Wall clock time and date at job start Wed Apr 1 2020 06:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38672 * 120.42152 * 2 1 4 4 C 1.38627 * 118.42362 * 180.02562 * 3 2 1 5 5 C 1.38230 * 119.16134 * 359.97438 * 4 3 2 6 6 N 1.31858 * 120.76033 * 359.72987 * 5 4 3 7 7 C 1.31884 * 121.72720 * 0.55970 * 6 5 4 8 8 C 1.50698 * 119.61716 * 179.71196 * 7 6 5 9 9 H 1.08998 * 109.47075 * 164.73104 * 8 7 6 10 10 N 1.46498 * 109.47187 * 44.73217 * 8 7 6 11 11 C 1.34778 * 120.00411 * 155.00322 * 10 8 7 12 12 O 1.21588 * 119.99371 * 359.97438 * 11 10 8 13 13 N 1.34769 * 120.00291 * 179.97438 * 11 10 8 14 14 C 1.47426 * 125.64968 * 359.95450 * 13 11 10 15 15 C 1.55118 * 104.94495 * 204.03960 * 14 13 11 16 16 C 1.55154 * 101.48474 * 323.22202 * 15 14 13 17 17 O 1.42896 * 110.72198 * 276.82816 * 16 15 14 18 18 C 1.50702 * 110.71956 * 153.73211 * 16 15 14 19 19 H 1.08002 * 120.00299 * 2.44550 * 18 16 15 20 20 C 1.37884 * 119.99942 * 182.16109 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 C 1.47019 * 125.65076 * 179.97438 * 13 11 10 27 27 C 1.52998 * 109.47008 * 284.72948 * 8 7 6 28 28 C 1.52994 * 109.47473 * 299.99921 * 27 8 7 29 29 C 1.53001 * 109.47318 * 60.00133 * 27 8 7 30 30 H 1.09004 * 109.47949 * 269.98089 * 1 2 3 31 31 H 1.08999 * 109.47338 * 29.98634 * 1 2 3 32 32 H 1.09003 * 109.47100 * 149.97880 * 1 2 3 33 33 H 1.08001 * 120.78412 * 359.97438 * 3 2 1 34 34 H 1.07997 * 120.41830 * 180.02562 * 4 3 2 35 35 H 1.08002 * 119.61614 * 180.02562 * 5 4 3 36 36 H 0.96999 * 119.99929 * 334.99636 * 10 8 7 37 37 H 1.09001 * 110.36602 * 323.00573 * 14 13 11 38 38 H 1.09000 * 110.36894 * 85.32760 * 14 13 11 39 39 H 1.09005 * 111.16464 * 205.12953 * 15 14 13 40 40 H 1.08998 * 110.93689 * 81.21185 * 15 14 13 41 41 H 0.96700 * 114.00666 * 177.55588 * 17 16 15 42 42 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 43 43 H 1.08999 * 109.88427 * 59.48270 * 26 13 11 44 44 H 1.09008 * 110.01210 * 298.39333 * 26 13 11 45 45 H 1.09003 * 109.46866 * 179.97438 * 27 8 7 46 46 H 1.09003 * 109.47205 * 60.00048 * 28 27 8 47 47 H 1.08994 * 109.47720 * 180.02562 * 28 27 8 48 48 H 1.09007 * 109.47225 * 300.00431 * 28 27 8 49 49 H 1.09003 * 109.47075 * 59.99541 * 29 27 8 50 50 H 1.09001 * 109.47172 * 179.97438 * 29 27 8 51 51 H 1.08995 * 109.46864 * 300.00270 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5945 1.1475 -0.0005 5 6 4.2256 -0.0824 -0.0005 6 7 3.5254 -1.1996 0.0053 7 6 2.2066 -1.1917 0.0004 8 6 1.4539 -2.4972 0.0009 9 1 0.4126 -2.3161 0.2672 10 7 2.0564 -3.4079 0.9776 11 6 1.3174 -4.3921 1.5267 12 8 0.1504 -4.5239 1.2119 13 7 1.8718 -5.2302 2.4248 14 6 3.2687 -5.1851 2.8939 15 6 3.5746 -6.6263 3.3791 16 6 2.2176 -7.0339 4.0114 17 8 2.1168 -6.5453 5.3505 18 6 2.0415 -8.5302 3.9772 19 1 2.8283 -9.1578 3.5855 20 6 0.8781 -9.0984 4.4514 21 7 -0.0800 -8.3342 4.9284 22 14 0.6629 -10.9536 4.4161 23 1 1.8770 -11.5818 3.8360 24 1 0.4595 -11.4548 5.7992 25 1 -0.5187 -11.2992 3.5856 26 6 1.1840 -6.3412 3.0986 27 6 1.5221 -3.1257 -1.3923 28 6 0.8928 -2.1747 -2.4123 29 6 2.9838 -3.3799 -1.7662 30 1 -0.3635 -0.0003 1.0276 31 1 -0.3634 0.8901 -0.5136 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6889 2.1423 -0.0004 34 1 4.1735 2.0592 -0.0001 35 1 5.3046 -0.1286 -0.0005 36 1 2.9873 -3.3026 1.2289 37 1 3.9348 -4.9096 2.0762 38 1 3.3690 -4.4807 3.7197 39 1 4.3699 -6.6302 4.1245 40 1 3.8249 -7.2750 2.5396 41 1 1.2718 -6.7410 5.7780 42 1 -0.8986 -8.7339 5.2617 43 1 0.8098 -7.0488 2.3588 44 1 0.3571 -5.9596 3.6976 45 1 0.9780 -4.0703 -1.3918 46 1 1.4372 -1.2304 -2.4127 47 1 0.9410 -2.6226 -3.4047 48 1 -0.1486 -1.9936 -2.1459 49 1 3.4321 -4.0575 -1.0395 50 1 3.0323 -3.8281 -2.7586 51 1 3.5282 -2.4357 -1.7665 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591959775.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:43 Heat of formation + Delta-G solvation = -45.115873 kcal Electronic energy + Delta-G solvation = -32066.200402 eV Core-core repulsion = 27965.397251 eV Total energy + Delta-G solvation = -4100.803151 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.03649 -39.50775 -37.64788 -36.33226 -34.21780 -33.94368 -32.87926 -32.15333 -31.86222 -29.89657 -27.93918 -27.61329 -27.12698 -26.33997 -24.72147 -23.01658 -22.46339 -22.28057 -20.08019 -19.51765 -19.16322 -17.84253 -17.09178 -16.81857 -16.55604 -15.90456 -15.30076 -15.27468 -14.94250 -14.78395 -14.42992 -14.17120 -13.93955 -13.79124 -13.39435 -13.11296 -13.08530 -12.96761 -12.84149 -12.78428 -12.69251 -12.34326 -12.08787 -11.98902 -11.71319 -11.57357 -11.44249 -11.19120 -11.03358 -10.88408 -10.75588 -10.62933 -10.59549 -10.44233 -10.12604 -9.94067 -9.63891 -9.51567 -9.28503 -9.03739 -8.68824 -8.64144 -8.26753 -7.69424 -6.25116 -4.33188 0.83625 1.03739 3.14222 3.23469 3.31608 3.35211 3.56133 3.78464 4.02742 4.29499 4.40982 4.51845 4.56598 4.72952 4.78288 4.92436 5.02807 5.03147 5.14368 5.17737 5.35888 5.36636 5.39954 5.45327 5.57086 5.64920 5.76439 5.76574 5.78845 5.84314 5.89314 5.94553 5.98921 6.02930 6.09138 6.12233 6.17230 6.31114 6.41682 6.55341 6.56319 6.78222 6.84752 6.93960 7.05460 7.31814 7.37948 7.73115 7.77458 7.77682 8.07464 8.60163 8.71159 9.19515 9.34788 9.44518 10.82740 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018266 B = 0.002712 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.504616 B =10323.385198 C =10649.215193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C -0.078 4.078 4 C -0.172 4.172 5 C 0.092 3.908 6 N -0.467 5.467 7 C 0.130 3.870 8 C 0.219 3.781 9 H 0.103 0.897 10 N -0.738 5.738 11 C 0.716 3.284 12 O -0.599 6.599 13 N -0.628 5.628 14 C 0.103 3.897 15 C -0.115 4.115 16 C 0.248 3.752 17 O -0.586 6.586 18 C -0.535 4.535 19 H 0.067 0.933 20 C 0.070 3.930 21 N -0.894 5.894 22 Si 0.903 3.097 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.123 3.877 27 C -0.105 4.105 28 C -0.145 4.145 29 C -0.141 4.141 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.156 0.844 36 H 0.400 0.600 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.384 0.616 42 H 0.269 0.731 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.085 0.915 46 H 0.050 0.950 47 H 0.057 0.943 48 H 0.057 0.943 49 H 0.057 0.943 50 H 0.045 0.955 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.895 19.100 -11.739 23.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.123 4.123 3 C -0.104 4.104 4 C -0.192 4.192 5 C -0.065 4.065 6 N -0.176 5.176 7 C -0.008 4.008 8 C 0.113 3.887 9 H 0.121 0.879 10 N -0.394 5.394 11 C 0.419 3.581 12 O -0.478 6.478 13 N -0.365 5.365 14 C -0.020 4.020 15 C -0.153 4.153 16 C 0.207 3.793 17 O -0.395 6.395 18 C -0.574 4.574 19 H 0.085 0.915 20 C -0.133 4.133 21 N -0.533 5.533 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C 0.001 3.999 27 C -0.125 4.125 28 C -0.203 4.203 29 C -0.198 4.198 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.173 0.827 36 H 0.235 0.765 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.235 0.765 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.103 0.897 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.076 0.924 50 H 0.064 0.936 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.856 18.426 -12.029 22.770 hybrid contribution -0.669 -0.160 0.231 0.725 sum 5.187 18.266 -11.798 22.355 Atomic orbital electron populations 1.20958 0.90131 1.03581 1.03303 1.20678 0.97703 0.93282 1.00678 1.21457 0.94183 0.97920 0.96804 1.22120 0.95234 0.99648 1.02158 1.22748 1.00300 0.87620 0.95830 1.67454 1.07469 1.31358 1.11278 1.21137 0.89883 0.94351 0.95475 1.19674 0.96505 0.83671 0.88898 0.87896 1.45057 1.14860 1.33121 1.46402 1.15495 0.84415 0.79246 0.78993 1.90868 1.15494 1.74973 1.66483 1.47905 1.12603 1.32880 1.43121 1.22255 0.82715 0.99355 0.97668 1.22754 0.99121 0.93490 0.99955 1.19505 0.88416 0.91500 0.79879 1.86086 1.42939 1.81711 1.28781 1.21554 1.02353 0.91171 1.42302 0.91510 1.25078 0.95305 0.99054 0.93893 1.69658 1.06935 1.35492 1.41259 0.86352 0.78238 0.84507 0.77818 1.19611 1.20786 1.20780 1.22850 0.96541 0.85181 0.95342 1.21507 0.97926 0.99809 0.93273 1.21865 1.00495 0.99082 0.98844 1.21813 0.95356 1.02261 1.00357 0.90433 0.91112 0.90223 0.84862 0.84916 0.82722 0.76463 0.92535 0.92201 0.90625 0.90565 0.76521 0.92059 0.91848 0.92016 0.89713 0.93045 0.92399 0.92374 0.92436 0.93575 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 9.23 36.00 0.33 -0.73 16 2 C -0.12 -1.22 5.34 -104.48 -0.56 -1.77 16 3 C -0.08 -0.64 9.86 -39.28 -0.39 -1.02 16 4 C -0.17 -1.32 10.11 -39.44 -0.40 -1.72 16 5 C 0.09 0.83 11.18 -17.54 -0.20 0.64 16 6 N -0.47 -5.39 7.31 -9.47 -0.07 -5.46 16 7 C 0.13 1.55 4.30 -82.59 -0.36 1.19 16 8 C 0.22 3.06 1.78 -69.08 -0.12 2.93 16 9 H 0.10 1.54 5.35 -51.93 -0.28 1.27 16 10 N -0.74 -11.99 4.25 -59.82 -0.25 -12.24 16 11 C 0.72 14.83 8.45 -86.92 -0.73 14.09 16 12 O -0.60 -14.33 16.33 5.29 0.09 -14.24 16 13 N -0.63 -13.38 3.33 -176.11 -0.59 -13.97 16 14 C 0.10 1.89 6.57 -2.42 -0.02 1.88 16 15 C -0.12 -2.34 6.25 -24.47 -0.15 -2.49 16 16 C 0.25 6.06 0.85 -89.94 -0.08 5.99 16 17 O -0.59 -14.95 13.07 -35.23 -0.46 -15.41 16 18 C -0.54 -14.12 8.11 -34.44 -0.28 -14.40 16 19 H 0.07 1.74 7.77 -52.49 -0.41 1.33 16 20 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16 21 N -0.89 -24.05 10.96 55.43 0.61 -23.44 16 22 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 26 C 0.12 3.05 5.39 -3.07 -0.02 3.03 16 27 C -0.10 -1.37 2.90 -90.62 -0.26 -1.63 16 28 C -0.15 -1.51 8.30 37.15 0.31 -1.21 16 29 C -0.14 -1.75 8.50 37.16 0.32 -1.43 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 32 H 0.08 0.74 4.49 -51.93 -0.23 0.50 16 33 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.40 6.08 6.52 -40.82 -0.27 5.81 16 37 H 0.06 0.87 7.30 -51.93 -0.38 0.49 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.08 1.49 8.03 -51.93 -0.42 1.08 16 41 H 0.38 10.07 7.21 45.56 0.33 10.39 16 42 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.06 1.71 7.81 -51.93 -0.41 1.30 16 44 H 0.06 1.67 8.00 -51.92 -0.42 1.26 16 45 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.05 0.52 6.85 -51.93 -0.36 0.16 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.57 6.88 -51.93 -0.36 0.21 16 49 H 0.06 0.79 7.60 -51.93 -0.39 0.39 16 50 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 51 H 0.06 0.78 5.91 -51.93 -0.31 0.47 16 LS Contribution 397.68 15.07 5.99 5.99 Total: -1.00 -30.66 397.68 -9.65 -40.31 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -7.25 Total: 17.73 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -2.69 Total: 5.09 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.30 Total: -55.11 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.37 Total: -29.65 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.66 -9.65 -40.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591959775.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.806 kcal (2) G-P(sol) polarization free energy of solvation -30.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds