Wall clock time and date at job start Wed Apr 1 2020 04:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37957 * 120.06993 * 2 1 4 4 C 1.38360 * 120.14382 * 179.74655 * 3 2 1 5 5 C 1.38366 * 120.29302 * 0.27966 * 4 3 2 6 6 C 1.37955 * 120.14134 * 359.95571 * 5 4 3 7 7 C 1.50704 * 120.07323 * 180.02562 * 6 5 4 8 8 C 1.39576 * 120.07437 * 180.23300 * 2 1 3 9 9 C 1.47837 * 120.14496 * 0.02562 * 8 2 1 10 10 O 1.21555 * 119.99948 * 270.22938 * 9 8 2 11 11 N 1.34783 * 120.00157 * 90.23113 * 9 8 2 12 12 C 1.46495 * 119.99942 * 359.97438 * 11 9 8 13 13 C 1.46502 * 119.99911 * 180.02562 * 11 9 8 14 14 C 1.52993 * 109.47435 * 89.99848 * 13 11 9 15 15 C 1.53005 * 109.47246 * 180.02562 * 14 13 11 16 16 N 1.46897 * 109.46918 * 180.02562 * 15 14 13 17 17 C 1.46904 * 110.99922 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.47336 * 179.97438 * 17 16 15 19 19 O 1.21293 * 119.99502 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00069 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00062 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99825 * 359.97438 * 21 20 18 23 23 C 1.38943 * 119.99901 * 180.02562 * 21 20 18 24 24 N 1.31418 * 120.00502 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00074 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46983 * 59.99473 * 25 23 21 27 27 H 1.48501 * 109.47395 * 179.97438 * 25 23 21 28 28 H 1.48507 * 109.46879 * 300.00035 * 25 23 21 29 29 H 1.08994 * 109.46799 * 89.99624 * 1 2 3 30 30 H 1.08994 * 109.46726 * 209.99869 * 1 2 3 31 31 H 1.08995 * 109.47128 * 329.99791 * 1 2 3 32 32 H 1.08002 * 119.93252 * 0.03110 * 3 2 1 33 33 H 1.08001 * 119.85601 * 180.25892 * 4 3 2 34 34 H 1.07992 * 119.92771 * 179.97438 * 5 4 3 35 35 H 1.09004 * 109.47190 * 90.00112 * 7 6 5 36 36 H 1.09004 * 109.47366 * 210.00157 * 7 6 5 37 37 H 1.09001 * 109.46832 * 330.00176 * 7 6 5 38 38 H 1.08998 * 109.46749 * 90.00263 * 12 11 9 39 39 H 1.08999 * 109.47367 * 209.99804 * 12 11 9 40 40 H 1.09000 * 109.47190 * 330.00563 * 12 11 9 41 41 H 1.08997 * 109.47110 * 209.99873 * 13 11 9 42 42 H 1.09005 * 109.46936 * 329.99904 * 13 11 9 43 43 H 1.09005 * 109.46837 * 299.99823 * 14 13 11 44 44 H 1.08997 * 109.47162 * 59.99820 * 14 13 11 45 45 H 1.09005 * 109.46844 * 299.99558 * 15 14 13 46 46 H 1.08997 * 109.47400 * 59.99704 * 15 14 13 47 47 H 1.00901 * 111.00342 * 56.04320 * 16 15 14 48 48 H 1.09003 * 109.46925 * 300.00216 * 17 16 15 49 49 H 1.09002 * 109.46990 * 59.99924 * 17 16 15 50 50 H 0.97005 * 120.00212 * 0.02562 * 20 18 17 51 51 H 0.96993 * 120.00064 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1939 0.0000 4 6 3.5819 1.1957 0.0053 5 6 4.2814 0.0019 0.0048 6 6 3.6023 -1.1989 -0.0001 7 6 4.3657 -2.4983 -0.0001 8 6 2.2065 -1.2078 -0.0049 9 6 1.4722 -2.4910 -0.0107 10 8 1.1663 -3.0209 1.0396 11 7 1.1420 -3.0732 -1.1806 12 6 1.5103 -2.4343 -2.4464 13 6 0.4139 -4.3445 -1.1862 14 6 -1.0912 -4.0701 -1.1917 15 6 -1.8516 -5.3978 -1.1970 16 7 -3.2968 -5.1344 -1.2029 17 6 -4.0607 -6.3892 -1.2087 18 6 -5.5355 -6.0795 -1.2140 19 8 -5.9131 -4.9268 -1.2135 20 7 -6.4348 -7.0832 -1.2193 21 6 -7.7766 -6.8015 -1.2246 22 1 -8.1128 -5.7752 -1.2242 23 6 -8.7037 -7.8364 -1.2295 24 7 -8.2946 -9.0852 -1.2296 25 14 -10.5318 -7.4525 -1.2375 26 1 -10.8669 -6.6648 -2.4510 27 1 -11.3040 -8.7210 -1.2425 28 1 -10.8779 -6.6665 -0.0260 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3632 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.6583 2.1292 0.0005 33 1 4.1183 2.1331 0.0095 34 1 5.3613 0.0102 0.0085 35 1 4.5461 -2.8137 1.0276 36 1 3.7843 -3.2614 -0.5176 37 1 5.3189 -2.3596 -0.5102 38 1 2.4937 -2.7860 -2.7582 39 1 0.7747 -2.6889 -3.2094 40 1 1.5366 -1.3528 -2.3134 41 1 0.6828 -4.9132 -2.0763 42 1 0.6756 -4.9170 -0.2964 43 1 -1.3601 -3.5014 -0.3015 44 1 -1.3529 -3.4976 -2.0815 45 1 -1.5828 -5.9669 -2.0870 46 1 -1.5899 -5.9701 -0.3070 47 1 -3.5548 -4.5507 -1.9845 48 1 -3.8067 -6.9650 -2.0987 49 1 -3.8146 -6.9684 -0.3187 50 1 -6.1328 -8.0051 -1.2193 51 1 -8.9418 -9.8076 -1.2334 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754397344.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:38 Heat of formation + Delta-G solvation = -78.493246 kcal Electronic energy + Delta-G solvation = -29558.238405 eV Core-core repulsion = 25455.987903 eV Total energy + Delta-G solvation = -4102.250503 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.67338 -40.18234 -39.58058 -37.64920 -36.52134 -35.85983 -34.61482 -33.54984 -33.24951 -32.37762 -29.14531 -28.60447 -27.64050 -27.60483 -26.52793 -25.08891 -23.50610 -22.46219 -21.71577 -21.08926 -20.36639 -19.91344 -18.45207 -17.94719 -17.45772 -17.24824 -17.10654 -16.53004 -16.37667 -16.05180 -15.70638 -15.62829 -15.37158 -15.08931 -14.91070 -14.84028 -14.41165 -14.30423 -14.16969 -13.94482 -13.85558 -13.64480 -13.56101 -13.39596 -13.23777 -12.99445 -12.93662 -12.86778 -12.76675 -12.58878 -12.47071 -12.43565 -12.41363 -12.12610 -12.01439 -11.71247 -11.51596 -10.99091 -10.38074 -10.03281 -9.79974 -9.73216 -9.57367 -9.33408 -8.47558 -5.96828 0.15178 0.35657 1.39230 1.41049 1.44369 1.52319 1.94980 2.03273 2.28721 2.67583 2.92549 3.19343 3.43594 3.52536 3.74595 3.81415 3.96018 4.02449 4.09366 4.22362 4.28335 4.34791 4.35769 4.36853 4.44229 4.48622 4.50059 4.55903 4.60027 4.61747 4.64600 4.66068 4.71051 4.77098 4.80555 4.86978 4.87618 5.09876 5.13183 5.17783 5.22835 5.39453 5.45769 5.48637 5.50130 5.54837 5.87854 5.97709 6.09534 6.25397 6.40263 6.58759 7.02855 7.10912 7.54241 8.09686 8.69538 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024765 B = 0.001577 C = 0.001520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.365158 B =17747.886503 C =18415.545847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.130 4.130 4 C -0.095 4.095 5 C -0.128 4.128 6 C -0.061 4.061 7 C -0.118 4.118 8 C -0.144 4.144 9 C 0.566 3.434 10 O -0.580 6.580 11 N -0.604 5.604 12 C 0.075 3.925 13 C 0.119 3.881 14 C -0.119 4.119 15 C 0.067 3.933 16 N -0.690 5.690 17 C 0.066 3.934 18 C 0.436 3.564 19 O -0.625 6.625 20 N -0.572 5.572 21 C -0.337 4.337 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.994 3.006 26 H -0.271 1.271 27 H -0.269 1.269 28 H -0.273 1.273 29 H 0.084 0.916 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.147 0.853 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.112 0.888 42 H 0.069 0.931 43 H 0.041 0.959 44 H 0.073 0.927 45 H 0.055 0.945 46 H 0.070 0.930 47 H 0.345 0.655 48 H 0.072 0.928 49 H 0.100 0.900 50 H 0.397 0.603 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.063 15.663 -4.518 35.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.064 4.064 3 C -0.148 4.148 4 C -0.112 4.112 5 C -0.145 4.145 6 C -0.062 4.062 7 C -0.175 4.175 8 C -0.147 4.147 9 C 0.354 3.646 10 O -0.460 6.460 11 N -0.335 5.335 12 C -0.067 4.067 13 C -0.004 4.004 14 C -0.158 4.158 15 C -0.062 4.062 16 N -0.322 5.322 17 C -0.067 4.067 18 C 0.223 3.777 19 O -0.512 6.512 20 N -0.209 5.209 21 C -0.467 4.467 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.818 3.182 26 H -0.196 1.196 27 H -0.193 1.193 28 H -0.199 1.199 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.164 0.836 33 H 0.173 0.827 34 H 0.170 0.830 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.130 0.870 42 H 0.087 0.913 43 H 0.060 0.940 44 H 0.091 0.909 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.163 0.837 48 H 0.090 0.910 49 H 0.118 0.882 50 H 0.231 0.769 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 30.510 16.003 -3.325 34.612 hybrid contribution -1.081 -0.853 -0.531 1.476 sum 29.429 15.150 -3.856 33.323 Atomic orbital electron populations 1.20864 0.90967 1.02740 1.03138 1.20024 0.96126 0.92249 0.98047 1.21253 0.95039 0.97267 1.01247 1.21649 0.93903 0.99291 0.96393 1.21285 1.01292 0.90966 1.00983 1.20080 0.91225 0.97224 0.97646 1.20880 1.00733 0.93134 1.02712 1.19636 0.94284 0.92302 1.08431 1.18706 0.77801 0.84655 0.83397 1.90791 1.56427 1.65666 1.33146 1.47938 1.55582 1.23414 1.06607 1.22010 1.02098 0.98491 0.84123 1.21481 0.89996 0.84747 1.04169 1.21752 0.94657 0.97375 1.02052 1.21898 0.85727 0.97000 1.01592 1.60015 1.04953 1.15703 1.51579 1.21528 0.89249 0.92747 1.03137 1.20899 0.89239 0.85262 0.82272 1.90484 1.81890 1.22032 1.56757 1.41922 1.05676 1.08354 1.64944 1.19648 0.82494 0.94327 1.50230 0.90362 1.26058 1.04676 0.94338 0.96144 1.69666 1.37148 0.99091 1.50088 0.84973 0.76520 0.77791 0.78936 1.19565 1.19329 1.19879 0.89743 0.94235 0.89532 0.83553 0.82686 0.82971 0.91403 0.92624 0.88339 0.90737 0.89020 0.91005 0.86953 0.91277 0.94015 0.90875 0.92699 0.91110 0.83653 0.91045 0.88164 0.76911 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.28 9.62 71.24 0.69 -1.59 16 2 C -0.06 -1.17 5.49 -19.61 -0.11 -1.28 16 3 C -0.13 -1.71 9.69 22.23 0.22 -1.50 16 4 C -0.09 -0.97 10.04 22.33 0.22 -0.74 16 5 C -0.13 -1.45 9.69 22.23 0.22 -1.24 16 6 C -0.06 -0.99 5.91 -19.61 -0.12 -1.10 16 7 C -0.12 -1.60 9.62 71.24 0.69 -0.92 16 8 C -0.14 -2.94 3.91 -20.09 -0.08 -3.02 16 9 C 0.57 14.03 4.05 86.78 0.35 14.38 16 10 O -0.58 -19.94 16.68 -3.89 -0.06 -20.00 16 11 N -0.60 -11.24 2.87 -850.22 -2.44 -13.69 16 12 C 0.07 0.84 10.26 127.77 1.31 2.15 16 13 C 0.12 2.19 5.41 86.38 0.47 2.66 16 14 C -0.12 -2.69 5.80 30.59 0.18 -2.51 16 15 C 0.07 1.62 5.69 86.31 0.49 2.11 16 16 N -0.69 -23.06 6.13 -517.91 -3.17 -26.23 16 17 C 0.07 2.35 6.17 85.56 0.53 2.87 16 18 C 0.44 21.49 7.82 87.66 0.69 22.17 16 19 O -0.62 -35.90 15.78 -3.07 -0.05 -35.95 16 20 N -0.57 -30.11 5.29 -306.99 -1.62 -31.74 16 21 C -0.34 -19.59 9.68 84.04 0.81 -18.78 16 22 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 23 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 24 N -0.92 -50.17 13.05 21.66 0.28 -49.89 16 25 Si 0.99 43.52 29.55 68.60 2.03 45.54 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 28 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 29 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.04 1.00 7.08 -2.39 -0.02 0.98 16 31 H 0.09 1.35 8.09 -2.39 -0.02 1.33 16 32 H 0.15 1.29 8.06 -2.91 -0.02 1.26 16 33 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 34 H 0.15 0.89 8.06 -2.91 -0.02 0.87 16 35 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 36 H 0.05 0.86 7.08 -2.38 -0.02 0.84 16 37 H 0.10 0.76 8.09 -2.39 -0.02 0.75 16 38 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.09 0.75 8.07 -2.39 -0.02 0.74 16 40 H 0.07 0.85 6.55 -2.39 -0.02 0.84 16 41 H 0.11 1.32 8.07 -2.39 -0.02 1.30 16 42 H 0.07 1.55 7.42 -2.38 -0.02 1.53 16 43 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 44 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 46 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.34 11.77 8.43 -89.69 -0.76 11.01 16 48 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 50 H 0.40 19.75 7.90 -92.70 -0.73 19.02 16 51 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -79.15 424.71 1.42 -77.73 By element: Atomic # 1 Polarization: 41.30 SS G_CDS: -0.55 Total: 40.75 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 7.01 Total: 13.47 kcal Atomic # 7 Polarization: -114.59 SS G_CDS: -6.96 Total: -121.55 kcal Atomic # 8 Polarization: -55.84 SS G_CDS: -0.11 Total: -55.95 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -79.15 1.42 -77.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754397344.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.767 kcal (2) G-P(sol) polarization free energy of solvation -79.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds