Wall clock time and date at job start Wed Apr 1 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38672 * 120.42152 * 2 1 4 4 C 1.38627 * 118.42362 * 180.02562 * 3 2 1 5 5 C 1.38230 * 119.16134 * 359.97438 * 4 3 2 6 6 N 1.31858 * 120.76033 * 359.72987 * 5 4 3 7 7 C 1.31884 * 121.72720 * 0.55970 * 6 5 4 8 8 C 1.50698 * 119.61716 * 179.71196 * 7 6 5 9 9 H 1.08998 * 109.47075 * 164.73104 * 8 7 6 10 10 N 1.46498 * 109.47187 * 44.73217 * 8 7 6 11 11 C 1.34778 * 120.00411 * 155.00322 * 10 8 7 12 12 O 1.21588 * 119.99371 * 359.97438 * 11 10 8 13 13 N 1.34769 * 120.00291 * 179.97438 * 11 10 8 14 14 C 1.47426 * 125.64968 * 359.95450 * 13 11 10 15 15 C 1.55118 * 104.94495 * 204.03960 * 14 13 11 16 16 C 1.55154 * 101.48474 * 323.22202 * 15 14 13 17 17 O 1.42896 * 110.72198 * 276.82816 * 16 15 14 18 18 C 1.50702 * 110.71956 * 153.73211 * 16 15 14 19 19 H 1.08002 * 120.00299 * 2.44550 * 18 16 15 20 20 C 1.37884 * 119.99942 * 182.16109 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 C 1.47019 * 125.65076 * 179.97438 * 13 11 10 27 27 C 1.52998 * 109.47008 * 284.72948 * 8 7 6 28 28 C 1.52994 * 109.47473 * 299.99921 * 27 8 7 29 29 C 1.53001 * 109.47318 * 60.00133 * 27 8 7 30 30 H 1.09004 * 109.47949 * 269.98089 * 1 2 3 31 31 H 1.08999 * 109.47338 * 29.98634 * 1 2 3 32 32 H 1.09003 * 109.47100 * 149.97880 * 1 2 3 33 33 H 1.08001 * 120.78412 * 359.97438 * 3 2 1 34 34 H 1.07997 * 120.41830 * 180.02562 * 4 3 2 35 35 H 1.08002 * 119.61614 * 180.02562 * 5 4 3 36 36 H 0.96999 * 119.99929 * 334.99636 * 10 8 7 37 37 H 1.09001 * 110.36602 * 323.00573 * 14 13 11 38 38 H 1.09000 * 110.36894 * 85.32760 * 14 13 11 39 39 H 1.09005 * 111.16464 * 205.12953 * 15 14 13 40 40 H 1.08998 * 110.93689 * 81.21185 * 15 14 13 41 41 H 0.96700 * 114.00666 * 177.55588 * 17 16 15 42 42 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 43 43 H 1.08999 * 109.88427 * 59.48270 * 26 13 11 44 44 H 1.09008 * 110.01210 * 298.39333 * 26 13 11 45 45 H 1.09003 * 109.46866 * 179.97438 * 27 8 7 46 46 H 1.09003 * 109.47205 * 60.00048 * 28 27 8 47 47 H 1.08994 * 109.47720 * 180.02562 * 28 27 8 48 48 H 1.09007 * 109.47225 * 300.00431 * 28 27 8 49 49 H 1.09003 * 109.47075 * 59.99541 * 29 27 8 50 50 H 1.09001 * 109.47172 * 179.97438 * 29 27 8 51 51 H 1.08995 * 109.46864 * 300.00270 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5945 1.1475 -0.0005 5 6 4.2256 -0.0824 -0.0005 6 7 3.5254 -1.1996 0.0053 7 6 2.2066 -1.1917 0.0004 8 6 1.4539 -2.4972 0.0009 9 1 0.4126 -2.3161 0.2672 10 7 2.0564 -3.4079 0.9776 11 6 1.3174 -4.3921 1.5267 12 8 0.1504 -4.5239 1.2119 13 7 1.8718 -5.2302 2.4248 14 6 3.2687 -5.1851 2.8939 15 6 3.5746 -6.6263 3.3791 16 6 2.2176 -7.0339 4.0114 17 8 2.1168 -6.5453 5.3505 18 6 2.0415 -8.5302 3.9772 19 1 2.8283 -9.1578 3.5855 20 6 0.8781 -9.0984 4.4514 21 7 -0.0800 -8.3342 4.9284 22 14 0.6629 -10.9536 4.4161 23 1 1.8770 -11.5818 3.8360 24 1 0.4595 -11.4548 5.7992 25 1 -0.5187 -11.2992 3.5856 26 6 1.1840 -6.3412 3.0986 27 6 1.5221 -3.1257 -1.3923 28 6 0.8928 -2.1747 -2.4123 29 6 2.9838 -3.3799 -1.7662 30 1 -0.3635 -0.0003 1.0276 31 1 -0.3634 0.8901 -0.5136 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6889 2.1423 -0.0004 34 1 4.1735 2.0592 -0.0001 35 1 5.3046 -0.1286 -0.0005 36 1 2.9873 -3.3026 1.2289 37 1 3.9348 -4.9096 2.0762 38 1 3.3690 -4.4807 3.7197 39 1 4.3699 -6.6302 4.1245 40 1 3.8249 -7.2750 2.5396 41 1 1.2718 -6.7410 5.7780 42 1 -0.8986 -8.7339 5.2617 43 1 0.8098 -7.0488 2.3588 44 1 0.3571 -5.9596 3.6976 45 1 0.9780 -4.0703 -1.3918 46 1 1.4372 -1.2304 -2.4127 47 1 0.9410 -2.6226 -3.4047 48 1 -0.1486 -1.9936 -2.1459 49 1 3.4321 -4.0575 -1.0395 50 1 3.0323 -3.8281 -2.7586 51 1 3.5282 -2.4357 -1.7665 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591959775.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:42 Heat of formation + Delta-G solvation = -65.098798 kcal Electronic energy + Delta-G solvation = -32067.066927 eV Core-core repulsion = 27965.397251 eV Total energy + Delta-G solvation = -4101.669676 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.97083 -40.99378 -39.26145 -37.61137 -36.08088 -34.69329 -34.19881 -34.18777 -32.66000 -31.59061 -29.63176 -28.54996 -28.11828 -27.50840 -26.41835 -24.31392 -23.63899 -23.03100 -21.51981 -21.20761 -20.45408 -19.39579 -18.98665 -17.83861 -17.60845 -17.16934 -16.82689 -16.62980 -16.28893 -16.19290 -15.78715 -15.33608 -15.15806 -14.88881 -14.76646 -14.66791 -14.51258 -14.11769 -13.90312 -13.71550 -13.70035 -13.50187 -13.38579 -13.32861 -13.25235 -12.87491 -12.85273 -12.54717 -12.43778 -12.34411 -12.27569 -12.24947 -12.09925 -11.88898 -11.59113 -11.32381 -11.19135 -10.65480 -10.61097 -10.42755 -10.29146 -10.11977 -9.71357 -9.40405 -8.26497 -6.42130 0.12058 0.37739 1.40073 1.43228 1.54227 1.66591 2.12299 2.37953 2.81567 3.00033 3.06027 3.18696 3.68319 3.78791 3.85491 3.96855 4.00360 4.06279 4.15237 4.15921 4.17526 4.18746 4.35064 4.51070 4.57299 4.59804 4.65027 4.70813 4.71504 4.73160 4.80188 4.83584 4.96511 4.98610 5.03490 5.11046 5.12644 5.20401 5.22815 5.25511 5.31538 5.35402 5.35522 5.44591 5.49374 5.56070 5.75041 5.83062 6.02035 6.16815 6.64567 7.03646 7.05038 7.28633 7.36176 7.55331 8.80044 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018266 B = 0.002712 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.504616 B =10323.385198 C =10649.215193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.129 4.129 3 C -0.078 4.078 4 C -0.160 4.160 5 C 0.081 3.919 6 N -0.488 5.488 7 C 0.108 3.892 8 C 0.217 3.783 9 H 0.086 0.914 10 N -0.718 5.718 11 C 0.712 3.288 12 O -0.639 6.639 13 N -0.634 5.634 14 C 0.109 3.891 15 C -0.109 4.109 16 C 0.234 3.766 17 O -0.588 6.588 18 C -0.555 4.555 19 H 0.068 0.932 20 C 0.024 3.976 21 N -0.916 5.916 22 Si 0.965 3.035 23 H -0.265 1.265 24 H -0.277 1.277 25 H -0.284 1.284 26 C 0.143 3.857 27 C -0.103 4.103 28 C -0.136 4.136 29 C -0.132 4.132 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.179 0.821 36 H 0.407 0.593 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.377 0.623 42 H 0.270 0.730 43 H 0.030 0.970 44 H 0.027 0.973 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.067 0.933 48 H 0.060 0.940 49 H 0.041 0.959 50 H 0.054 0.946 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.081 21.288 -12.825 26.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.131 4.131 3 C -0.104 4.104 4 C -0.179 4.179 5 C -0.076 4.076 6 N -0.197 5.197 7 C -0.029 4.029 8 C 0.111 3.889 9 H 0.104 0.896 10 N -0.374 5.374 11 C 0.414 3.586 12 O -0.521 6.521 13 N -0.371 5.371 14 C -0.013 4.013 15 C -0.146 4.146 16 C 0.194 3.806 17 O -0.396 6.396 18 C -0.594 4.594 19 H 0.086 0.914 20 C -0.177 4.177 21 N -0.556 5.556 22 Si 0.790 3.210 23 H -0.189 1.189 24 H -0.202 1.202 25 H -0.210 1.210 26 C 0.019 3.981 27 C -0.124 4.124 28 C -0.194 4.194 29 C -0.189 4.189 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.179 0.821 34 H 0.184 0.816 35 H 0.196 0.804 36 H 0.244 0.756 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.226 0.774 42 H 0.080 0.920 43 H 0.048 0.952 44 H 0.045 0.955 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.086 0.914 48 H 0.079 0.921 49 H 0.060 0.940 50 H 0.073 0.927 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.092 20.651 -13.133 25.776 hybrid contribution -1.326 -0.728 0.553 1.611 sum 6.766 19.923 -12.580 24.514 Atomic orbital electron populations 1.20969 0.89756 1.04233 1.03013 1.20823 0.98181 0.93443 1.00698 1.21829 0.94668 0.98200 0.95661 1.22511 0.95257 1.00394 0.99755 1.23238 1.01404 0.87543 0.95405 1.67353 1.07272 1.33001 1.12095 1.20758 0.90341 0.93517 0.98286 1.19756 0.96055 0.84629 0.88424 0.89610 1.44944 1.14732 1.31849 1.45885 1.15683 0.84198 0.79803 0.78870 1.90831 1.17462 1.76095 1.67720 1.47853 1.13667 1.32305 1.43278 1.22369 0.81386 0.98370 0.99163 1.22744 0.97067 0.94605 1.00219 1.19704 0.90684 0.90903 0.79358 1.86075 1.42415 1.81780 1.29367 1.21863 1.02611 0.92347 1.42538 0.91424 1.25838 0.95075 1.03136 0.93602 1.69763 1.07195 1.36993 1.41630 0.85400 0.78086 0.79660 0.77843 1.18860 1.20216 1.21005 1.22351 0.96071 0.85500 0.94213 1.21443 0.98272 0.98871 0.93787 1.21785 1.00525 0.98742 0.98312 1.21732 0.94622 1.02267 1.00267 0.91199 0.88584 0.91455 0.82061 0.81620 0.80413 0.75581 0.88834 0.91532 0.89064 0.89851 0.77352 0.92043 0.95158 0.95480 0.93076 0.92140 0.91443 0.92104 0.94030 0.92705 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.01 9.23 71.23 0.66 -1.35 16 2 C -0.13 -2.36 5.34 -19.78 -0.11 -2.47 16 3 C -0.08 -1.00 9.86 22.47 0.22 -0.78 16 4 C -0.16 -1.80 10.11 22.36 0.23 -1.57 16 5 C 0.08 1.21 11.18 84.69 0.95 2.16 16 6 N -0.49 -10.34 7.31 -183.88 -1.34 -11.68 16 7 C 0.11 2.47 4.30 42.54 0.18 2.65 16 8 C 0.22 6.16 1.78 44.24 0.08 6.24 16 9 H 0.09 2.72 5.35 -2.39 -0.01 2.70 16 10 N -0.72 -23.65 4.25 -461.43 -1.96 -25.61 16 11 C 0.71 30.57 8.45 179.06 1.51 32.08 16 12 O -0.64 -32.37 16.33 -3.99 -0.07 -32.43 16 13 N -0.63 -27.68 3.33 -829.34 -2.76 -30.44 16 14 C 0.11 3.88 6.57 86.93 0.57 4.45 16 15 C -0.11 -4.30 6.25 32.06 0.20 -4.10 16 16 C 0.23 11.68 0.85 -10.35 -0.01 11.67 16 17 O -0.59 -30.60 13.07 -148.98 -1.95 -32.54 16 18 C -0.56 -29.75 8.11 25.60 0.21 -29.54 16 19 H 0.07 3.52 7.77 -2.91 -0.02 3.50 16 20 C 0.02 1.29 5.28 84.66 0.45 1.74 16 21 N -0.92 -50.89 10.96 21.45 0.24 -50.65 16 22 Si 0.96 42.85 29.54 68.60 2.03 44.88 16 23 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 24 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 26 C 0.14 7.41 5.39 86.73 0.47 7.87 16 27 C -0.10 -2.75 2.90 -10.80 -0.03 -2.78 16 28 C -0.14 -2.76 8.30 71.98 0.60 -2.16 16 29 C -0.13 -3.20 8.50 71.98 0.61 -2.58 16 30 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.10 1.03 8.10 -2.39 -0.02 1.01 16 32 H 0.07 1.26 4.49 -2.39 -0.01 1.25 16 33 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 34 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 35 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.41 12.11 6.52 -92.71 -0.60 11.50 16 37 H 0.09 2.65 7.30 -2.39 -0.02 2.63 16 38 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.09 3.33 8.14 -2.38 -0.02 3.31 16 40 H 0.08 3.17 8.03 -2.39 -0.02 3.15 16 41 H 0.38 20.51 7.21 -74.06 -0.53 19.97 16 42 H 0.27 14.31 8.31 -92.70 -0.77 13.54 16 43 H 0.03 1.73 7.81 -2.39 -0.02 1.71 16 44 H 0.03 1.56 8.00 -2.38 -0.02 1.54 16 45 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.06 1.13 6.85 -2.39 -0.02 1.11 16 47 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.06 1.19 6.88 -2.38 -0.02 1.17 16 49 H 0.04 1.12 7.60 -2.39 -0.02 1.10 16 50 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.07 1.65 5.91 -2.39 -0.01 1.63 16 Total: -1.00 -69.69 397.68 0.79 -68.90 By element: Atomic # 1 Polarization: 48.24 SS G_CDS: -0.18 Total: 48.06 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: 6.78 Total: 21.52 kcal Atomic # 7 Polarization: -112.55 SS G_CDS: -5.83 Total: -118.38 kcal Atomic # 8 Polarization: -62.96 SS G_CDS: -2.01 Total: -64.98 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -69.69 0.79 -68.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591959775.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.800 kcal (2) G-P(sol) polarization free energy of solvation -69.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds