Wall clock time and date at job start Wed Apr 1 2020 04:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31418 * 119.63598 * 2 1 4 4 C 1.32714 * 121.79870 * 179.97438 * 3 2 1 5 5 C 1.48336 * 119.57513 * 179.72688 * 4 3 2 6 6 O 1.21486 * 120.00269 * 173.82363 * 5 4 3 7 7 N 1.34773 * 119.99567 * 353.82068 * 5 4 3 8 8 C 1.46503 * 120.00005 * 174.66470 * 7 5 4 9 9 C 1.46501 * 120.00364 * 354.66595 * 7 5 4 10 10 C 1.39306 * 120.85753 * 0.02562 * 4 3 2 11 11 C 1.38445 * 119.19040 * 0.02562 * 10 4 3 12 12 C 1.39722 * 119.64240 * 179.97438 * 2 1 3 13 13 C 1.48002 * 120.46223 * 0.03933 * 12 2 1 14 14 O 1.21535 * 120.00220 * 6.41449 * 13 12 2 15 15 N 1.34782 * 119.99948 * 186.41169 * 13 12 2 16 16 C 1.46502 * 119.99834 * 180.02562 * 15 13 12 17 17 C 1.53004 * 109.47001 * 179.97438 * 16 15 13 18 18 C 1.53007 * 109.46648 * 299.99957 * 17 16 15 19 19 C 1.52997 * 109.47003 * 59.99797 * 17 16 15 20 20 C 1.52997 * 109.46886 * 180.02562 * 17 16 15 21 21 C 1.50707 * 109.46677 * 180.02562 * 20 17 16 22 22 H 1.07993 * 120.00003 * 359.97438 * 21 20 17 23 23 C 1.37877 * 119.99763 * 180.02562 * 21 20 17 24 24 N 1.31519 * 120.00192 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 119.99940 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47405 * 59.99515 * 25 23 21 27 27 H 1.48503 * 109.47122 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47143 * 299.99337 * 25 23 21 29 29 H 1.09000 * 109.47390 * 97.57786 * 1 2 3 30 30 H 1.09005 * 109.46758 * 217.57540 * 1 2 3 31 31 H 1.08998 * 109.47330 * 337.57635 * 1 2 3 32 32 H 1.08994 * 109.47043 * 90.00377 * 8 7 5 33 33 H 1.09002 * 109.47136 * 210.00116 * 8 7 5 34 34 H 1.09003 * 109.47231 * 329.99573 * 8 7 5 35 35 H 1.08999 * 109.47424 * 84.04198 * 9 7 5 36 36 H 1.08995 * 109.47367 * 204.04422 * 9 7 5 37 37 H 1.09000 * 109.46965 * 324.04104 * 9 7 5 38 38 H 1.07996 * 120.40571 * 179.97438 * 10 4 3 39 39 H 1.08006 * 120.82355 * 179.97438 * 11 10 4 40 40 H 0.96998 * 119.99715 * 359.97438 * 15 13 12 41 41 H 1.08998 * 109.47088 * 299.99917 * 16 15 13 42 42 H 1.09003 * 109.47120 * 59.99849 * 16 15 13 43 43 H 1.08991 * 109.47369 * 60.00135 * 18 17 16 44 44 H 1.09001 * 109.46329 * 180.02562 * 18 17 16 45 45 H 1.08997 * 109.46978 * 299.99380 * 18 17 16 46 46 H 1.08998 * 109.47085 * 60.00064 * 19 17 16 47 47 H 1.08999 * 109.46917 * 180.02562 * 19 17 16 48 48 H 1.09004 * 109.47469 * 299.99823 * 19 17 16 49 49 H 1.08998 * 109.47089 * 299.99866 * 20 17 16 50 50 H 1.08998 * 109.47093 * 60.00327 * 20 17 16 51 51 H 0.96997 * 120.00041 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1569 1.1423 0.0000 4 6 3.4831 1.1923 0.0005 5 6 4.1660 2.5091 -0.0057 6 8 5.3741 2.5674 0.1079 7 7 3.4461 3.6409 -0.1374 8 6 4.1045 4.9449 -0.0265 9 6 2.0052 3.5672 -0.3913 10 6 4.2422 0.0243 0.0005 11 6 3.5967 -1.2005 -0.0005 12 6 2.1981 -1.2144 0.0005 13 6 1.4604 -2.4975 0.0002 14 8 0.2508 -2.5030 -0.1181 15 7 2.1300 -3.6598 0.1311 16 6 1.3999 -4.9299 0.1302 17 6 2.3884 -6.0865 0.2915 18 6 3.3856 -6.0706 -0.8689 19 6 3.1422 -5.9325 1.6140 20 6 1.6259 -7.4130 0.2900 21 6 2.5996 -8.5522 0.4495 22 1 3.6564 -8.3503 0.5422 23 6 2.1411 -9.8522 0.4760 24 7 0.8541 -10.0981 0.3625 25 14 3.3478 -11.2642 0.6744 26 1 4.0776 -11.1149 1.9590 27 1 2.6078 -12.5517 0.6728 28 1 4.3173 -11.2487 -0.4505 29 1 -0.3634 -0.1355 -1.0187 30 1 -0.3633 -0.8145 0.6267 31 1 -0.3634 0.9499 0.3920 32 1 4.4464 5.2641 -1.0110 33 1 3.3987 5.6760 0.3677 34 1 4.9584 4.8648 0.6464 35 1 1.4753 3.4465 0.5535 36 1 1.6747 4.4844 -0.8786 37 1 1.7933 2.7157 -1.0380 38 1 5.3210 0.0736 0.0005 39 1 4.1592 -2.1225 -0.0010 40 1 3.0954 -3.6554 0.2251 41 1 0.6892 -4.9410 0.9566 42 1 0.8632 -5.0398 -0.8121 43 1 3.9287 -5.1257 -0.8682 44 1 4.0895 -6.8949 -0.7541 45 1 2.8485 -6.1805 -1.8109 46 1 2.4318 -5.9437 2.4406 47 1 3.8468 -6.7562 1.7286 48 1 3.6855 -4.9875 1.6146 49 1 0.9152 -7.4245 1.1163 50 1 1.0892 -7.5224 -0.6524 51 1 0.5316 -11.0127 0.3815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345908414.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:10 Heat of formation + Delta-G solvation = -48.842193 kcal Electronic energy + Delta-G solvation = -30393.807822 eV Core-core repulsion = 26292.843086 eV Total energy + Delta-G solvation = -4100.964736 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.23464 -41.00814 -39.87704 -38.59336 -36.77983 -35.49808 -34.39986 -33.83661 -33.45136 -29.38782 -29.20247 -28.80914 -27.98989 -27.94806 -27.23899 -25.62647 -24.69765 -23.29654 -21.96363 -21.05756 -20.09959 -18.75733 -18.58825 -18.32313 -17.76637 -17.13430 -17.02584 -16.64782 -16.53711 -16.29037 -15.76614 -15.54930 -15.41209 -14.90222 -14.86780 -14.61094 -14.41656 -14.28947 -14.22087 -13.94018 -13.89041 -13.76377 -13.44739 -13.39390 -13.22639 -13.01793 -12.82724 -12.74442 -12.72751 -12.57074 -12.31042 -12.21295 -11.99645 -11.56365 -11.52092 -11.17262 -11.08389 -10.92007 -10.85462 -10.48891 -10.36546 -10.35227 -10.01073 -9.70889 -8.12532 -6.19857 -0.90134 0.00552 1.23444 1.43829 1.45180 1.52338 1.83816 1.93566 2.03196 2.45668 2.65295 2.80958 3.22029 3.39874 3.51357 3.54293 3.81351 3.90817 4.04091 4.10268 4.23651 4.33644 4.41917 4.46463 4.53466 4.62277 4.69316 4.72306 4.74067 4.79651 4.81657 4.86976 4.89511 4.96619 4.97489 5.04879 5.11111 5.14274 5.20091 5.34756 5.43499 5.47540 5.52644 5.53239 5.55646 5.58909 5.82484 5.91865 6.12437 6.31532 6.41802 6.51511 6.91270 6.95308 7.11263 7.47720 8.99432 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025279 B = 0.001937 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.352893 B =14450.266556 C =15338.405670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.174 3.826 3 N -0.453 5.453 4 C 0.090 3.910 5 C 0.560 3.440 6 O -0.563 6.563 7 N -0.600 5.600 8 C 0.080 3.920 9 C 0.087 3.913 10 C -0.124 4.124 11 C -0.031 4.031 12 C -0.170 4.170 13 C 0.556 3.444 14 O -0.556 6.556 15 N -0.701 5.701 16 C 0.142 3.858 17 C -0.066 4.066 18 C -0.124 4.124 19 C -0.124 4.124 20 C 0.040 3.960 21 C -0.514 4.514 22 H 0.072 0.928 23 C -0.005 4.005 24 N -0.937 5.937 25 Si 0.956 3.044 26 H -0.268 1.268 27 H -0.292 1.292 28 H -0.267 1.267 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.165 0.835 39 H 0.176 0.824 40 H 0.411 0.589 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.055 0.945 48 H 0.070 0.930 49 H -0.013 1.013 50 H -0.012 1.012 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.695 29.146 -1.234 29.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.033 3.967 3 N -0.166 5.166 4 C -0.048 4.048 5 C 0.347 3.653 6 O -0.442 6.442 7 N -0.331 5.331 8 C -0.062 4.062 9 C -0.055 4.055 10 C -0.145 4.145 11 C -0.057 4.057 12 C -0.176 4.176 13 C 0.343 3.657 14 O -0.436 6.436 15 N -0.354 5.354 16 C 0.019 3.981 17 C -0.066 4.066 18 C -0.181 4.181 19 C -0.181 4.181 20 C 0.003 3.997 21 C -0.552 4.552 22 H 0.090 0.910 23 C -0.202 4.202 24 N -0.578 5.578 25 Si 0.782 3.218 26 H -0.193 1.193 27 H -0.218 1.218 28 H -0.192 1.192 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.183 0.817 39 H 0.193 0.807 40 H 0.250 0.750 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.074 0.926 48 H 0.088 0.912 49 H 0.006 0.994 50 H 0.006 0.994 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.897 29.864 -1.261 30.289 hybrid contribution 0.859 -2.124 0.113 2.294 sum 5.757 27.740 -1.148 28.354 Atomic orbital electron populations 1.20967 0.86447 1.04168 1.04249 1.21764 0.98251 0.86404 0.90231 1.68088 1.08037 1.27809 1.12686 1.21384 0.90251 0.94429 0.98777 1.18130 0.85944 0.84007 0.77238 1.90763 1.14343 1.87059 1.52047 1.47821 1.10955 1.05967 1.68351 1.21903 0.98954 0.82648 1.02674 1.22254 0.77107 1.03593 1.02532 1.22166 1.03023 0.90920 0.98364 1.22095 0.92293 0.99860 0.91452 1.20965 0.95177 0.94388 1.07048 1.18257 0.86892 0.83882 0.76703 1.90747 1.14807 1.87390 1.50681 1.45887 1.11648 1.05051 1.72800 1.21286 0.94314 0.81717 1.00824 1.20723 0.95464 0.93434 0.96990 1.21722 0.98420 1.01560 0.96425 1.21719 0.99722 1.01383 0.95294 1.18962 0.94559 0.91692 0.94526 1.21572 0.94364 0.91217 1.48026 0.90975 1.25925 0.96585 1.02030 0.95659 1.70107 1.14913 1.20490 1.52292 0.85630 0.78937 0.78129 0.79108 1.19258 1.21849 1.19222 0.89731 0.89496 0.89396 0.91579 0.88029 0.91718 0.91770 0.89454 0.89842 0.81712 0.80668 0.75009 0.92881 0.92850 0.91071 0.92625 0.94266 0.94313 0.92618 0.91153 0.99432 0.99396 0.93237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.95 8.82 71.24 0.63 -1.33 16 2 C 0.17 3.56 6.82 42.98 0.29 3.86 16 3 N -0.45 -8.68 6.04 -172.12 -1.04 -9.72 16 4 C 0.09 1.79 6.58 41.96 0.28 2.07 16 5 C 0.56 11.93 7.65 86.93 0.66 12.60 16 6 O -0.56 -14.90 15.96 -3.67 -0.06 -14.96 16 7 N -0.60 -9.51 3.27 -874.80 -2.86 -12.38 16 8 C 0.08 0.87 10.37 127.77 1.32 2.20 16 9 C 0.09 1.01 9.10 127.77 1.16 2.17 16 10 C -0.12 -2.12 9.62 22.58 0.22 -1.91 16 11 C -0.03 -0.49 9.63 22.72 0.22 -0.27 16 12 C -0.17 -3.52 5.90 -19.93 -0.12 -3.63 16 13 C 0.56 14.29 7.71 86.83 0.67 14.96 16 14 O -0.56 -17.81 13.39 -3.83 -0.05 -17.86 16 15 N -0.70 -16.99 4.91 -465.80 -2.29 -19.28 16 16 C 0.14 4.59 4.56 86.38 0.39 4.98 16 17 C -0.07 -2.30 0.54 -52.18 -0.03 -2.33 16 18 C -0.12 -3.84 8.05 71.98 0.58 -3.26 16 19 C -0.12 -3.86 8.05 71.98 0.58 -3.28 16 20 C 0.04 1.96 4.04 29.85 0.12 2.08 16 21 C -0.51 -26.72 7.65 25.60 0.20 -26.52 16 22 H 0.07 3.50 5.68 -2.91 -0.02 3.48 16 23 C -0.01 -0.28 5.46 84.65 0.46 0.19 16 24 N -0.94 -55.94 13.29 21.45 0.28 -55.66 16 25 Si 0.96 42.85 29.54 68.60 2.03 44.87 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 28 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 29 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.09 2.04 5.93 -2.38 -0.01 2.03 16 31 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.62 16 33 H 0.10 0.53 8.07 -2.39 -0.02 0.51 16 34 H 0.06 0.89 7.50 -2.39 -0.02 0.88 16 35 H 0.06 0.75 7.98 -2.39 -0.02 0.73 16 36 H 0.09 0.56 8.03 -2.39 -0.02 0.54 16 37 H 0.08 1.19 5.80 -2.39 -0.01 1.17 16 38 H 0.17 2.47 7.64 -2.91 -0.02 2.44 16 39 H 0.18 1.65 6.56 -2.91 -0.02 1.63 16 40 H 0.41 7.46 4.31 -92.71 -0.40 7.06 16 41 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.07 1.57 6.86 -2.39 -0.02 1.56 16 44 H 0.05 1.88 6.62 -2.39 -0.02 1.86 16 45 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.05 1.89 6.62 -2.39 -0.02 1.88 16 48 H 0.07 1.59 6.86 -2.38 -0.02 1.57 16 49 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 50 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 51 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -70.92 404.29 4.20 -66.72 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.55 Total: 15.69 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 7.64 Total: 2.57 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -5.91 Total: -97.03 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -0.11 Total: -32.82 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -70.92 4.20 -66.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345908414.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.877 kcal (2) G-P(sol) polarization free energy of solvation -70.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds