Wall clock time and date at job start Wed Apr 1 2020 04:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31418 * 119.63598 * 2 1 4 4 C 1.32714 * 121.79870 * 179.97438 * 3 2 1 5 5 C 1.48336 * 119.57513 * 179.72688 * 4 3 2 6 6 O 1.21486 * 120.00269 * 173.82363 * 5 4 3 7 7 N 1.34773 * 119.99567 * 353.82068 * 5 4 3 8 8 C 1.46503 * 120.00005 * 174.66470 * 7 5 4 9 9 C 1.46501 * 120.00364 * 354.66595 * 7 5 4 10 10 C 1.39306 * 120.85753 * 0.02562 * 4 3 2 11 11 C 1.38445 * 119.19040 * 0.02562 * 10 4 3 12 12 C 1.39722 * 119.64240 * 179.97438 * 2 1 3 13 13 C 1.48002 * 120.46223 * 0.03933 * 12 2 1 14 14 O 1.21535 * 120.00220 * 6.41449 * 13 12 2 15 15 N 1.34782 * 119.99948 * 186.41169 * 13 12 2 16 16 C 1.46502 * 119.99834 * 180.02562 * 15 13 12 17 17 C 1.53004 * 109.47001 * 179.97438 * 16 15 13 18 18 C 1.53007 * 109.46648 * 299.99957 * 17 16 15 19 19 C 1.52997 * 109.47003 * 59.99797 * 17 16 15 20 20 C 1.52997 * 109.46886 * 180.02562 * 17 16 15 21 21 C 1.50707 * 109.46677 * 180.02562 * 20 17 16 22 22 H 1.07993 * 120.00003 * 359.97438 * 21 20 17 23 23 C 1.37877 * 119.99763 * 180.02562 * 21 20 17 24 24 N 1.31519 * 120.00192 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 119.99940 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47405 * 59.99515 * 25 23 21 27 27 H 1.48503 * 109.47122 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47143 * 299.99337 * 25 23 21 29 29 H 1.09000 * 109.47390 * 97.57786 * 1 2 3 30 30 H 1.09005 * 109.46758 * 217.57540 * 1 2 3 31 31 H 1.08998 * 109.47330 * 337.57635 * 1 2 3 32 32 H 1.08994 * 109.47043 * 90.00377 * 8 7 5 33 33 H 1.09002 * 109.47136 * 210.00116 * 8 7 5 34 34 H 1.09003 * 109.47231 * 329.99573 * 8 7 5 35 35 H 1.08999 * 109.47424 * 84.04198 * 9 7 5 36 36 H 1.08995 * 109.47367 * 204.04422 * 9 7 5 37 37 H 1.09000 * 109.46965 * 324.04104 * 9 7 5 38 38 H 1.07996 * 120.40571 * 179.97438 * 10 4 3 39 39 H 1.08006 * 120.82355 * 179.97438 * 11 10 4 40 40 H 0.96998 * 119.99715 * 359.97438 * 15 13 12 41 41 H 1.08998 * 109.47088 * 299.99917 * 16 15 13 42 42 H 1.09003 * 109.47120 * 59.99849 * 16 15 13 43 43 H 1.08991 * 109.47369 * 60.00135 * 18 17 16 44 44 H 1.09001 * 109.46329 * 180.02562 * 18 17 16 45 45 H 1.08997 * 109.46978 * 299.99380 * 18 17 16 46 46 H 1.08998 * 109.47085 * 60.00064 * 19 17 16 47 47 H 1.08999 * 109.46917 * 180.02562 * 19 17 16 48 48 H 1.09004 * 109.47469 * 299.99823 * 19 17 16 49 49 H 1.08998 * 109.47089 * 299.99866 * 20 17 16 50 50 H 1.08998 * 109.47093 * 60.00327 * 20 17 16 51 51 H 0.96997 * 120.00041 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1569 1.1423 0.0000 4 6 3.4831 1.1923 0.0005 5 6 4.1660 2.5091 -0.0057 6 8 5.3741 2.5674 0.1079 7 7 3.4461 3.6409 -0.1374 8 6 4.1045 4.9449 -0.0265 9 6 2.0052 3.5672 -0.3913 10 6 4.2422 0.0243 0.0005 11 6 3.5967 -1.2005 -0.0005 12 6 2.1981 -1.2144 0.0005 13 6 1.4604 -2.4975 0.0002 14 8 0.2508 -2.5030 -0.1181 15 7 2.1300 -3.6598 0.1311 16 6 1.3999 -4.9299 0.1302 17 6 2.3884 -6.0865 0.2915 18 6 3.3856 -6.0706 -0.8689 19 6 3.1422 -5.9325 1.6140 20 6 1.6259 -7.4130 0.2900 21 6 2.5996 -8.5522 0.4495 22 1 3.6564 -8.3503 0.5422 23 6 2.1411 -9.8522 0.4760 24 7 0.8541 -10.0981 0.3625 25 14 3.3478 -11.2642 0.6744 26 1 4.0776 -11.1149 1.9590 27 1 2.6078 -12.5517 0.6728 28 1 4.3173 -11.2487 -0.4505 29 1 -0.3634 -0.1355 -1.0187 30 1 -0.3633 -0.8145 0.6267 31 1 -0.3634 0.9499 0.3920 32 1 4.4464 5.2641 -1.0110 33 1 3.3987 5.6760 0.3677 34 1 4.9584 4.8648 0.6464 35 1 1.4753 3.4465 0.5535 36 1 1.6747 4.4844 -0.8786 37 1 1.7933 2.7157 -1.0380 38 1 5.3210 0.0736 0.0005 39 1 4.1592 -2.1225 -0.0010 40 1 3.0954 -3.6554 0.2251 41 1 0.6892 -4.9410 0.9566 42 1 0.8632 -5.0398 -0.8121 43 1 3.9287 -5.1257 -0.8682 44 1 4.0895 -6.8949 -0.7541 45 1 2.8485 -6.1805 -1.8109 46 1 2.4318 -5.9437 2.4406 47 1 3.8468 -6.7562 1.7286 48 1 3.6855 -4.9875 1.6146 49 1 0.9152 -7.4245 1.1163 50 1 1.0892 -7.5224 -0.6524 51 1 0.5316 -11.0127 0.3815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345908414.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:11 Heat of formation + Delta-G solvation = -29.922699 kcal Electronic energy + Delta-G solvation = -30392.987411 eV Core-core repulsion = 26292.843086 eV Total energy + Delta-G solvation = -4100.144326 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.39345 -40.04053 -38.90344 -37.20465 -36.04577 -34.22226 -33.07754 -32.93096 -32.02888 -28.61592 -28.27615 -27.30062 -27.03255 -26.59802 -26.12468 -24.70045 -23.03286 -22.44881 -20.87877 -20.24447 -18.78689 -17.88899 -17.53017 -16.93637 -16.39228 -16.32686 -16.10602 -15.57870 -15.40885 -14.85065 -14.63237 -14.52352 -14.47677 -13.78387 -13.67471 -13.66740 -13.42350 -13.23381 -13.08341 -12.90734 -12.85323 -12.77773 -12.50974 -12.36546 -12.17418 -12.11290 -12.04982 -11.24339 -11.06039 -10.91629 -10.71182 -10.69455 -10.48684 -10.32962 -10.31829 -10.05657 -9.95289 -9.60187 -9.45663 -9.22936 -9.05733 -8.99477 -8.84752 -8.39825 -6.04034 -4.05702 -0.05960 0.76545 2.10516 2.51701 2.89650 3.11218 3.29255 3.35016 3.36179 3.49994 3.59746 4.15319 4.27859 4.39595 4.42134 4.60622 4.73451 4.84458 4.93739 5.01970 5.21009 5.31258 5.33910 5.36781 5.40437 5.41122 5.51301 5.52796 5.58752 5.65038 5.68274 5.72120 5.91459 6.06694 6.07060 6.12340 6.16025 6.26856 6.29237 6.43915 6.55140 6.64430 6.83652 6.97501 6.99869 7.04187 7.25348 7.51333 7.58368 7.69445 7.69859 7.93889 8.15998 8.35517 8.98653 9.57663 11.07225 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025279 B = 0.001937 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.352893 B =14450.266556 C =15338.405670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.181 3.819 3 N -0.459 5.459 4 C 0.099 3.901 5 C 0.569 3.431 6 O -0.531 6.531 7 N -0.603 5.603 8 C 0.084 3.916 9 C 0.087 3.913 10 C -0.124 4.124 11 C -0.045 4.045 12 C -0.159 4.159 13 C 0.553 3.447 14 O -0.527 6.527 15 N -0.712 5.712 16 C 0.128 3.872 17 C -0.074 4.074 18 C -0.128 4.128 19 C -0.128 4.128 20 C 0.037 3.963 21 C -0.513 4.513 22 H 0.059 0.941 23 C 0.057 3.943 24 N -0.894 5.894 25 Si 0.890 3.110 26 H -0.278 1.278 27 H -0.288 1.288 28 H -0.278 1.278 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.094 0.906 38 H 0.154 0.846 39 H 0.148 0.852 40 H 0.397 0.603 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.027 0.973 44 H 0.068 0.932 45 H 0.049 0.951 46 H 0.049 0.951 47 H 0.068 0.932 48 H 0.027 0.973 49 H 0.019 0.981 50 H 0.019 0.981 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.574 27.235 -1.246 27.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.041 3.959 3 N -0.172 5.172 4 C -0.039 4.039 5 C 0.355 3.645 6 O -0.407 6.407 7 N -0.335 5.335 8 C -0.058 4.058 9 C -0.055 4.055 10 C -0.145 4.145 11 C -0.071 4.071 12 C -0.165 4.165 13 C 0.338 3.662 14 O -0.405 6.405 15 N -0.363 5.363 16 C 0.005 3.995 17 C -0.074 4.074 18 C -0.185 4.185 19 C -0.185 4.185 20 C 0.000 4.000 21 C -0.552 4.552 22 H 0.077 0.923 23 C -0.145 4.145 24 N -0.533 5.533 25 Si 0.718 3.282 26 H -0.203 1.203 27 H -0.214 1.214 28 H -0.203 1.203 29 H 0.104 0.896 30 H 0.124 0.876 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.112 0.888 38 H 0.172 0.828 39 H 0.165 0.835 40 H 0.234 0.766 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.046 0.954 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.087 0.913 48 H 0.046 0.954 49 H 0.037 0.963 50 H 0.037 0.963 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.761 27.910 -1.273 28.075 hybrid contribution 1.573 -1.660 0.131 2.290 sum 4.334 26.250 -1.142 26.630 Atomic orbital electron populations 1.21057 0.86737 1.03970 1.04642 1.21623 0.97866 0.86214 0.90213 1.68031 1.08173 1.28311 1.12673 1.21208 0.89973 0.94012 0.98745 1.17967 0.86140 0.83246 0.77141 1.90786 1.13178 1.86596 1.50140 1.47616 1.10220 1.05760 1.69943 1.21725 0.98620 0.83184 1.02271 1.22185 0.78247 1.02604 1.02463 1.21998 1.02442 0.91177 0.98871 1.21851 0.93209 0.98857 0.93205 1.21141 0.94387 0.95704 1.05239 1.17973 0.87181 0.83318 0.77694 1.90746 1.13314 1.86937 1.49520 1.46162 1.11193 1.06290 1.72676 1.21723 0.94873 0.80714 1.02156 1.20933 0.95328 0.96061 0.95076 1.21776 0.99117 0.99747 0.97888 1.21775 1.00217 0.99663 0.96876 1.19081 0.95013 0.88405 0.97547 1.21130 0.93445 0.90710 1.49872 0.92309 1.25012 0.95005 0.98950 0.95504 1.69949 1.12803 1.20178 1.50354 0.86702 0.81171 0.81755 0.78611 1.20328 1.21387 1.20326 0.89607 0.87648 0.91184 0.92391 0.90832 0.90477 0.91883 0.92127 0.88800 0.82837 0.83487 0.76626 0.91370 0.91374 0.95409 0.91272 0.93230 0.93231 0.91284 0.95385 0.96284 0.96282 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 8.82 36.01 0.32 -0.75 16 2 C 0.18 1.98 6.82 -82.21 -0.56 1.42 16 3 N -0.46 -4.76 6.04 -5.75 -0.03 -4.79 16 4 C 0.10 1.07 6.58 -82.93 -0.55 0.52 16 5 C 0.57 6.41 7.65 -12.11 -0.09 6.32 16 6 O -0.53 -7.24 15.96 5.38 0.09 -7.15 16 7 N -0.60 -5.32 3.27 -190.46 -0.62 -5.94 16 8 C 0.08 0.54 10.37 59.85 0.62 1.17 16 9 C 0.09 0.60 9.10 59.85 0.54 1.15 16 10 C -0.12 -1.21 9.62 -39.11 -0.38 -1.59 16 11 C -0.04 -0.42 9.63 -38.89 -0.37 -0.79 16 12 C -0.16 -1.80 5.90 -104.73 -0.62 -2.41 16 13 C 0.55 7.46 7.71 -12.26 -0.09 7.36 16 14 O -0.53 -8.44 13.39 5.33 0.07 -8.37 16 15 N -0.71 -9.33 4.91 -61.19 -0.30 -9.63 16 16 C 0.13 2.07 4.56 -4.04 -0.02 2.05 16 17 C -0.07 -1.31 0.54 -154.51 -0.08 -1.39 16 18 C -0.13 -2.10 8.05 37.16 0.30 -1.80 16 19 C -0.13 -2.11 8.05 37.16 0.30 -1.81 16 20 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 21 C -0.51 -13.22 7.65 -34.44 -0.26 -13.49 16 22 H 0.06 1.45 5.68 -52.49 -0.30 1.15 16 23 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 24 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 25 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.11 1.23 5.93 -51.93 -0.31 0.93 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.30 8.07 -51.93 -0.42 -0.12 16 34 H 0.08 0.57 7.50 -51.93 -0.39 0.18 16 35 H 0.06 0.44 7.98 -51.93 -0.41 0.02 16 36 H 0.06 0.29 8.03 -51.93 -0.42 -0.13 16 37 H 0.09 0.75 5.80 -51.93 -0.30 0.45 16 38 H 0.15 1.34 7.64 -52.49 -0.40 0.94 16 39 H 0.15 1.03 6.56 -52.48 -0.34 0.69 16 40 H 0.40 4.36 4.31 -40.82 -0.18 4.18 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.03 0.36 6.86 -51.93 -0.36 0.00 16 44 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 45 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 48 H 0.03 0.37 6.86 -51.93 -0.36 0.01 16 49 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 404.29 15.07 6.09 6.09 Total: -1.00 -31.45 404.29 -7.96 -39.40 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.81 Total: 1.55 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -1.15 Total: -1.85 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -0.22 Total: -45.47 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.16 Total: -15.52 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.45 -7.96 -39.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345908414.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.482 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds