Wall clock time and date at job start Wed Apr 1 2020 04:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38239 * 120.00116 * 2 1 4 4 C 1.38234 * 120.00136 * 180.02562 * 3 2 1 5 5 C 1.38234 * 119.99786 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99704 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47186 * 89.99839 * 6 5 4 8 8 O 1.21280 * 120.00431 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00055 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99798 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.46752 * 175.21714 * 10 9 7 12 12 H 1.09000 * 109.47450 * 294.94270 * 11 10 9 13 13 C 1.53005 * 109.47008 * 174.94631 * 11 10 9 14 14 N 1.46902 * 109.47513 * 54.94281 * 11 10 9 15 15 C 1.46898 * 111.00268 * 192.90848 * 14 11 10 16 16 C 1.46905 * 110.99740 * 68.95396 * 14 11 10 17 17 C 1.50692 * 109.47189 * 190.00227 * 16 14 11 18 18 O 1.21306 * 119.99848 * 0.02562 * 17 16 14 19 19 N 1.34776 * 120.00448 * 180.02562 * 17 16 14 20 20 C 1.37092 * 120.00158 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00204 * 359.97438 * 20 19 17 22 22 C 1.38957 * 119.99912 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99776 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47151 * 90.00045 * 24 22 20 26 26 H 1.48498 * 109.47038 * 209.99929 * 24 22 20 27 27 H 1.48499 * 109.47341 * 330.00005 * 24 22 20 28 28 C 1.38235 * 120.00690 * 0.25351 * 5 4 3 29 29 C 1.38237 * 119.99997 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46818 * 90.00397 * 1 2 3 31 31 H 1.08999 * 109.47186 * 209.99868 * 1 2 3 32 32 H 1.08995 * 109.47114 * 330.00036 * 1 2 3 33 33 H 1.07998 * 119.99787 * 359.97187 * 3 2 1 34 34 H 1.07997 * 119.99924 * 179.97438 * 4 3 2 35 35 H 1.08998 * 109.47299 * 329.99800 * 6 5 4 36 36 H 1.09004 * 109.47308 * 209.99748 * 6 5 4 37 37 H 0.96998 * 120.00085 * 359.97438 * 9 7 6 38 38 H 1.09004 * 109.47215 * 55.22173 * 10 9 7 39 39 H 1.08998 * 109.47355 * 295.21695 * 10 9 7 40 40 H 1.09000 * 109.46972 * 299.99597 * 13 11 10 41 41 H 1.09000 * 109.46996 * 180.02562 * 13 11 10 42 42 H 1.08991 * 109.47310 * 59.99461 * 13 11 10 43 43 H 1.09005 * 109.46738 * 64.17331 * 15 14 11 44 44 H 1.08995 * 109.47181 * 184.17238 * 15 14 11 45 45 H 1.09001 * 109.47332 * 304.18007 * 15 14 11 46 46 H 1.08996 * 109.47219 * 310.00765 * 16 14 11 47 47 H 1.08997 * 109.46584 * 70.00466 * 16 14 11 48 48 H 0.96998 * 119.99472 * 0.02562 * 19 17 16 49 49 H 0.96995 * 119.99579 * 180.02562 * 23 22 20 50 50 H 1.07994 * 120.00370 * 179.72863 * 28 5 4 51 51 H 1.07999 * 120.00296 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 5.7787 0.0000 -0.0028 7 6 6.2821 -0.0005 1.4176 8 8 5.4948 -0.0014 2.3401 9 7 7.6074 -0.0012 1.6628 10 6 8.0968 -0.0023 3.0437 11 6 9.6220 -0.1231 3.0441 12 1 9.9099 -1.0920 2.6362 13 6 10.1432 0.0022 4.4771 14 7 10.1982 0.9465 2.2182 15 6 11.6184 0.6916 1.9423 16 6 10.0122 2.2588 2.8516 17 6 10.3887 3.3449 1.8772 18 8 10.7736 3.0543 0.7641 19 7 10.2977 4.6391 2.2422 20 6 10.6397 5.6271 1.3554 21 1 10.9825 5.3683 0.3644 22 6 10.5454 6.9614 1.7316 23 7 10.1279 7.2762 2.9372 24 14 11.0121 8.3076 0.5236 25 1 9.8164 8.7028 -0.2635 26 1 11.5255 9.4851 1.2687 27 1 12.0654 7.8053 -0.3948 28 6 3.5806 -1.1972 -0.0074 29 6 2.1982 -1.1972 0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 1.6582 2.1324 -0.0005 34 1 4.1205 2.1325 -0.0010 35 1 6.1416 0.8902 -0.5165 36 1 6.1417 -0.8898 -0.5173 37 1 8.2372 -0.0016 0.9251 38 1 7.6654 -0.8466 3.5814 39 1 7.8058 0.9272 3.5331 40 1 9.8554 0.9712 4.8850 41 1 11.2298 -0.0834 4.4773 42 1 9.7157 -0.7913 5.0899 43 1 11.7155 -0.2161 1.3466 44 1 12.0386 1.5337 1.3926 45 1 12.1547 0.5677 2.8831 46 1 8.9684 2.3773 3.1424 47 1 10.6458 2.3284 3.7358 48 1 9.9903 4.8714 3.1323 49 1 10.0618 8.2076 3.1997 50 1 4.1206 -2.1324 -0.0127 51 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755308759.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:06 Heat of formation + Delta-G solvation = -49.293288 kcal Electronic energy + Delta-G solvation = -30224.282416 eV Core-core repulsion = 26123.298118 eV Total energy + Delta-G solvation = -4100.984297 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.09799 -39.28687 -38.60129 -37.21126 -34.31327 -33.83750 -33.78171 -31.26516 -31.09736 -30.95550 -29.75835 -28.06918 -26.73803 -25.27664 -24.74188 -23.73065 -22.77184 -21.16105 -20.47410 -20.00164 -18.88429 -17.81921 -16.96691 -16.66192 -16.48174 -15.84598 -15.67608 -15.24595 -15.06312 -14.79249 -14.59936 -14.47668 -14.07776 -13.96476 -13.80353 -13.55512 -13.46186 -13.34505 -12.98448 -12.88991 -12.71379 -12.46880 -12.26269 -12.07094 -11.93125 -11.88908 -11.72064 -11.49271 -11.27430 -11.19937 -11.14740 -10.99125 -10.88037 -10.77949 -10.40970 -10.23152 -9.79056 -9.48649 -8.93468 -8.88975 -8.54031 -8.47059 -8.00084 -7.89859 -6.42887 -3.83786 1.26382 1.39844 2.78395 3.16522 3.25310 3.27511 3.30778 3.77954 3.88717 3.98696 4.22781 4.59769 4.69770 4.71352 4.84092 4.91822 4.96807 5.04264 5.08992 5.12284 5.20661 5.26067 5.35239 5.38904 5.42135 5.47437 5.48865 5.50038 5.58186 5.65495 5.66976 5.74829 5.78361 5.89672 5.94308 5.99778 6.03653 6.04397 6.14584 6.26525 6.36007 6.47688 6.53664 6.57423 6.59134 6.97661 7.20507 7.30903 7.53769 7.70668 8.04782 8.38841 8.60108 9.16688 9.53238 10.04585 10.74843 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008570 B = 0.002599 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3266.431716 B =10770.478695 C =13194.119496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.092 4.092 3 C -0.119 4.119 4 C -0.100 4.100 5 C -0.066 4.066 6 C -0.104 4.104 7 C 0.513 3.487 8 O -0.542 6.542 9 N -0.715 5.715 10 C 0.130 3.870 11 C 0.065 3.935 12 H 0.088 0.912 13 C -0.186 4.186 14 N -0.511 5.511 15 C 0.021 3.979 16 C 0.041 3.959 17 C 0.444 3.556 18 O -0.579 6.579 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C -0.103 4.103 29 C -0.122 4.122 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.411 0.589 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.095 0.905 45 H 0.017 0.983 46 H 0.087 0.913 47 H 0.051 0.949 48 H 0.391 0.609 49 H 0.272 0.728 50 H 0.118 0.882 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.495 -17.502 -1.662 20.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.137 4.137 4 C -0.118 4.118 5 C -0.066 4.066 6 C -0.144 4.144 7 C 0.299 3.701 8 O -0.420 6.420 9 N -0.367 5.367 10 C 0.006 3.994 11 C -0.044 4.044 12 H 0.106 0.894 13 C -0.245 4.245 14 N -0.235 5.235 15 C -0.127 4.127 16 C -0.090 4.090 17 C 0.229 3.771 18 O -0.464 6.464 19 N -0.200 5.200 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.542 5.542 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.121 4.121 29 C -0.140 4.140 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.247 0.753 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.114 0.886 45 H 0.036 0.964 46 H 0.105 0.895 47 H 0.069 0.931 48 H 0.225 0.775 49 H 0.081 0.919 50 H 0.136 0.864 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.056 -17.493 -2.109 20.801 hybrid contribution 0.859 0.972 0.613 1.434 sum -10.197 -16.521 -1.496 19.472 Atomic orbital electron populations 1.20773 0.91436 1.02661 1.02081 1.19893 0.95914 0.93304 1.00102 1.20986 0.94100 0.97493 1.01145 1.21038 0.94261 0.97649 0.98813 1.19275 0.93694 0.93535 1.00122 1.20677 0.93106 1.05516 0.95118 1.20476 0.82274 0.76203 0.91129 1.90707 1.55499 1.49572 1.46200 1.45837 1.06792 1.74765 1.09308 1.21360 0.92499 1.02040 0.83534 1.22028 0.93687 0.96193 0.92538 0.89404 1.22404 1.01857 1.02967 0.97271 1.61783 1.17238 1.00282 1.44201 1.22540 0.87190 1.03521 0.99402 1.21919 1.01850 0.89407 0.95817 1.19730 0.84984 0.83365 0.88982 1.90481 1.51578 1.82228 1.22079 1.41873 1.58238 1.04189 1.15715 1.19677 1.41142 0.84934 0.97063 0.87928 1.25266 0.97353 0.98448 0.96890 1.69612 1.46860 1.19427 1.18348 0.85871 0.78901 0.79818 0.79776 1.20382 1.20947 1.19439 1.20930 0.94182 0.97264 0.99742 1.20931 0.94045 0.97359 1.01655 0.91360 0.91720 0.91624 0.86152 0.85975 0.87586 0.88100 0.75261 0.91224 0.91681 0.91635 0.91864 0.91893 0.92160 0.88605 0.96432 0.89481 0.93121 0.77547 0.91857 0.86371 0.86334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.01 36.00 0.36 -0.52 16 2 C -0.09 -0.99 5.88 -104.62 -0.62 -1.60 16 3 C -0.12 -1.38 9.70 -39.58 -0.38 -1.76 16 4 C -0.10 -1.26 9.70 -39.58 -0.38 -1.64 16 5 C -0.07 -0.81 4.37 -104.62 -0.46 -1.27 16 6 C -0.10 -1.15 5.83 -29.04 -0.17 -1.32 16 7 C 0.51 7.13 7.82 -10.99 -0.09 7.04 16 8 O -0.54 -9.56 16.03 5.56 0.09 -9.47 16 9 N -0.71 -9.03 5.41 -60.29 -0.33 -9.35 16 10 C 0.13 1.61 4.94 -4.04 -0.02 1.59 16 11 C 0.06 0.74 2.47 -67.71 -0.17 0.57 16 12 H 0.09 0.89 8.04 -51.93 -0.42 0.47 16 13 C -0.19 -1.91 8.41 37.16 0.31 -1.60 16 14 N -0.51 -7.49 3.80 -236.33 -0.90 -8.39 16 15 C 0.02 0.31 9.10 60.06 0.55 0.85 16 16 C 0.04 0.70 4.30 -4.98 -0.02 0.68 16 17 C 0.44 10.07 7.43 -10.99 -0.08 9.99 16 18 O -0.58 -14.76 13.95 5.54 0.08 -14.68 16 19 N -0.56 -14.05 5.29 -10.96 -0.06 -14.10 16 20 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 21 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 22 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 23 N -0.90 -24.47 13.05 55.50 0.72 -23.75 16 24 Si 0.93 20.91 29.55 -169.99 -5.02 15.88 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 28 C -0.10 -1.17 9.70 -39.58 -0.38 -1.56 16 29 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 32 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 33 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.11 1.11 8.09 -51.93 -0.42 0.69 16 36 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16 37 H 0.41 4.91 8.06 -40.82 -0.33 4.58 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.91 6.68 -51.93 -0.35 0.57 16 40 H 0.06 0.73 6.54 -51.93 -0.34 0.39 16 41 H 0.06 0.65 6.73 -51.93 -0.35 0.30 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.10 1.75 5.79 -51.93 -0.30 1.45 16 45 H 0.02 0.23 6.61 -51.93 -0.34 -0.12 16 46 H 0.09 1.44 6.33 -51.93 -0.33 1.11 16 47 H 0.05 0.80 6.83 -51.93 -0.35 0.45 16 48 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 49 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 50 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 51 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 415.07 15.07 6.26 6.26 Total: -1.00 -32.91 415.07 -9.34 -42.25 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: -8.00 Total: 15.44 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -2.18 Total: -0.08 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.56 Total: -55.60 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: 0.17 Total: -24.15 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.91 -9.34 -42.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755308759.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.045 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds