Wall clock time and date at job start Wed Apr 1 2020 04:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38379 * 119.92633 * 2 1 4 4 C 1.38338 * 120.28861 * 180.25496 * 3 2 1 5 5 C 1.37975 * 120.14736 * 359.48403 * 4 3 2 6 6 C 1.50701 * 120.07579 * 180.22937 * 5 4 3 7 7 C 1.39559 * 119.85181 * 0.49072 * 5 4 3 8 8 C 1.47848 * 120.14502 * 179.74341 * 7 5 4 9 9 O 1.21551 * 119.99892 * 310.13496 * 8 7 5 10 10 N 1.34774 * 119.99678 * 130.13520 * 8 7 5 11 11 C 1.46501 * 120.00251 * 4.44253 * 10 8 7 12 12 C 1.46501 * 119.99866 * 184.43902 * 10 8 7 13 13 C 1.53003 * 109.47218 * 89.99875 * 12 10 8 14 14 C 1.52995 * 109.47264 * 180.02562 * 13 12 10 15 15 N 1.46903 * 109.47408 * 180.02562 * 14 13 12 16 16 C 1.46900 * 111.00239 * 179.97438 * 15 14 13 17 17 C 1.50692 * 109.47031 * 179.97438 * 16 15 14 18 18 O 1.21294 * 120.00101 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00191 * 179.97438 * 17 16 15 20 20 C 1.37092 * 120.00389 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99802 * 0.02562 * 20 19 17 22 22 C 1.38955 * 120.00116 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99989 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99721 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47114 * 60.00386 * 24 22 20 26 26 H 1.48503 * 109.46727 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47264 * 299.99973 * 24 22 20 28 28 C 1.37940 * 119.92698 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46752 * 90.00396 * 1 2 3 30 30 H 1.09003 * 109.47056 * 210.00353 * 1 2 3 31 31 H 1.09001 * 109.47210 * 330.00318 * 1 2 3 32 32 H 1.07992 * 119.85728 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.92747 * 179.74155 * 4 3 2 34 34 H 1.08995 * 109.47806 * 264.79159 * 6 5 4 35 35 H 1.08999 * 109.47075 * 24.80018 * 6 5 4 36 36 H 1.09003 * 109.47094 * 144.79424 * 6 5 4 37 37 H 1.08994 * 109.46988 * 93.07576 * 11 10 8 38 38 H 1.09003 * 109.46865 * 213.07476 * 11 10 8 39 39 H 1.09002 * 109.46938 * 333.06732 * 11 10 8 40 40 H 1.08994 * 109.47636 * 210.00338 * 12 10 8 41 41 H 1.09007 * 109.47212 * 330.00137 * 12 10 8 42 42 H 1.09002 * 109.47068 * 300.00453 * 13 12 10 43 43 H 1.09003 * 109.47015 * 60.00493 * 13 12 10 44 44 H 1.09002 * 109.47330 * 300.00149 * 14 13 12 45 45 H 1.08999 * 109.47444 * 59.99876 * 14 13 12 46 46 H 1.00897 * 110.99519 * 56.04693 * 15 14 13 47 47 H 1.09001 * 109.46872 * 300.00395 * 16 15 14 48 48 H 1.09001 * 109.46647 * 60.00340 * 16 15 14 49 49 H 0.97006 * 119.99882 * 0.02562 * 19 17 16 50 50 H 0.96994 * 119.99818 * 180.02562 * 23 22 20 51 51 H 1.08004 * 120.07284 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2080 -0.0053 5 6 4.2812 0.0194 0.0001 6 6 5.7882 0.0308 -0.0005 7 6 3.5911 -1.1937 0.0006 8 6 4.3352 -2.4712 0.0006 9 8 5.2272 -2.6551 -0.8044 10 7 4.0245 -3.4320 0.8933 11 6 2.8872 -3.2504 1.7988 12 6 4.8240 -4.6579 0.9581 13 6 5.9730 -4.4656 1.9500 14 6 6.8083 -5.7457 2.0172 15 7 7.9112 -5.5613 2.9699 16 6 8.7362 -6.7733 3.0613 17 6 9.8548 -6.5465 4.0451 18 8 9.9547 -5.4803 4.6147 19 7 10.7437 -7.5287 4.2930 20 6 11.7611 -7.3226 5.1885 21 1 11.8501 -6.3732 5.6956 22 6 12.6779 -8.3352 5.4437 23 7 12.5700 -9.4902 4.8263 24 14 14.0638 -8.0545 6.6644 25 1 13.4922 -7.7433 7.9992 26 1 14.8976 -9.2798 6.7570 27 1 14.9028 -6.9175 6.2079 28 6 2.1952 -1.1955 0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6539 2.1325 -0.0004 33 1 4.1136 2.1474 -0.0095 34 1 6.1520 -0.0646 -1.0235 35 1 6.1446 0.9685 0.4260 36 1 6.1581 -0.8033 0.5958 37 1 1.9959 -3.6951 1.3563 38 1 3.1004 -3.7352 2.7515 39 1 2.7194 -2.1859 1.9624 40 1 4.1949 -5.4850 1.2868 41 1 5.2295 -4.8799 -0.0291 42 1 6.6021 -3.6384 1.6212 43 1 5.5675 -4.2437 2.9371 44 1 6.1794 -6.5731 2.3457 45 1 7.2138 -5.9672 1.0300 46 1 7.5633 -5.2918 3.8779 47 1 8.1202 -7.6077 3.3968 48 1 9.1554 -7.0020 2.0814 49 1 10.6637 -8.3816 3.8379 50 1 13.2097 -10.1971 5.0047 51 1 1.6552 -2.1308 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754411432.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:43 Heat of formation + Delta-G solvation = -77.049022 kcal Electronic energy + Delta-G solvation = -29217.904954 eV Core-core repulsion = 25115.717077 eV Total energy + Delta-G solvation = -4102.187876 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.61907 -40.18499 -39.64702 -37.68063 -36.59223 -35.87190 -34.73233 -33.49179 -33.19002 -31.76854 -30.17042 -28.83558 -27.77680 -26.74266 -25.82198 -25.13362 -23.90842 -22.67233 -22.05567 -21.07772 -20.07883 -19.90924 -18.24369 -17.93666 -17.39631 -17.13458 -16.88794 -16.66342 -16.52501 -16.06034 -15.90893 -15.71098 -15.30860 -15.04901 -14.98911 -14.75931 -14.52117 -14.19265 -14.17286 -14.07228 -13.75175 -13.55482 -13.45256 -13.34835 -13.21078 -12.96979 -12.92568 -12.78120 -12.77089 -12.52959 -12.46947 -12.43341 -12.36999 -12.12507 -11.98833 -11.71505 -11.51720 -10.93993 -10.38278 -10.03414 -9.90347 -9.75447 -9.44485 -9.33918 -8.47673 -5.96917 -0.00495 0.35158 1.39263 1.41103 1.52324 1.58113 1.96591 2.03147 2.28732 2.71031 2.92232 3.19251 3.42422 3.52152 3.80588 3.84119 3.95569 4.03671 4.09470 4.21796 4.23723 4.28304 4.34803 4.39534 4.45709 4.50743 4.55751 4.58981 4.61678 4.63803 4.64613 4.68598 4.77128 4.81974 4.88006 4.90304 5.00401 5.08707 5.12577 5.18674 5.30829 5.32780 5.39351 5.48503 5.53690 5.58707 5.87628 5.96557 6.09326 6.27445 6.39439 6.58686 7.04434 7.10831 7.54090 8.09608 8.69444 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023502 B = 0.001518 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.106848 B =18443.056634 C =18965.507241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C -0.096 4.096 4 C -0.125 4.125 5 C -0.064 4.064 6 C -0.112 4.112 7 C -0.146 4.146 8 C 0.554 3.446 9 O -0.574 6.574 10 N -0.608 5.608 11 C 0.067 3.933 12 C 0.120 3.880 13 C -0.120 4.120 14 C 0.067 3.933 15 N -0.690 5.690 16 C 0.066 3.934 17 C 0.436 3.564 18 O -0.625 6.625 19 N -0.572 5.572 20 C -0.338 4.338 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.995 3.005 25 H -0.271 1.271 26 H -0.269 1.269 27 H -0.273 1.273 28 C -0.087 4.087 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.043 0.957 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.112 0.888 41 H 0.070 0.930 42 H 0.041 0.959 43 H 0.071 0.929 44 H 0.055 0.945 45 H 0.071 0.929 46 H 0.344 0.656 47 H 0.072 0.928 48 H 0.101 0.899 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.328 15.462 -10.335 35.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.099 4.099 3 C -0.114 4.114 4 C -0.143 4.143 5 C -0.065 4.065 6 C -0.168 4.168 7 C -0.149 4.149 8 C 0.343 3.657 9 O -0.454 6.454 10 N -0.339 5.339 11 C -0.074 4.074 12 C -0.003 4.003 13 C -0.159 4.159 14 C -0.062 4.062 15 N -0.323 5.323 16 C -0.066 4.066 17 C 0.223 3.777 18 O -0.512 6.512 19 N -0.209 5.209 20 C -0.468 4.468 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.818 3.182 25 H -0.196 1.196 26 H -0.193 1.193 27 H -0.199 1.199 28 C -0.106 4.106 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.170 0.830 33 H 0.164 0.836 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.130 0.870 41 H 0.089 0.911 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.090 0.910 46 H 0.163 0.837 47 H 0.090 0.910 48 H 0.119 0.881 49 H 0.231 0.769 50 H 0.088 0.912 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -29.287 16.151 -10.813 35.150 hybrid contribution 0.746 -1.072 0.756 1.509 sum -28.542 15.080 -10.057 33.811 Atomic orbital electron populations 1.20848 0.88560 1.04192 1.03238 1.20194 0.97829 0.92291 0.99597 1.21572 0.93745 0.98962 0.97143 1.21250 0.94904 0.97319 1.00800 1.20059 0.96206 0.92559 0.97631 1.20759 0.91276 1.02526 1.02257 1.19761 0.94881 0.92196 1.08032 1.18810 0.82410 0.84185 0.80297 1.90771 1.33416 1.80891 1.40320 1.47881 1.31797 1.18201 1.36030 1.22246 0.87665 1.03685 0.93849 1.21457 0.92612 0.86255 0.99982 1.21757 0.96450 0.97561 1.00092 1.21895 0.90917 0.96862 0.96518 1.60018 1.23765 1.33652 1.14836 1.21525 0.93554 0.92666 0.98902 1.20900 0.85854 0.84465 0.86472 1.90485 1.77288 1.27687 1.55733 1.41919 1.25249 1.14682 1.39020 1.19654 1.06074 1.00827 1.20226 0.90373 1.26057 1.00842 0.94389 0.99866 1.69665 1.38499 1.04520 1.43290 0.84972 0.77332 0.77874 0.78037 1.19579 1.19315 1.19868 1.21363 0.91350 0.99568 0.98279 0.90460 0.90361 0.90063 0.82957 0.83636 0.91482 0.89632 0.93837 0.89958 0.89593 0.90322 0.86991 0.91139 0.94054 0.91056 0.92693 0.91016 0.83688 0.91043 0.88122 0.76907 0.91227 0.83870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 10.01 71.24 0.71 0.17 16 2 C -0.10 -1.08 5.87 -19.90 -0.12 -1.19 16 3 C -0.10 -1.06 9.69 22.33 0.22 -0.84 16 4 C -0.12 -1.81 9.67 22.23 0.21 -1.60 16 5 C -0.06 -1.29 5.91 -19.61 -0.12 -1.41 16 6 C -0.11 -2.48 8.89 71.24 0.63 -1.84 16 7 C -0.15 -2.98 4.86 -20.09 -0.10 -3.08 16 8 C 0.55 13.79 6.31 86.79 0.55 14.34 16 9 O -0.57 -19.15 15.41 -3.88 -0.06 -19.21 16 10 N -0.61 -11.39 2.87 -850.18 -2.44 -13.83 16 11 C 0.07 0.71 9.11 127.77 1.16 1.87 16 12 C 0.12 2.23 5.46 86.38 0.47 2.70 16 13 C -0.12 -2.73 5.80 30.59 0.18 -2.55 16 14 C 0.07 1.63 5.69 86.30 0.49 2.12 16 15 N -0.69 -23.20 6.13 -517.94 -3.17 -26.37 16 16 C 0.07 2.36 6.17 85.55 0.53 2.89 16 17 C 0.44 21.52 7.82 87.65 0.69 22.21 16 18 O -0.63 -36.02 15.78 -3.07 -0.05 -36.07 16 19 N -0.57 -30.14 5.29 -306.99 -1.62 -31.77 16 20 C -0.34 -19.67 9.68 84.04 0.81 -18.86 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 23 N -0.92 -50.17 13.05 21.66 0.28 -49.89 16 24 Si 0.99 43.53 29.55 68.60 2.03 45.56 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 28 C -0.09 -1.22 7.28 22.53 0.16 -1.06 16 29 H 0.08 0.32 8.14 -2.39 -0.02 0.31 16 30 H 0.08 0.24 8.08 -2.39 -0.02 0.22 16 31 H 0.08 0.21 8.08 -2.39 -0.02 0.19 16 32 H 0.15 0.81 8.06 -2.91 -0.02 0.78 16 33 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.47 8.05 -2.39 -0.02 1.45 16 36 H 0.04 1.16 7.09 -2.39 -0.02 1.15 16 37 H 0.08 0.49 7.59 -2.39 -0.02 0.47 16 38 H 0.09 0.72 8.10 -2.39 -0.02 0.70 16 39 H 0.08 0.86 5.70 -2.39 -0.01 0.85 16 40 H 0.11 1.34 8.07 -2.39 -0.02 1.32 16 41 H 0.07 1.59 7.36 -2.38 -0.02 1.58 16 42 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.34 11.87 8.43 -89.70 -0.76 11.11 16 47 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 48 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 49 H 0.40 19.77 7.90 -92.70 -0.73 19.04 16 50 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 51 H 0.14 1.43 6.65 -2.91 -0.02 1.41 16 Total: -1.00 -78.83 420.96 1.38 -77.46 By element: Atomic # 1 Polarization: 40.96 SS G_CDS: -0.54 Total: 40.42 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 6.96 Total: 13.71 kcal Atomic # 7 Polarization: -114.90 SS G_CDS: -6.96 Total: -121.86 kcal Atomic # 8 Polarization: -55.17 SS G_CDS: -0.11 Total: -55.28 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -78.83 1.38 -77.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754411432.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.409 kcal (2) G-P(sol) polarization free energy of solvation -78.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds