 0.89513 0.90421 0.91889 0.95587 0.90903 0.83311 0.93926 0.89582 0.77449 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 9.62 36.01 0.35 -0.78 16 2 C -0.05 -0.43 5.49 -104.22 -0.57 -1.00 16 3 C -0.13 -0.94 9.69 -39.64 -0.38 -1.33 16 4 C -0.10 -0.64 10.04 -39.49 -0.40 -1.04 16 5 C -0.13 -0.89 9.69 -39.64 -0.38 -1.27 16 6 C -0.05 -0.42 5.91 -104.22 -0.62 -1.04 16 7 C -0.12 -0.86 9.62 36.01 0.35 -0.52 16 8 C -0.12 -1.23 3.91 -104.97 -0.41 -1.65 16 9 C 0.57 6.67 4.05 -12.33 -0.05 6.62 16 10 O -0.52 -8.31 16.68 5.32 0.09 -8.22 16 11 N -0.61 -5.68 2.87 -182.70 -0.52 -6.21 16 12 C 0.08 0.50 10.26 59.84 0.61 1.11 16 13 C 0.12 1.09 5.41 -4.04 -0.02 1.07 16 14 C -0.13 -1.48 5.80 -26.73 -0.16 -1.63 16 15 C 0.06 0.80 5.69 -3.82 -0.02 0.78 16 16 N -0.67 -11.30 6.13 -115.05 -0.70 -12.00 16 17 C 0.05 0.93 6.17 -4.97 -0.03 0.90 16 18 C 0.44 10.71 7.82 -10.99 -0.09 10.63 16 19 O -0.58 -16.28 15.78 5.55 0.09 -16.19 16 20 N -0.56 -14.61 5.29 -10.96 -0.06 -14.67 16 21 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.83 13.05 55.50 0.72 -24.11 16 25 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.83 7.08 -51.93 -0.37 0.46 16 31 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 32 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 34 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.52 7.08 -51.93 -0.37 0.15 16 37 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 38 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 40 H 0.07 0.47 6.55 -51.93 -0.34 0.13 16 41 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 42 H 0.09 0.94 7.42 -51.93 -0.39 0.56 16 43 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.35 5.95 8.43 -39.29 -0.33 5.62 16 48 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 49 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 50 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 51 H 0.27 7.08 8.31 -40.82 -0.34 6.75 16 LS Contribution 424.71 15.07 6.40 6.40 Total: -1.00 -34.88 424.71 -9.45 -44.33 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -8.38 Total: 11.64 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -2.06 Total: 2.72 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.56 Total: -56.98 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: 0.18 Total: -24.41 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -34.88 -9.45 -44.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754397344.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.439 kcal (2) G-P(sol) polarization free energy of solvation -34.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds