Wall clock time and date at job start Wed Apr 1 2020 04:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38379 * 119.92633 * 2 1 4 4 C 1.38338 * 120.28861 * 180.25496 * 3 2 1 5 5 C 1.37975 * 120.14736 * 359.48403 * 4 3 2 6 6 C 1.50701 * 120.07579 * 180.22937 * 5 4 3 7 7 C 1.39559 * 119.85181 * 0.49072 * 5 4 3 8 8 C 1.47848 * 120.14502 * 179.74341 * 7 5 4 9 9 O 1.21551 * 119.99892 * 310.13496 * 8 7 5 10 10 N 1.34774 * 119.99678 * 130.13520 * 8 7 5 11 11 C 1.46501 * 120.00251 * 4.44253 * 10 8 7 12 12 C 1.46501 * 119.99866 * 184.43902 * 10 8 7 13 13 C 1.53003 * 109.47218 * 89.99875 * 12 10 8 14 14 C 1.52995 * 109.47264 * 180.02562 * 13 12 10 15 15 N 1.46903 * 109.47408 * 180.02562 * 14 13 12 16 16 C 1.46900 * 111.00239 * 179.97438 * 15 14 13 17 17 C 1.50692 * 109.47031 * 179.97438 * 16 15 14 18 18 O 1.21294 * 120.00101 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00191 * 179.97438 * 17 16 15 20 20 C 1.37092 * 120.00389 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99802 * 0.02562 * 20 19 17 22 22 C 1.38955 * 120.00116 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99989 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99721 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47114 * 60.00386 * 24 22 20 26 26 H 1.48503 * 109.46727 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47264 * 299.99973 * 24 22 20 28 28 C 1.37940 * 119.92698 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46752 * 90.00396 * 1 2 3 30 30 H 1.09003 * 109.47056 * 210.00353 * 1 2 3 31 31 H 1.09001 * 109.47210 * 330.00318 * 1 2 3 32 32 H 1.07992 * 119.85728 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.92747 * 179.74155 * 4 3 2 34 34 H 1.08995 * 109.47806 * 264.79159 * 6 5 4 35 35 H 1.08999 * 109.47075 * 24.80018 * 6 5 4 36 36 H 1.09003 * 109.47094 * 144.79424 * 6 5 4 37 37 H 1.08994 * 109.46988 * 93.07576 * 11 10 8 38 38 H 1.09003 * 109.46865 * 213.07476 * 11 10 8 39 39 H 1.09002 * 109.46938 * 333.06732 * 11 10 8 40 40 H 1.08994 * 109.47636 * 210.00338 * 12 10 8 41 41 H 1.09007 * 109.47212 * 330.00137 * 12 10 8 42 42 H 1.09002 * 109.47068 * 300.00453 * 13 12 10 43 43 H 1.09003 * 109.47015 * 60.00493 * 13 12 10 44 44 H 1.09002 * 109.47330 * 300.00149 * 14 13 12 45 45 H 1.08999 * 109.47444 * 59.99876 * 14 13 12 46 46 H 1.00897 * 110.99519 * 56.04693 * 15 14 13 47 47 H 1.09001 * 109.46872 * 300.00395 * 16 15 14 48 48 H 1.09001 * 109.46647 * 60.00340 * 16 15 14 49 49 H 0.97006 * 119.99882 * 0.02562 * 19 17 16 50 50 H 0.96994 * 119.99818 * 180.02562 * 23 22 20 51 51 H 1.08004 * 120.07284 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2080 -0.0053 5 6 4.2812 0.0194 0.0001 6 6 5.7882 0.0308 -0.0005 7 6 3.5911 -1.1937 0.0006 8 6 4.3352 -2.4712 0.0006 9 8 5.2272 -2.6551 -0.8044 10 7 4.0245 -3.4320 0.8933 11 6 2.8872 -3.2504 1.7988 12 6 4.8240 -4.6579 0.9581 13 6 5.9730 -4.4656 1.9500 14 6 6.8083 -5.7457 2.0172 15 7 7.9112 -5.5613 2.9699 16 6 8.7362 -6.7733 3.0613 17 6 9.8548 -6.5465 4.0451 18 8 9.9547 -5.4803 4.6147 19 7 10.7437 -7.5287 4.2930 20 6 11.7611 -7.3226 5.1885 21 1 11.8501 -6.3732 5.6956 22 6 12.6779 -8.3352 5.4437 23 7 12.5700 -9.4902 4.8263 24 14 14.0638 -8.0545 6.6644 25 1 13.4922 -7.7433 7.9992 26 1 14.8976 -9.2798 6.7570 27 1 14.9028 -6.9175 6.2079 28 6 2.1952 -1.1955 0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6539 2.1325 -0.0004 33 1 4.1136 2.1474 -0.0095 34 1 6.1520 -0.0646 -1.0235 35 1 6.1446 0.9685 0.4260 36 1 6.1581 -0.8033 0.5958 37 1 1.9959 -3.6951 1.3563 38 1 3.1004 -3.7352 2.7515 39 1 2.7194 -2.1859 1.9624 40 1 4.1949 -5.4850 1.2868 41 1 5.2295 -4.8799 -0.0291 42 1 6.6021 -3.6384 1.6212 43 1 5.5675 -4.2437 2.9371 44 1 6.1794 -6.5731 2.3457 45 1 7.2138 -5.9672 1.0300 46 1 7.5633 -5.2918 3.8779 47 1 8.1202 -7.6077 3.3968 48 1 9.1554 -7.0020 2.0814 49 1 10.6637 -8.3816 3.8379 50 1 13.2097 -10.1971 5.0047 51 1 1.6552 -2.1308 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754411432.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:45 Heat of formation + Delta-G solvation = -53.540021 kcal Electronic energy + Delta-G solvation = -29216.885527 eV Core-core repulsion = 25115.717077 eV Total energy + Delta-G solvation = -4101.168450 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.88357 -38.98228 -38.26474 -36.59726 -35.46509 -34.14616 -33.86288 -32.47626 -31.24120 -30.90521 -29.60254 -27.68011 -26.87927 -25.49301 -24.96802 -23.89016 -23.02625 -21.76112 -21.29368 -19.37690 -19.16092 -17.85340 -17.50948 -16.77495 -16.19614 -16.15362 -16.01190 -15.64606 -15.31493 -14.79854 -14.52426 -14.41264 -14.23253 -14.16242 -13.88685 -13.63832 -13.50271 -13.43431 -13.31617 -13.18890 -12.89578 -12.77653 -12.50221 -12.27803 -12.06240 -11.90522 -11.86097 -11.78268 -11.67111 -11.46154 -11.43344 -11.33683 -11.00621 -10.74121 -10.42231 -10.18991 -10.07626 -9.47522 -9.29401 -8.99758 -8.84776 -8.42615 -8.01562 -7.92891 -6.39107 -3.79890 0.62772 0.92539 2.40544 2.68240 3.22173 3.27479 3.31906 3.32167 3.94134 4.08174 4.14096 4.35040 4.36970 4.40458 4.54862 4.74169 4.77024 4.79810 4.94336 4.96827 5.10315 5.10749 5.14118 5.17949 5.26443 5.27272 5.29173 5.31766 5.33183 5.41207 5.49382 5.50258 5.53371 5.61593 5.69612 5.82370 5.86593 5.93884 6.02146 6.06833 6.08574 6.11255 6.16776 6.29361 6.33408 6.50931 7.03672 7.26748 7.57444 7.70794 7.87765 8.08963 8.64339 9.20442 9.57195 10.09008 10.78622 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023502 B = 0.001518 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.106848 B =18443.056634 C =18965.507241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.101 4.101 3 C -0.097 4.097 4 C -0.122 4.122 5 C -0.037 4.037 6 C -0.118 4.118 7 C -0.126 4.126 8 C 0.561 3.439 9 O -0.524 6.524 10 N -0.611 5.611 11 C 0.072 3.928 12 C 0.116 3.884 13 C -0.131 4.131 14 C 0.063 3.937 15 N -0.669 5.669 16 C 0.051 3.949 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 C -0.087 4.087 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.026 0.974 45 H 0.073 0.927 46 H 0.348 0.652 47 H 0.043 0.957 48 H 0.086 0.914 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.687 15.547 -10.732 33.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.101 4.101 3 C -0.115 4.115 4 C -0.140 4.140 5 C -0.038 4.038 6 C -0.174 4.174 7 C -0.129 4.129 8 C 0.349 3.651 9 O -0.400 6.400 10 N -0.343 5.343 11 C -0.071 4.071 12 C -0.006 4.006 13 C -0.170 4.170 14 C -0.067 4.067 15 N -0.301 5.301 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.201 5.201 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.106 4.106 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.044 0.956 45 H 0.091 0.909 46 H 0.167 0.833 47 H 0.061 0.939 48 H 0.104 0.896 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -26.598 16.265 -11.211 33.132 hybrid contribution 0.009 -1.140 0.890 1.446 sum -26.590 15.125 -10.321 32.285 Atomic orbital electron populations 1.20784 0.90741 1.02954 1.02495 1.19822 0.96292 0.92802 1.01166 1.21198 0.94146 0.97669 0.98512 1.21024 0.94091 0.97530 1.01334 1.19957 0.96617 0.91506 0.95750 1.20863 0.90169 1.02835 1.03544 1.19747 0.93784 0.93113 1.06223 1.18378 0.82906 0.83267 0.80587 1.90812 1.31157 1.79896 1.38121 1.47764 1.31372 1.18857 1.36355 1.22007 0.88099 1.03140 0.93815 1.21492 0.92593 0.85140 1.01424 1.21889 0.96485 0.99337 0.99295 1.21852 0.91657 0.95473 0.97698 1.60036 1.21914 1.33888 1.14309 1.21667 0.95092 0.91156 1.00248 1.19826 0.85345 0.85643 0.86561 1.90519 1.76125 1.26102 1.54021 1.41855 1.25120 1.14067 1.39021 1.19665 1.03955 1.00972 1.18392 0.87986 1.25260 0.99148 0.94945 0.98567 1.69606 1.37809 1.04125 1.42823 0.85911 0.80331 0.77532 0.80396 1.19953 1.20983 1.19882 1.21186 0.92439 0.98223 0.98724 0.91097 0.91428 0.91365 0.85659 0.85287 0.90047 0.91392 0.91132 0.92448 0.90828 0.90331 0.90384 0.89366 0.90496 0.91902 0.95571 0.90880 0.83303 0.93922 0.89576 0.77450 0.91846 0.85428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.46 10.01 36.01 0.36 -0.10 16 2 C -0.10 -0.67 5.87 -104.68 -0.61 -1.28 16 3 C -0.10 -0.64 9.69 -39.49 -0.38 -1.03 16 4 C -0.12 -0.94 9.67 -39.64 -0.38 -1.32 16 5 C -0.04 -0.37 5.91 -104.22 -0.62 -0.98 16 6 C -0.12 -1.18 8.89 36.01 0.32 -0.86 16 7 C -0.13 -1.26 4.86 -104.97 -0.51 -1.77 16 8 C 0.56 6.66 6.31 -12.33 -0.08 6.58 16 9 O -0.52 -8.05 15.41 5.32 0.08 -7.97 16 10 N -0.61 -5.84 2.87 -182.69 -0.52 -6.36 16 11 C 0.07 0.45 9.11 59.85 0.55 1.00 16 12 C 0.12 1.12 5.46 -4.04 -0.02 1.10 16 13 C -0.13 -1.50 5.80 -26.73 -0.16 -1.66 16 14 C 0.06 0.81 5.69 -3.82 -0.02 0.79 16 15 N -0.67 -11.36 6.13 -115.06 -0.70 -12.07 16 16 C 0.05 0.94 6.17 -4.98 -0.03 0.91 16 17 C 0.44 10.73 7.82 -10.99 -0.09 10.65 16 18 O -0.58 -16.31 15.78 5.55 0.09 -16.23 16 19 N -0.56 -14.63 5.29 -10.97 -0.06 -14.69 16 20 C -0.30 -8.54 9.68 -14.93 -0.14 -8.68 16 21 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.84 13.05 55.50 0.72 -24.12 16 24 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 28 C -0.09 -0.67 7.28 -39.19 -0.29 -0.96 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.22 8.08 -51.93 -0.42 -0.20 16 31 H 0.07 0.22 8.08 -51.93 -0.42 -0.20 16 32 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 33 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.54 8.05 -51.93 -0.42 0.12 16 36 H 0.07 0.83 7.09 -51.93 -0.37 0.46 16 37 H 0.06 0.26 7.59 -51.93 -0.39 -0.13 16 38 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 39 H 0.08 0.49 5.70 -51.93 -0.30 0.19 16 40 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 41 H 0.09 0.98 7.36 -51.93 -0.38 0.59 16 42 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.35 6.00 8.43 -39.29 -0.33 5.67 16 47 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 49 H 0.39 9.70 7.90 -40.82 -0.32 9.37 16 50 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 51 H 0.13 0.78 6.65 -52.48 -0.35 0.43 16 LS Contribution 420.96 15.07 6.34 6.34 Total: -1.00 -34.72 420.96 -9.55 -44.28 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -8.28 Total: 11.61 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -2.20 Total: 2.89 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -0.56 Total: -57.23 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: 0.17 Total: -24.20 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -34.72 -9.55 -44.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754411432.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.264 kcal (2) G-P(sol) polarization free energy of solvation -34.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds