Wall clock time and date at job start Wed Apr 1 2020 06:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38678 * 120.42048 * 2 1 4 4 C 1.38625 * 118.42261 * 179.97438 * 3 2 1 5 5 C 1.38222 * 119.16079 * 359.97438 * 4 3 2 6 6 N 1.31852 * 120.76521 * 359.97438 * 5 4 3 7 7 C 1.31887 * 121.72439 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.61731 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.46885 * 195.00486 * 8 7 6 10 10 N 1.46500 * 109.47054 * 315.00566 * 8 7 6 11 11 C 1.34779 * 119.99781 * 204.99925 * 10 8 7 12 12 O 1.21590 * 120.00120 * 359.97438 * 11 10 8 13 13 N 1.34774 * 119.99937 * 179.97438 * 11 10 8 14 14 C 1.47424 * 125.64944 * 359.69002 * 13 11 10 15 15 C 1.55130 * 104.72441 * 155.81668 * 14 13 11 16 16 C 1.55155 * 101.48473 * 37.29683 * 15 14 13 17 17 O 1.42898 * 110.71967 * 82.69707 * 16 15 14 18 18 C 1.50694 * 110.87418 * 205.89961 * 16 15 14 19 19 H 1.08006 * 120.00095 * 355.06038 * 18 16 15 20 20 C 1.37875 * 120.00381 * 175.06598 * 18 16 15 21 21 N 1.31516 * 119.99958 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 120.00334 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47503 * 89.99756 * 22 20 18 24 24 H 1.48508 * 109.47198 * 210.00038 * 22 20 18 25 25 H 1.48504 * 109.47046 * 329.99373 * 22 20 18 26 26 C 1.47015 * 125.64966 * 179.97438 * 13 11 10 27 27 C 1.53003 * 109.47058 * 75.00351 * 8 7 6 28 28 C 1.52999 * 109.46957 * 59.99726 * 27 8 7 29 29 C 1.52998 * 109.46962 * 180.02562 * 27 8 7 30 30 H 1.09005 * 109.47240 * 89.99753 * 1 2 3 31 31 H 1.08995 * 109.47078 * 210.00446 * 1 2 3 32 32 H 1.09000 * 109.47377 * 330.00145 * 1 2 3 33 33 H 1.08003 * 120.78653 * 0.25102 * 3 2 1 34 34 H 1.07999 * 120.41646 * 179.97438 * 4 3 2 35 35 H 1.07997 * 119.61999 * 179.97438 * 5 4 3 36 36 H 0.97000 * 120.00285 * 24.99528 * 10 8 7 37 37 H 1.09001 * 110.36873 * 274.74955 * 14 13 11 38 38 H 1.09009 * 110.36557 * 37.07303 * 14 13 11 39 39 H 1.09004 * 111.19050 * 279.19186 * 15 14 13 40 40 H 1.08995 * 110.90952 * 155.27849 * 15 14 13 41 41 H 0.96696 * 114.00088 * 185.02842 * 17 16 15 42 42 H 0.96995 * 120.00454 * 180.02562 * 21 20 18 43 43 H 1.09003 * 109.88355 * 300.43949 * 26 13 11 44 44 H 1.08999 * 109.88598 * 61.45034 * 26 13 11 45 45 H 1.08997 * 109.46723 * 300.00118 * 27 8 7 46 46 H 1.09010 * 109.47049 * 60.00011 * 28 27 8 47 47 H 1.08995 * 109.46919 * 179.97438 * 28 27 8 48 48 H 1.09004 * 109.47597 * 300.00228 * 28 27 8 49 49 H 1.08992 * 109.47537 * 60.00142 * 29 27 8 50 50 H 1.09000 * 109.46641 * 180.02562 * 29 27 8 51 51 H 1.08998 * 109.46885 * 299.99509 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1475 0.0005 5 6 4.2256 -0.0822 0.0016 6 7 3.5255 -1.1995 0.0026 7 6 2.2066 -1.1915 0.0021 8 6 1.4539 -2.4972 0.0027 9 1 0.4126 -2.3163 -0.2638 10 7 2.0565 -3.4087 -0.9730 11 6 1.3174 -4.3934 -1.5213 12 8 0.1506 -4.5254 -1.2058 13 7 1.8717 -5.2317 -2.4194 14 6 3.2662 -5.1817 -2.8948 15 6 3.5721 -6.6257 -3.3721 16 6 2.2167 -7.0349 -4.0068 17 8 2.1161 -6.5432 -5.3448 18 6 2.0392 -8.5310 -3.9760 19 1 2.8404 -9.1627 -3.6217 20 6 0.8540 -9.0936 -4.4000 21 7 -0.1218 -8.3244 -4.8311 22 14 0.6337 -10.9481 -4.3611 23 1 0.0679 -11.3520 -3.0489 24 1 -0.2920 -11.3596 -5.4470 25 1 1.9500 -11.6072 -4.5566 26 6 1.1841 -6.3438 -3.0915 27 6 1.5220 -3.1245 1.3966 28 6 0.8927 -2.1724 2.4156 29 6 0.7584 -4.4503 1.3970 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.6890 2.1424 0.0041 34 1 4.1735 2.0593 0.0001 35 1 5.3045 -0.1285 0.0016 36 1 2.9874 -3.3036 -1.2245 37 1 3.3600 -4.4783 -3.7222 38 1 3.9349 -4.9023 -2.0805 39 1 3.8216 -7.2739 -2.5320 40 1 4.3687 -6.6290 -4.1160 41 1 1.2579 -6.7051 -5.7599 42 1 -0.9558 -8.7201 -5.1291 43 1 0.8125 -7.0519 -2.3508 44 1 0.3550 -5.9614 -3.6870 45 1 2.5634 -3.3053 1.6630 46 1 -0.1487 -1.9915 2.1491 47 1 0.9409 -2.6195 3.4085 48 1 1.4371 -1.2281 2.4152 49 1 1.2071 -5.1283 0.6711 50 1 0.8066 -4.8969 2.3901 51 1 -0.2829 -4.2698 1.1304 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591959777.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:50 Heat of formation + Delta-G solvation = -46.577888 kcal Electronic energy + Delta-G solvation = -32108.965128 eV Core-core repulsion = 28008.098579 eV Total energy + Delta-G solvation = -4100.866549 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.97108 -39.57938 -37.70670 -36.16502 -34.20690 -33.90355 -32.93887 -32.18456 -31.96203 -29.87313 -27.95589 -27.58352 -26.96547 -26.33794 -24.71544 -23.02303 -22.40751 -22.04441 -20.04764 -19.61110 -19.40687 -17.74742 -17.07818 -16.83139 -16.54757 -15.84802 -15.42680 -15.20937 -15.10757 -14.66508 -14.36245 -14.26562 -13.88350 -13.76622 -13.32699 -13.01803 -12.97259 -12.88370 -12.84896 -12.80529 -12.60270 -12.40899 -12.03202 -12.00688 -11.61628 -11.53620 -11.37174 -11.29418 -11.01240 -10.79041 -10.75151 -10.60675 -10.51941 -10.46067 -10.12695 -9.97899 -9.67247 -9.47649 -9.26583 -9.03770 -8.64116 -8.63755 -8.26919 -7.68007 -6.24087 -4.32369 0.82955 1.03466 3.15474 3.24728 3.31574 3.34486 3.55924 3.79607 4.02928 4.29959 4.39869 4.52687 4.56433 4.72579 4.77640 4.97741 5.02070 5.03836 5.14537 5.24145 5.34931 5.38360 5.40508 5.45560 5.57830 5.66789 5.77505 5.77632 5.82979 5.84111 5.93912 5.98300 5.99588 6.06994 6.08833 6.16603 6.19715 6.40095 6.50601 6.56760 6.72082 6.78246 6.87000 6.94948 7.06291 7.32672 7.38299 7.74671 7.77423 7.77646 8.09027 8.61320 8.71931 9.21645 9.33960 9.42480 10.83674 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.002793 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.959138 B =10023.960646 C =10630.603341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C -0.077 4.077 4 C -0.172 4.172 5 C 0.095 3.905 6 N -0.472 5.472 7 C 0.128 3.872 8 C 0.219 3.781 9 H 0.104 0.896 10 N -0.740 5.740 11 C 0.717 3.283 12 O -0.593 6.593 13 N -0.630 5.630 14 C 0.103 3.897 15 C -0.115 4.115 16 C 0.248 3.752 17 O -0.585 6.585 18 C -0.536 4.536 19 H 0.066 0.934 20 C 0.071 3.929 21 N -0.893 5.893 22 Si 0.903 3.097 23 H -0.278 1.278 24 H -0.285 1.285 25 H -0.273 1.273 26 C 0.125 3.875 27 C -0.100 4.100 28 C -0.145 4.145 29 C -0.136 4.136 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.156 0.844 36 H 0.399 0.601 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.382 0.618 42 H 0.269 0.731 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.049 0.951 49 H 0.061 0.939 50 H 0.043 0.957 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.196 18.842 11.456 22.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.123 4.123 3 C -0.103 4.103 4 C -0.192 4.192 5 C -0.063 4.063 6 N -0.181 5.181 7 C -0.010 4.010 8 C 0.113 3.887 9 H 0.122 0.878 10 N -0.396 5.396 11 C 0.419 3.581 12 O -0.472 6.472 13 N -0.367 5.367 14 C -0.020 4.020 15 C -0.153 4.153 16 C 0.207 3.793 17 O -0.394 6.394 18 C -0.574 4.574 19 H 0.084 0.916 20 C -0.133 4.133 21 N -0.532 5.532 22 Si 0.730 3.270 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C 0.003 3.997 27 C -0.120 4.120 28 C -0.203 4.203 29 C -0.193 4.193 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.173 0.827 36 H 0.234 0.766 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.232 0.768 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.068 0.932 49 H 0.080 0.920 50 H 0.062 0.938 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.157 18.141 11.754 22.223 hybrid contribution -0.602 -0.111 -0.208 0.646 sum 4.555 18.031 11.546 21.890 Atomic orbital electron populations 1.20958 0.90092 1.03599 1.03311 1.20685 0.97729 0.93275 1.00659 1.21469 0.94184 0.97942 0.96728 1.22127 0.95254 0.99652 1.02170 1.22731 1.00290 0.87567 0.95677 1.67383 1.07522 1.31645 1.11520 1.21193 0.89882 0.94488 0.95482 1.19716 0.96564 0.83496 0.88966 0.87815 1.45071 1.14857 1.33133 1.46570 1.15435 0.84517 0.79192 0.78934 1.90880 1.15425 1.74822 1.66118 1.47949 1.12759 1.32839 1.43136 1.22270 0.82847 0.99272 0.97643 1.22752 0.99095 0.93482 0.99988 1.19511 0.88487 0.91484 0.79806 1.86106 1.40842 1.83074 1.29363 1.21487 1.00487 0.91134 1.44338 0.91610 1.25066 0.95426 0.98960 0.93814 1.69700 1.05276 1.35503 1.42717 0.86418 0.78137 0.84587 0.77846 1.20439 1.21031 1.19737 1.22823 0.96382 0.85113 0.95381 1.21518 1.00789 0.96298 0.93399 1.21876 1.00738 0.98824 0.98872 1.21836 1.01134 0.95783 1.00550 0.90423 0.90203 0.91094 0.84808 0.84849 0.82691 0.76568 0.92188 0.92555 0.90501 0.90726 0.76825 0.92058 0.91818 0.91981 0.90843 0.92299 0.92404 0.93182 0.92005 0.93807 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.24 36.00 0.33 -0.73 16 2 C -0.12 -1.23 5.34 -104.48 -0.56 -1.79 16 3 C -0.08 -0.64 9.86 -39.28 -0.39 -1.03 16 4 C -0.17 -1.35 10.11 -39.44 -0.40 -1.75 16 5 C 0.09 0.89 11.18 -17.55 -0.20 0.69 16 6 N -0.47 -5.71 9.57 -9.48 -0.09 -5.80 16 7 C 0.13 1.56 4.64 -82.59 -0.38 1.18 16 8 C 0.22 3.07 1.79 -69.08 -0.12 2.94 16 9 H 0.10 1.55 5.35 -51.93 -0.28 1.27 16 10 N -0.74 -12.02 4.91 -59.81 -0.29 -12.31 16 11 C 0.72 14.52 6.84 -86.92 -0.59 13.93 16 12 O -0.59 -13.60 13.79 5.29 0.07 -13.53 16 13 N -0.63 -13.28 3.32 -176.10 -0.59 -13.86 16 14 C 0.10 1.88 6.58 -2.41 -0.02 1.87 16 15 C -0.12 -2.33 6.24 -24.46 -0.15 -2.49 16 16 C 0.25 6.04 0.85 -89.94 -0.08 5.96 16 17 O -0.59 -14.82 13.07 -35.23 -0.46 -15.28 16 18 C -0.54 -14.12 8.13 -34.44 -0.28 -14.40 16 19 H 0.07 1.71 7.78 -52.48 -0.41 1.30 16 20 C 0.07 1.86 5.28 -17.82 -0.09 1.76 16 21 N -0.89 -23.98 10.96 55.43 0.61 -23.37 16 22 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 26 C 0.13 3.07 5.23 -3.07 -0.02 3.06 16 27 C -0.10 -1.31 2.68 -90.62 -0.24 -1.55 16 28 C -0.15 -1.53 8.31 37.16 0.31 -1.22 16 29 C -0.14 -2.08 7.72 37.16 0.29 -1.79 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.74 4.49 -51.93 -0.23 0.51 16 32 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 33 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 36 H 0.40 6.13 6.52 -40.82 -0.27 5.86 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.06 0.87 7.29 -51.92 -0.38 0.49 16 39 H 0.08 1.51 8.05 -51.93 -0.42 1.09 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.38 9.89 7.45 45.56 0.34 10.23 16 42 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.06 1.71 7.82 -51.93 -0.41 1.30 16 44 H 0.06 1.67 7.92 -51.93 -0.41 1.26 16 45 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.06 0.58 6.88 -51.92 -0.36 0.23 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.05 0.51 6.86 -51.93 -0.36 0.15 16 49 H 0.06 1.13 5.77 -51.93 -0.30 0.83 16 50 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.06 1.06 7.53 -51.93 -0.39 0.67 16 LS Contribution 395.62 15.07 5.96 5.96 Total: -1.00 -30.22 395.62 -9.62 -39.85 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: -7.22 Total: 18.08 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -2.59 Total: 4.63 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.36 Total: -55.34 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.39 Total: -28.81 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.22 -9.62 -39.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591959777.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.731 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds