Wall clock time and date at job start Wed Apr 1 2020 04:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38239 * 120.00116 * 2 1 4 4 C 1.38234 * 120.00136 * 180.02562 * 3 2 1 5 5 C 1.38234 * 119.99786 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99704 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47186 * 89.99839 * 6 5 4 8 8 O 1.21280 * 120.00431 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00055 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99798 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.46752 * 175.21714 * 10 9 7 12 12 H 1.09000 * 109.47450 * 294.94270 * 11 10 9 13 13 C 1.53005 * 109.47008 * 174.94631 * 11 10 9 14 14 N 1.46902 * 109.47513 * 54.94281 * 11 10 9 15 15 C 1.46898 * 111.00268 * 192.90848 * 14 11 10 16 16 C 1.46905 * 110.99740 * 68.95396 * 14 11 10 17 17 C 1.50692 * 109.47189 * 190.00227 * 16 14 11 18 18 O 1.21306 * 119.99848 * 0.02562 * 17 16 14 19 19 N 1.34776 * 120.00448 * 180.02562 * 17 16 14 20 20 C 1.37092 * 120.00158 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00204 * 359.97438 * 20 19 17 22 22 C 1.38957 * 119.99912 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99776 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47151 * 90.00045 * 24 22 20 26 26 H 1.48498 * 109.47038 * 209.99929 * 24 22 20 27 27 H 1.48499 * 109.47341 * 330.00005 * 24 22 20 28 28 C 1.38235 * 120.00690 * 0.25351 * 5 4 3 29 29 C 1.38237 * 119.99997 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46818 * 90.00397 * 1 2 3 31 31 H 1.08999 * 109.47186 * 209.99868 * 1 2 3 32 32 H 1.08995 * 109.47114 * 330.00036 * 1 2 3 33 33 H 1.07998 * 119.99787 * 359.97187 * 3 2 1 34 34 H 1.07997 * 119.99924 * 179.97438 * 4 3 2 35 35 H 1.08998 * 109.47299 * 329.99800 * 6 5 4 36 36 H 1.09004 * 109.47308 * 209.99748 * 6 5 4 37 37 H 0.96998 * 120.00085 * 359.97438 * 9 7 6 38 38 H 1.09004 * 109.47215 * 55.22173 * 10 9 7 39 39 H 1.08998 * 109.47355 * 295.21695 * 10 9 7 40 40 H 1.09000 * 109.46972 * 299.99597 * 13 11 10 41 41 H 1.09000 * 109.46996 * 180.02562 * 13 11 10 42 42 H 1.08991 * 109.47310 * 59.99461 * 13 11 10 43 43 H 1.09005 * 109.46738 * 64.17331 * 15 14 11 44 44 H 1.08995 * 109.47181 * 184.17238 * 15 14 11 45 45 H 1.09001 * 109.47332 * 304.18007 * 15 14 11 46 46 H 1.08996 * 109.47219 * 310.00765 * 16 14 11 47 47 H 1.08997 * 109.46584 * 70.00466 * 16 14 11 48 48 H 0.96998 * 119.99472 * 0.02562 * 19 17 16 49 49 H 0.96995 * 119.99579 * 180.02562 * 23 22 20 50 50 H 1.07994 * 120.00370 * 179.72863 * 28 5 4 51 51 H 1.07999 * 120.00296 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 5.7787 0.0000 -0.0028 7 6 6.2821 -0.0005 1.4176 8 8 5.4948 -0.0014 2.3401 9 7 7.6074 -0.0012 1.6628 10 6 8.0968 -0.0023 3.0437 11 6 9.6220 -0.1231 3.0441 12 1 9.9099 -1.0920 2.6362 13 6 10.1432 0.0022 4.4771 14 7 10.1982 0.9465 2.2182 15 6 11.6184 0.6916 1.9423 16 6 10.0122 2.2588 2.8516 17 6 10.3887 3.3449 1.8772 18 8 10.7736 3.0543 0.7641 19 7 10.2977 4.6391 2.2422 20 6 10.6397 5.6271 1.3554 21 1 10.9825 5.3683 0.3644 22 6 10.5454 6.9614 1.7316 23 7 10.1279 7.2762 2.9372 24 14 11.0121 8.3076 0.5236 25 1 9.8164 8.7028 -0.2635 26 1 11.5255 9.4851 1.2687 27 1 12.0654 7.8053 -0.3948 28 6 3.5806 -1.1972 -0.0074 29 6 2.1982 -1.1972 0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 1.6582 2.1324 -0.0005 34 1 4.1205 2.1325 -0.0010 35 1 6.1416 0.8902 -0.5165 36 1 6.1417 -0.8898 -0.5173 37 1 8.2372 -0.0016 0.9251 38 1 7.6654 -0.8466 3.5814 39 1 7.8058 0.9272 3.5331 40 1 9.8554 0.9712 4.8850 41 1 11.2298 -0.0834 4.4773 42 1 9.7157 -0.7913 5.0899 43 1 11.7155 -0.2161 1.3466 44 1 12.0386 1.5337 1.3926 45 1 12.1547 0.5677 2.8831 46 1 8.9684 2.3773 3.1424 47 1 10.6458 2.3284 3.7358 48 1 9.9903 4.8714 3.1323 49 1 10.0618 8.2076 3.1997 50 1 4.1206 -2.1324 -0.0127 51 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755308759.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:05 Heat of formation + Delta-G solvation = -71.297458 kcal Electronic energy + Delta-G solvation = -30225.236588 eV Core-core repulsion = 26123.298118 eV Total energy + Delta-G solvation = -4101.938470 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.13898 -40.54737 -39.78624 -38.65525 -35.97835 -35.22531 -34.68870 -33.26350 -32.15303 -31.79822 -30.58862 -29.53168 -27.63631 -26.76028 -25.94085 -24.97160 -23.61964 -22.05382 -21.82845 -21.06900 -20.44700 -19.70668 -18.18161 -17.95150 -17.47759 -16.93193 -16.65675 -16.59391 -16.41213 -15.99740 -15.87164 -15.81703 -15.44394 -15.35983 -14.97570 -14.68661 -14.39836 -14.29122 -14.09357 -13.91354 -13.76864 -13.62849 -13.47182 -13.24731 -13.01766 -13.00498 -12.80726 -12.72233 -12.65885 -12.46276 -12.39894 -12.17399 -12.12753 -11.98967 -11.80694 -11.76681 -11.43202 -10.92361 -10.25463 -9.98820 -9.97036 -9.79732 -9.38124 -9.17992 -8.45837 -5.94149 0.40722 0.52960 1.37546 1.41039 1.53585 1.70688 2.07141 2.26034 2.31995 2.78028 2.94427 3.21396 3.41486 3.73148 3.78893 3.91116 4.00247 4.09181 4.15421 4.17667 4.23023 4.29377 4.31158 4.37137 4.51263 4.57519 4.59528 4.64296 4.65033 4.65971 4.67403 4.80084 4.84630 4.86999 4.91811 4.99444 5.02330 5.20754 5.24435 5.28586 5.30711 5.41617 5.51036 5.54804 5.69818 5.71650 5.89050 6.07830 6.15297 6.21453 6.61151 6.66979 7.14060 7.33626 7.58105 8.13243 8.71825 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008570 B = 0.002599 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3266.431716 B =10770.478695 C =13194.119496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.100 4.100 3 C -0.134 4.134 4 C -0.124 4.124 5 C -0.084 4.084 6 C -0.099 4.099 7 C 0.511 3.489 8 O -0.584 6.584 9 N -0.709 5.709 10 C 0.130 3.870 11 C 0.074 3.926 12 H 0.112 0.888 13 C -0.183 4.183 14 N -0.521 5.521 15 C 0.026 3.974 16 C 0.057 3.943 17 C 0.444 3.556 18 O -0.608 6.608 19 N -0.578 5.578 20 C -0.328 4.328 21 H 0.081 0.919 22 C -0.016 4.016 23 N -0.924 5.924 24 Si 0.991 3.009 25 H -0.272 1.272 26 H -0.273 1.273 27 H -0.271 1.271 28 C -0.113 4.113 29 C -0.129 4.129 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.131 0.869 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.131 0.869 37 H 0.416 0.584 38 H 0.079 0.921 39 H 0.045 0.955 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.054 0.946 45 H 0.034 0.966 46 H 0.093 0.907 47 H 0.067 0.933 48 H 0.393 0.607 49 H 0.276 0.724 50 H 0.136 0.864 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.804 -19.189 -1.647 22.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.100 4.100 3 C -0.152 4.152 4 C -0.142 4.142 5 C -0.084 4.084 6 C -0.139 4.139 7 C 0.298 3.702 8 O -0.464 6.464 9 N -0.360 5.360 10 C 0.005 3.995 11 C -0.034 4.034 12 H 0.130 0.870 13 C -0.242 4.242 14 N -0.246 5.246 15 C -0.122 4.122 16 C -0.074 4.074 17 C 0.231 3.769 18 O -0.493 6.493 19 N -0.216 5.216 20 C -0.457 4.457 21 H 0.099 0.901 22 C -0.215 4.215 23 N -0.565 5.565 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.197 1.197 27 H -0.195 1.195 28 C -0.131 4.131 29 C -0.147 4.147 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.149 0.851 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.149 0.851 37 H 0.253 0.747 38 H 0.098 0.902 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.072 0.928 45 H 0.053 0.947 46 H 0.111 0.889 47 H 0.085 0.915 48 H 0.226 0.774 49 H 0.086 0.914 50 H 0.153 0.847 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.346 -19.199 -2.092 22.399 hybrid contribution 0.939 1.398 0.609 1.791 sum -10.407 -17.801 -1.483 20.673 Atomic orbital electron populations 1.20818 0.89349 1.03453 1.03119 1.20283 0.97578 0.92986 0.99132 1.21234 0.93937 0.98644 1.01406 1.21193 0.95093 0.97800 1.00155 1.19480 0.94367 0.93840 1.00724 1.20701 0.92611 1.07024 0.93522 1.20938 0.82227 0.75211 0.91803 1.90682 1.56481 1.51657 1.47628 1.45859 1.06598 1.73912 1.09678 1.21394 0.93285 1.01446 0.83335 1.22058 0.92524 0.95751 0.93063 0.87010 1.22378 1.02167 1.03211 0.96446 1.61726 1.17685 0.99924 1.45224 1.22434 0.86941 1.02703 1.00080 1.21703 1.02257 0.88887 0.94534 1.20731 0.82956 0.83739 0.89444 1.90462 1.52280 1.82790 1.23814 1.41971 1.59222 1.04815 1.15545 1.19648 1.42774 0.86333 0.96962 0.90073 1.26043 0.96897 1.00018 0.98574 1.69682 1.47215 1.20116 1.19498 0.84947 0.78610 0.77186 0.77739 1.19795 1.19737 1.19516 1.21226 0.94832 0.97592 0.99422 1.21299 0.94084 0.98404 1.00872 0.90090 0.90542 0.91245 0.85099 0.86719 0.87340 0.85139 0.74721 0.90246 0.93656 0.92688 0.91387 0.89848 0.89815 0.92751 0.94723 0.88912 0.91480 0.77381 0.91441 0.84653 0.83968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 10.01 71.24 0.71 -0.83 16 2 C -0.10 -2.05 5.88 -19.87 -0.12 -2.17 16 3 C -0.13 -3.13 9.70 22.27 0.22 -2.91 16 4 C -0.12 -3.25 9.70 22.27 0.22 -3.03 16 5 C -0.08 -2.06 4.37 -19.87 -0.09 -2.15 16 6 C -0.10 -2.14 5.83 29.10 0.17 -1.97 16 7 C 0.51 14.00 7.82 87.65 0.69 14.69 16 8 O -0.58 -20.72 16.03 -3.03 -0.05 -20.77 16 9 N -0.71 -17.16 5.41 -463.06 -2.51 -19.67 16 10 C 0.13 3.02 4.94 86.38 0.43 3.45 16 11 C 0.07 1.50 2.47 44.92 0.11 1.61 16 12 H 0.11 1.82 8.04 -2.39 -0.02 1.81 16 13 C -0.18 -3.24 8.41 71.98 0.61 -2.64 16 14 N -0.52 -14.51 3.80 -901.61 -3.43 -17.94 16 15 C 0.03 0.72 9.10 127.69 1.16 1.88 16 16 C 0.06 1.92 4.30 85.55 0.37 2.29 16 17 C 0.44 20.51 7.43 87.65 0.65 21.16 16 18 O -0.61 -31.73 13.95 -3.11 -0.04 -31.77 16 19 N -0.58 -29.59 5.29 -306.98 -1.62 -31.21 16 20 C -0.33 -18.47 9.68 84.04 0.81 -17.66 16 21 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 22 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 23 N -0.92 -50.50 13.05 21.67 0.28 -50.21 16 24 Si 0.99 43.06 29.55 68.60 2.03 45.09 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 28 C -0.11 -2.46 9.70 22.27 0.22 -2.24 16 29 C -0.13 -2.57 9.70 22.27 0.22 -2.36 16 30 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 32 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 33 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 34 H 0.11 2.99 8.06 -2.91 -0.02 2.97 16 35 H 0.11 2.26 8.09 -2.39 -0.02 2.24 16 36 H 0.13 1.96 8.08 -2.38 -0.02 1.94 16 37 H 0.42 9.34 8.06 -92.71 -0.75 8.59 16 38 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.05 1.25 6.68 -2.39 -0.02 1.23 16 40 H 0.05 1.10 6.54 -2.39 -0.02 1.09 16 41 H 0.07 1.17 6.73 -2.39 -0.02 1.15 16 42 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.05 1.98 5.79 -2.39 -0.01 1.97 16 45 H 0.03 0.82 6.61 -2.39 -0.02 0.81 16 46 H 0.09 3.04 6.33 -2.39 -0.02 3.03 16 47 H 0.07 2.05 6.83 -2.39 -0.02 2.04 16 48 H 0.39 19.49 7.90 -92.71 -0.73 18.76 16 49 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 50 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 51 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -72.89 415.07 0.97 -71.92 By element: Atomic # 1 Polarization: 48.35 SS G_CDS: -0.53 Total: 47.82 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 6.83 Total: 6.74 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -7.27 Total: -119.03 kcal Atomic # 8 Polarization: -52.45 SS G_CDS: -0.09 Total: -52.54 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -72.89 0.97 -71.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755308759.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.622 kcal (2) G-P(sol) polarization free energy of solvation -72.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds