Wall clock time and date at job start Wed Apr 1 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38674 * 120.41397 * 2 1 4 4 C 1.38631 * 118.41751 * 180.24510 * 3 2 1 5 5 C 1.38234 * 119.16060 * 359.75032 * 4 3 2 6 6 N 1.31854 * 120.76004 * 0.02562 * 5 4 3 7 7 C 1.31875 * 121.72947 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.61643 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.47161 * 191.71505 * 8 7 6 10 10 N 1.46492 * 109.47208 * 311.71837 * 8 7 6 11 11 C 1.34778 * 119.99745 * 204.99598 * 10 8 7 12 12 O 1.21589 * 120.00492 * 0.02562 * 11 10 8 13 13 N 1.34780 * 120.00006 * 179.97438 * 11 10 8 14 14 C 1.47432 * 125.64627 * 0.02946 * 13 11 10 15 15 C 1.54902 * 104.82883 * 204.08839 * 14 13 11 16 16 C 1.55153 * 101.58511 * 322.98867 * 15 14 13 17 17 O 1.42900 * 110.72447 * 277.13761 * 16 15 14 18 18 C 1.50707 * 110.71968 * 154.04310 * 16 15 14 19 19 H 1.07998 * 119.99845 * 0.02562 * 18 16 15 20 20 C 1.37884 * 119.99771 * 180.02562 * 18 16 15 21 21 N 1.31508 * 119.99993 * 0.02562 * 20 18 16 22 22 Si 1.86802 * 119.99737 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46552 * 90.00055 * 22 20 18 24 24 H 1.48499 * 109.46839 * 210.00167 * 22 20 18 25 25 H 1.48503 * 109.47112 * 330.00258 * 22 20 18 26 26 C 1.47022 * 125.65028 * 179.71416 * 13 11 10 27 27 C 1.53000 * 109.46940 * 71.72102 * 8 7 6 28 28 C 1.53001 * 109.47429 * 59.99761 * 27 8 7 29 29 C 1.53002 * 109.47343 * 179.97438 * 27 8 7 30 30 H 1.08999 * 109.46992 * 264.16485 * 1 2 3 31 31 H 1.09001 * 109.47666 * 24.16473 * 1 2 3 32 32 H 1.09003 * 109.47156 * 144.16979 * 1 2 3 33 33 H 1.08000 * 120.79135 * 0.02562 * 3 2 1 34 34 H 1.08000 * 120.41612 * 179.72629 * 4 3 2 35 35 H 1.08001 * 119.61639 * 180.02562 * 5 4 3 36 36 H 0.97000 * 120.00064 * 25.00589 * 10 8 7 37 37 H 1.08996 * 110.36438 * 322.92755 * 14 13 11 38 38 H 1.08998 * 110.36515 * 85.25239 * 14 13 11 39 39 H 1.08998 * 111.00578 * 81.06799 * 15 14 13 40 40 H 1.09009 * 111.00483 * 204.87879 * 15 14 13 41 41 H 0.96692 * 114.00464 * 179.97438 * 17 16 15 42 42 H 0.97005 * 119.99999 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.88593 * 298.39854 * 26 13 11 44 44 H 1.09000 * 109.87903 * 59.56344 * 26 13 11 45 45 H 1.09004 * 109.46813 * 300.00226 * 27 8 7 46 46 H 1.08998 * 109.47011 * 59.99563 * 28 27 8 47 47 H 1.09000 * 109.47425 * 180.02562 * 28 27 8 48 48 H 1.09004 * 109.47207 * 300.00566 * 28 27 8 49 49 H 1.08995 * 109.46637 * 59.99690 * 29 27 8 50 50 H 1.09000 * 109.46908 * 179.97438 * 29 27 8 51 51 H 1.09003 * 109.47028 * 299.99569 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1959 0.0000 4 6 3.5945 1.1476 -0.0052 5 6 4.2256 -0.0823 -0.0049 6 7 3.5254 -1.1995 -0.0003 7 6 2.2067 -1.1915 0.0047 8 6 1.4541 -2.4972 0.0093 9 1 0.4000 -2.3097 -0.1956 10 7 2.0025 -3.3806 -1.0226 11 6 1.2341 -4.3501 -1.5576 12 8 0.0856 -4.4912 -1.1842 13 7 1.7385 -5.1626 -2.5073 14 6 3.1078 -5.1028 -3.0506 15 6 3.0064 -5.7521 -4.4533 16 6 1.9799 -6.8871 -4.1979 17 8 2.6242 -8.0366 -3.6449 18 6 1.2537 -7.2453 -5.4689 19 1 1.4850 -6.7265 -6.3875 20 6 0.2942 -8.2354 -5.4591 21 7 0.0123 -8.8668 -4.3404 22 14 -0.6065 -8.6789 -7.0344 23 1 0.1367 -9.7508 -7.7443 24 1 -1.9728 -9.1583 -6.7052 25 1 -0.6991 -7.4800 -7.9059 26 6 1.0165 -6.2594 -3.1685 27 6 1.5966 -3.1632 1.3793 28 6 1.0238 -2.2405 2.4571 29 6 0.8319 -4.4884 1.3843 30 1 -0.3633 -0.1045 1.0223 31 1 -0.3634 0.9376 -0.4207 32 1 -0.3633 -0.8332 -0.6016 33 1 1.6888 2.1424 0.0004 34 1 4.1734 2.0594 -0.0098 35 1 5.3046 -0.1285 -0.0086 36 1 2.9187 -3.2679 -1.3207 37 1 3.4376 -4.0674 -3.1348 38 1 3.7916 -5.6695 -2.4188 39 1 2.6276 -5.0404 -5.1868 40 1 3.9685 -6.1579 -4.7665 41 1 2.0259 -8.7749 -3.4661 42 1 -0.6631 -9.5631 -4.3334 43 1 0.7206 -7.0060 -2.4314 44 1 0.1354 -5.8691 -3.6780 45 1 2.6506 -3.3506 1.5843 46 1 -0.0302 -2.0529 2.2521 47 1 1.1257 -2.7147 3.4332 48 1 1.5681 -1.2961 2.4537 49 1 1.2396 -5.1459 0.6165 50 1 0.9339 -4.9630 2.3602 51 1 -0.2221 -4.3005 1.1796 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591959776.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:47 Heat of formation + Delta-G solvation = -47.034673 kcal Electronic energy + Delta-G solvation = -32085.095193 eV Core-core repulsion = 27984.208837 eV Total energy + Delta-G solvation = -4100.886356 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.96296 -39.58670 -37.70151 -36.14217 -34.22948 -33.89927 -32.96763 -32.12725 -31.97188 -29.88519 -27.96672 -27.61527 -26.92959 -26.36960 -24.72911 -23.02883 -22.41804 -22.02929 -20.03670 -19.59833 -19.40584 -17.75821 -17.12940 -16.82404 -16.55994 -15.78154 -15.58419 -15.18546 -15.02921 -14.70737 -14.37341 -14.24214 -13.92747 -13.71825 -13.32096 -13.06821 -12.99315 -12.91392 -12.87193 -12.77947 -12.51909 -12.35929 -12.13632 -11.91665 -11.65179 -11.53128 -11.36125 -11.28696 -11.03384 -10.79607 -10.73651 -10.59635 -10.54035 -10.46405 -10.12193 -9.98072 -9.67664 -9.49697 -9.29917 -9.04269 -8.65729 -8.63559 -8.27307 -7.69250 -6.26162 -4.34463 0.82547 1.03019 3.14400 3.23719 3.30509 3.33286 3.56174 3.78431 4.03405 4.28404 4.39072 4.52406 4.55567 4.71502 4.76677 4.99431 5.01662 5.03548 5.14003 5.24786 5.31702 5.36262 5.44627 5.45348 5.55241 5.67700 5.76760 5.82596 5.83895 5.85873 5.92469 5.99466 6.02258 6.04897 6.10236 6.16539 6.20439 6.40815 6.50834 6.55952 6.72552 6.77976 6.86327 6.92814 7.05477 7.31009 7.37570 7.72342 7.77144 7.77477 8.05961 8.59959 8.69647 9.20306 9.34425 9.48053 10.81584 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016502 B = 0.002774 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.371140 B =10091.617159 C =10449.907081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C -0.077 4.077 4 C -0.172 4.172 5 C 0.094 3.906 6 N -0.471 5.471 7 C 0.127 3.873 8 C 0.219 3.781 9 H 0.105 0.895 10 N -0.740 5.740 11 C 0.717 3.283 12 O -0.594 6.594 13 N -0.629 5.629 14 C 0.104 3.896 15 C -0.116 4.116 16 C 0.249 3.751 17 O -0.587 6.587 18 C -0.536 4.536 19 H 0.066 0.934 20 C 0.070 3.930 21 N -0.895 5.895 22 Si 0.904 3.096 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.123 3.877 27 C -0.099 4.099 28 C -0.144 4.144 29 C -0.136 4.136 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.156 0.844 36 H 0.398 0.602 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.386 0.614 42 H 0.271 0.729 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.057 0.943 47 H 0.056 0.944 48 H 0.048 0.952 49 H 0.060 0.940 50 H 0.043 0.957 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.378 19.092 11.002 22.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.124 4.124 3 C -0.103 4.103 4 C -0.192 4.192 5 C -0.063 4.063 6 N -0.180 5.180 7 C -0.011 4.011 8 C 0.112 3.888 9 H 0.123 0.877 10 N -0.397 5.397 11 C 0.419 3.581 12 O -0.473 6.473 13 N -0.366 5.366 14 C -0.019 4.019 15 C -0.154 4.154 16 C 0.208 3.792 17 O -0.397 6.397 18 C -0.575 4.575 19 H 0.084 0.916 20 C -0.133 4.133 21 N -0.534 5.534 22 Si 0.731 3.269 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C 0.000 4.000 27 C -0.119 4.119 28 C -0.202 4.202 29 C -0.193 4.193 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.173 0.827 36 H 0.234 0.766 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.238 0.762 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.067 0.933 49 H 0.079 0.921 50 H 0.062 0.938 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.328 18.436 11.327 22.284 hybrid contribution -0.833 0.396 -0.841 1.248 sum 4.495 18.832 10.486 22.018 Atomic orbital electron populations 1.20925 0.90075 1.03580 1.03164 1.20695 0.97738 0.93291 1.00653 1.21479 0.94185 0.97929 0.96713 1.22137 0.95257 0.99658 1.02139 1.22741 1.00297 0.87567 0.95693 1.67399 1.07521 1.31616 1.11438 1.21180 0.89873 0.94485 0.95558 1.19758 0.97188 0.83836 0.88033 0.87724 1.45085 1.16395 1.35175 1.43005 1.15435 0.84377 0.79145 0.79095 1.90879 1.17081 1.74027 1.65289 1.47924 1.14352 1.34595 1.39718 1.22220 0.84377 0.99056 0.96288 1.22726 1.00714 0.97796 0.94184 1.19486 0.87106 0.82935 0.89662 1.86070 1.41064 1.27013 1.85519 1.21524 1.20783 1.20152 0.95020 0.91564 1.25072 0.95955 0.95405 0.96833 1.69579 1.33304 1.24573 1.25961 0.86399 0.78839 0.78803 0.82839 1.20409 1.20995 1.19735 1.22861 0.96012 0.86157 0.94936 1.21505 1.00919 0.96224 0.93252 1.21834 1.00924 0.98912 0.98490 1.21835 1.01044 0.95750 1.00654 0.90399 0.91196 0.90212 0.84809 0.84852 0.82693 0.76648 0.92772 0.92000 0.90690 0.90639 0.76233 0.91931 0.92056 0.91951 0.90794 0.92377 0.92443 0.93316 0.92064 0.93820 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.36 36.01 0.34 -0.71 16 2 C -0.12 -1.23 5.62 -104.48 -0.59 -1.82 16 3 C -0.08 -0.64 9.84 -39.28 -0.39 -1.02 16 4 C -0.17 -1.34 10.11 -39.44 -0.40 -1.74 16 5 C 0.09 0.88 11.18 -17.54 -0.20 0.68 16 6 N -0.47 -5.67 9.68 -9.47 -0.09 -5.76 16 7 C 0.13 1.55 4.50 -82.59 -0.37 1.17 16 8 C 0.22 3.04 1.95 -69.08 -0.13 2.91 16 9 H 0.11 1.55 4.99 -51.93 -0.26 1.29 16 10 N -0.74 -11.97 4.91 -59.81 -0.29 -12.26 16 11 C 0.72 14.46 6.84 -86.91 -0.59 13.86 16 12 O -0.59 -13.52 13.79 5.29 0.07 -13.45 16 13 N -0.63 -13.23 3.33 -176.23 -0.59 -13.82 16 14 C 0.10 1.90 6.56 -2.53 -0.02 1.88 16 15 C -0.12 -2.36 6.23 -24.59 -0.15 -2.51 16 16 C 0.25 6.08 0.86 -89.93 -0.08 6.00 16 17 O -0.59 -15.00 13.07 -35.23 -0.46 -15.46 16 18 C -0.54 -14.11 8.12 -34.43 -0.28 -14.39 16 19 H 0.07 1.71 7.76 -52.49 -0.41 1.30 16 20 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 21 N -0.89 -23.94 10.97 55.43 0.61 -23.34 16 22 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 C 0.12 3.00 5.54 -3.06 -0.02 2.99 16 27 C -0.10 -1.31 2.68 -90.62 -0.24 -1.55 16 28 C -0.14 -1.53 8.93 37.16 0.33 -1.20 16 29 C -0.14 -2.09 7.72 37.16 0.29 -1.81 16 30 H 0.08 0.59 7.87 -51.93 -0.41 0.18 16 31 H 0.07 0.48 8.06 -51.93 -0.42 0.06 16 32 H 0.08 0.82 6.27 -51.93 -0.33 0.50 16 33 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 35 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.40 6.09 6.61 -40.82 -0.27 5.83 16 37 H 0.05 0.84 7.30 -51.93 -0.38 0.46 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.07 1.47 8.03 -51.93 -0.42 1.05 16 40 H 0.08 1.45 8.14 -51.92 -0.42 1.03 16 41 H 0.39 10.18 6.98 45.56 0.32 10.49 16 42 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.06 1.64 8.07 -51.93 -0.42 1.22 16 44 H 0.06 1.66 7.82 -51.93 -0.41 1.25 16 45 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.06 0.58 7.87 -51.93 -0.41 0.17 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.05 0.50 7.01 -51.93 -0.36 0.14 16 49 H 0.06 1.14 5.77 -51.93 -0.30 0.84 16 50 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 51 H 0.06 1.06 7.53 -51.93 -0.39 0.67 16 LS Contribution 399.07 15.07 6.01 6.01 Total: -1.00 -30.08 399.07 -9.72 -39.81 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: -7.37 Total: 18.23 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -2.59 Total: 4.50 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.36 Total: -55.17 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.39 Total: -28.91 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.08 -9.72 -39.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591959776.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.227 kcal (2) G-P(sol) polarization free energy of solvation -30.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds