Wall clock time and date at job start Wed Apr 1 2020 04:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38387 * 119.85563 * 2 1 4 4 C 1.37937 * 120.14855 * 180.02562 * 3 2 1 5 5 C 1.39589 * 119.85321 * 359.97438 * 4 3 2 6 6 C 1.47845 * 120.14858 * 179.97438 * 5 4 3 7 7 O 1.21546 * 120.00434 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99464 * 359.97438 * 6 5 4 9 9 C 1.46502 * 119.99830 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.46958 * 35.00331 * 9 8 6 11 11 C 1.53000 * 109.46861 * 274.99901 * 9 8 6 12 12 C 1.52997 * 109.47004 * 154.99864 * 9 8 6 13 13 H 1.09001 * 109.47502 * 295.00420 * 12 9 8 14 14 C 1.53006 * 109.47127 * 55.00263 * 12 9 8 15 15 N 1.46902 * 109.47094 * 174.99641 * 12 9 8 16 16 C 1.46904 * 110.99949 * 154.99749 * 15 12 9 17 17 C 1.50702 * 109.47107 * 180.02562 * 16 15 12 18 18 O 1.21292 * 119.99798 * 0.02562 * 17 16 15 19 19 N 1.34774 * 119.99799 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99979 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99611 * 359.97438 * 20 19 17 22 22 C 1.38947 * 120.00079 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00077 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00130 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47169 * 89.99707 * 24 22 20 26 26 H 1.48501 * 109.47458 * 210.00067 * 24 22 20 27 27 H 1.48500 * 109.47015 * 329.99961 * 24 22 20 28 28 C 1.39566 * 119.71104 * 0.24896 * 5 4 3 29 29 C 1.37979 * 119.85034 * 359.51495 * 28 5 4 30 30 C 1.50703 * 119.92561 * 180.22922 * 29 28 5 31 31 H 1.08993 * 109.47255 * 89.99366 * 1 2 3 32 32 H 1.09004 * 109.46640 * 209.99512 * 1 2 3 33 33 H 1.09002 * 109.47234 * 329.99031 * 1 2 3 34 34 H 1.08002 * 119.92168 * 0.02852 * 3 2 1 35 35 H 1.08001 * 120.07001 * 179.97438 * 4 3 2 36 36 H 0.97001 * 120.00108 * 359.97438 * 8 6 5 37 37 H 1.08994 * 109.47281 * 299.99657 * 11 9 8 38 38 H 1.09004 * 109.47031 * 60.00509 * 11 9 8 39 39 H 1.09002 * 109.46818 * 180.02562 * 11 9 8 40 40 H 1.09001 * 109.47002 * 299.99574 * 14 12 9 41 41 H 1.08993 * 109.46955 * 60.00011 * 14 12 9 42 42 H 1.09000 * 109.47050 * 179.97438 * 14 12 9 43 43 H 1.00900 * 110.99581 * 31.04993 * 15 12 9 44 44 H 1.09002 * 109.47300 * 300.00868 * 16 15 12 45 45 H 1.09006 * 109.46967 * 60.00497 * 16 15 12 46 46 H 0.97006 * 120.00439 * 359.97438 * 19 17 16 47 47 H 0.96997 * 119.99978 * 179.97438 * 23 22 20 48 48 H 1.08005 * 120.07203 * 179.74776 * 28 5 4 49 49 H 1.08996 * 109.46939 * 270.25857 * 30 29 28 50 50 H 1.09000 * 109.47056 * 30.25959 * 30 29 28 51 51 H 1.08998 * 109.46779 * 150.25441 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5752 1.2073 -0.0005 5 6 4.2763 0.0002 -0.0005 6 6 5.7547 0.0001 -0.0017 7 8 6.3625 -1.0525 -0.0021 8 7 6.4285 1.1674 -0.0032 9 6 7.8936 1.1674 -0.0049 10 1 8.2562 0.3252 -0.5943 11 6 8.4052 1.0427 1.4316 12 6 8.4028 2.4743 -0.6161 13 1 8.1132 2.5217 -1.6658 14 6 7.7936 3.6600 0.1350 15 7 9.8670 2.5271 -0.5091 16 6 10.4395 3.3967 -1.5454 17 6 11.9397 3.4254 -1.4046 18 8 12.4788 2.7841 -0.5275 19 7 12.6821 4.1636 -2.2532 20 6 14.0469 4.1893 -2.1255 21 1 14.5270 3.6183 -1.3445 22 6 14.8125 4.9499 -3.0007 23 7 16.1206 4.9750 -2.8780 24 14 13.9822 5.9370 -4.3519 25 1 13.6600 7.2954 -3.8460 26 1 14.8957 6.0466 -5.5176 27 1 12.7307 5.2535 -4.7664 28 6 3.5754 -1.2068 -0.0053 29 6 2.1957 -1.1997 0.0002 30 6 1.4372 -2.5020 0.0004 31 1 -0.3633 0.0001 -1.0276 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3634 0.8899 0.5140 34 1 1.6522 2.1334 0.0005 35 1 4.1116 2.1447 -0.0010 36 1 5.9435 2.0074 -0.0040 37 1 8.0426 1.8849 2.0208 38 1 8.0424 0.1115 1.8669 39 1 9.4952 1.0431 1.4304 40 1 6.7072 3.6209 0.0557 41 1 8.0832 3.6126 1.1847 42 1 8.1567 4.5911 -0.3001 43 1 10.2662 1.6015 -0.5526 44 1 10.1746 3.0115 -2.5301 45 1 10.0442 4.4062 -1.4318 46 1 12.2510 4.6762 -2.9549 47 1 16.6550 5.5057 -3.4892 48 1 4.1119 -2.1441 -0.0094 49 1 1.2543 -2.8160 -1.0272 50 1 2.0235 -3.2638 0.5142 51 1 0.4854 -2.3680 0.5143 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755266003.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:54 Heat of formation + Delta-G solvation = -74.177525 kcal Electronic energy + Delta-G solvation = -29500.204635 eV Core-core repulsion = 25398.141276 eV Total energy + Delta-G solvation = -4102.063359 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -41.51234 -40.41700 -39.93428 -38.49810 -36.10787 -35.48497 -34.46759 -33.74355 -33.07097 -32.03951 -30.15918 -28.70140 -28.28054 -27.56847 -26.02489 -24.95297 -23.36308 -22.90094 -21.30565 -21.02428 -20.81245 -20.32526 -18.84764 -17.72229 -17.50675 -16.99026 -16.77631 -16.41850 -16.33231 -16.14690 -15.98321 -15.60883 -15.40023 -15.09295 -15.04127 -14.76189 -14.58606 -14.41006 -14.06904 -13.95111 -13.73215 -13.59289 -13.49965 -13.44768 -13.13032 -13.09369 -12.86840 -12.80682 -12.65842 -12.54427 -12.41171 -12.24291 -11.97734 -11.95026 -11.88856 -11.68534 -11.50882 -11.07244 -10.44874 -10.25645 -10.24529 -9.81048 -9.55732 -9.38980 -8.40991 -6.02122 -0.17494 0.37627 1.30273 1.36091 1.44879 1.78755 1.95011 1.97860 2.23426 2.75861 2.82717 3.15220 3.37761 3.56065 3.67757 3.79425 3.91058 3.92725 4.02251 4.13156 4.19249 4.23861 4.28797 4.41691 4.44254 4.54651 4.61621 4.63543 4.71202 4.77069 4.79955 4.81797 4.83299 4.94165 4.94929 4.98896 5.03643 5.17338 5.25609 5.29634 5.32996 5.40636 5.42384 5.49949 5.53595 5.64825 5.89812 5.96798 6.02768 6.29579 6.46078 6.59871 6.88410 7.13446 7.39989 7.96941 8.76731 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024059 B = 0.001656 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.509385 B =16905.777602 C =17364.224861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.064 4.064 3 C -0.126 4.126 4 C -0.085 4.085 5 C -0.157 4.157 6 C 0.555 3.445 7 O -0.583 6.583 8 N -0.702 5.702 9 C 0.148 3.852 10 H 0.066 0.934 11 C -0.151 4.151 12 C 0.083 3.917 13 H 0.064 0.936 14 C -0.144 4.144 15 N -0.672 5.672 16 C 0.063 3.937 17 C 0.448 3.552 18 O -0.614 6.614 19 N -0.590 5.590 20 C -0.330 4.330 21 H 0.054 0.946 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.966 3.034 25 H -0.256 1.256 26 H -0.276 1.276 27 H -0.231 1.231 28 C -0.078 4.078 29 C -0.105 4.105 30 C -0.118 4.118 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.158 0.842 35 H 0.150 0.850 36 H 0.413 0.587 37 H 0.073 0.927 38 H 0.039 0.961 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.343 0.657 44 H 0.076 0.924 45 H 0.119 0.881 46 H 0.390 0.610 47 H 0.279 0.721 48 H 0.117 0.883 49 H 0.079 0.921 50 H 0.064 0.936 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -40.156 -4.070 1.825 40.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.064 4.064 3 C -0.143 4.143 4 C -0.103 4.103 5 C -0.160 4.160 6 C 0.344 3.656 7 O -0.465 6.465 8 N -0.356 5.356 9 C 0.042 3.958 10 H 0.084 0.916 11 C -0.209 4.209 12 C -0.027 4.027 13 H 0.082 0.918 14 C -0.202 4.202 15 N -0.306 5.306 16 C -0.070 4.070 17 C 0.236 3.764 18 O -0.498 6.498 19 N -0.232 5.232 20 C -0.459 4.459 21 H 0.072 0.928 22 C -0.214 4.214 23 N -0.575 5.575 24 Si 0.786 3.214 25 H -0.180 1.180 26 H -0.201 1.201 27 H -0.154 1.154 28 C -0.097 4.097 29 C -0.105 4.105 30 C -0.174 4.174 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.176 0.824 35 H 0.168 0.832 36 H 0.254 0.746 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.162 0.838 44 H 0.093 0.907 45 H 0.137 0.863 46 H 0.226 0.774 47 H 0.088 0.912 48 H 0.135 0.865 49 H 0.097 0.903 50 H 0.083 0.917 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -39.152 -4.658 2.830 39.530 hybrid contribution 0.805 -0.001 -1.346 1.569 sum -38.347 -4.660 1.484 38.658 Atomic orbital electron populations 1.21014 0.88839 1.04324 1.03608 1.20404 0.97890 0.92243 0.95848 1.21359 0.93546 0.98933 1.00479 1.21523 0.95191 0.96711 0.96923 1.19856 0.91405 0.95728 1.09061 1.18710 0.88100 0.83562 0.75194 1.90756 1.70901 1.32879 1.51920 1.45871 1.06560 1.08729 1.74439 1.20893 0.79693 0.97586 0.97581 0.91602 1.22037 1.01794 1.01389 0.95662 1.21763 0.87046 0.94673 0.99198 0.91784 1.21922 1.00237 0.96878 1.01141 1.60225 1.04147 1.16778 1.49406 1.21700 0.89236 1.01097 0.94941 1.20984 0.90474 0.81998 0.82931 1.90554 1.74860 1.47318 1.37074 1.42016 1.05924 1.44638 1.30652 1.19014 0.81837 1.28939 1.16142 0.92783 1.26130 0.95859 0.98498 1.00898 1.69809 1.06379 1.41717 1.39644 0.85350 0.79500 0.79218 0.77346 1.18003 1.20136 1.15413 1.21190 0.94234 0.97356 0.96892 1.20005 0.92638 0.96886 1.00986 1.20929 1.00496 0.92733 1.03266 0.89753 0.90085 0.89921 0.82450 0.83241 0.74622 0.90810 0.94156 0.91638 0.90095 0.92036 0.91649 0.83759 0.90664 0.86288 0.77439 0.91164 0.86498 0.90267 0.91716 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.54 9.60 71.23 0.68 0.14 16 2 C -0.06 -0.66 5.89 -19.81 -0.12 -0.78 16 3 C -0.13 -1.17 9.68 22.23 0.22 -0.96 16 4 C -0.08 -1.01 9.54 22.52 0.21 -0.80 16 5 C -0.16 -2.98 5.87 -20.09 -0.12 -3.09 16 6 C 0.56 13.20 7.74 86.79 0.67 13.87 16 7 O -0.58 -19.12 16.01 -3.86 -0.06 -19.18 16 8 N -0.70 -12.67 4.94 -445.41 -2.20 -14.87 16 9 C 0.15 3.25 2.30 44.99 0.10 3.35 16 10 H 0.07 1.78 7.58 -2.38 -0.02 1.76 16 11 C -0.15 -3.64 9.02 71.98 0.65 -2.99 16 12 C 0.08 1.64 2.66 44.92 0.12 1.76 16 13 H 0.06 1.12 7.80 -2.39 -0.02 1.10 16 14 C -0.14 -2.20 8.93 71.98 0.64 -1.56 16 15 N -0.67 -18.97 5.14 -495.54 -2.55 -21.51 16 16 C 0.06 1.83 5.97 85.56 0.51 2.34 16 17 C 0.45 20.08 7.82 87.66 0.69 20.77 16 18 O -0.61 -34.13 15.78 -3.07 -0.05 -34.18 16 19 N -0.59 -27.71 5.09 -306.98 -1.56 -29.27 16 20 C -0.33 -19.44 10.16 84.04 0.85 -18.59 16 21 H 0.05 3.81 7.39 -2.91 -0.02 3.78 16 22 C -0.02 -0.85 5.50 84.93 0.47 -0.39 16 23 N -0.93 -56.66 13.96 21.66 0.30 -56.35 16 24 Si 0.97 38.60 27.74 68.60 1.90 40.50 16 25 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 26 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 27 H -0.23 -7.70 6.52 99.48 0.65 -7.05 16 28 C -0.08 -1.50 9.25 22.53 0.21 -1.29 16 29 C -0.11 -1.46 5.87 -19.90 -0.12 -1.58 16 30 C -0.12 -1.08 9.59 71.24 0.68 -0.40 16 31 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.08 0.26 5.93 -2.38 -0.01 0.24 16 33 H 0.08 0.18 8.08 -2.39 -0.02 0.16 16 34 H 0.16 0.55 8.06 -2.91 -0.02 0.52 16 35 H 0.15 0.89 6.41 -2.91 -0.02 0.87 16 36 H 0.41 4.63 4.61 -92.71 -0.43 4.21 16 37 H 0.07 1.56 6.56 -2.39 -0.02 1.54 16 38 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 1.82 7.17 -2.39 -0.02 1.80 16 40 H 0.08 0.70 6.29 -2.39 -0.02 0.68 16 41 H 0.06 1.10 6.56 -2.39 -0.02 1.08 16 42 H 0.06 1.00 7.45 -2.39 -0.02 0.98 16 43 H 0.34 10.93 7.61 -89.69 -0.68 10.25 16 44 H 0.08 1.82 8.06 -2.39 -0.02 1.80 16 45 H 0.12 2.84 7.44 -2.38 -0.02 2.82 16 46 H 0.39 15.00 5.76 -92.70 -0.53 14.46 16 47 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 48 H 0.12 2.57 7.65 -2.91 -0.02 2.55 16 49 H 0.08 0.62 8.14 -2.39 -0.02 0.61 16 50 H 0.06 0.64 8.08 -2.39 -0.02 0.62 16 51 H 0.09 0.48 5.93 -2.39 -0.01 0.47 16 Total: -1.00 -84.49 407.92 1.43 -83.07 By element: Atomic # 1 Polarization: 42.71 SS G_CDS: -0.72 Total: 41.99 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 6.36 Total: 9.81 kcal Atomic # 7 Polarization: -116.01 SS G_CDS: -6.01 Total: -122.01 kcal Atomic # 8 Polarization: -53.25 SS G_CDS: -0.11 Total: -53.36 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 1.90 Total: 40.50 kcal Total: -84.49 1.43 -83.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755266003.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.888 kcal (2) G-P(sol) polarization free energy of solvation -84.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds