Wall clock time and date at job start Wed Apr 1 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38678 * 120.42048 * 2 1 4 4 C 1.38625 * 118.42261 * 179.97438 * 3 2 1 5 5 C 1.38222 * 119.16079 * 359.97438 * 4 3 2 6 6 N 1.31852 * 120.76521 * 359.97438 * 5 4 3 7 7 C 1.31887 * 121.72439 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.61731 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.46885 * 195.00486 * 8 7 6 10 10 N 1.46500 * 109.47054 * 315.00566 * 8 7 6 11 11 C 1.34779 * 119.99781 * 204.99925 * 10 8 7 12 12 O 1.21590 * 120.00120 * 359.97438 * 11 10 8 13 13 N 1.34774 * 119.99937 * 179.97438 * 11 10 8 14 14 C 1.47424 * 125.64944 * 359.69002 * 13 11 10 15 15 C 1.55130 * 104.72441 * 155.81668 * 14 13 11 16 16 C 1.55155 * 101.48473 * 37.29683 * 15 14 13 17 17 O 1.42898 * 110.71967 * 82.69707 * 16 15 14 18 18 C 1.50694 * 110.87418 * 205.89961 * 16 15 14 19 19 H 1.08006 * 120.00095 * 355.06038 * 18 16 15 20 20 C 1.37875 * 120.00381 * 175.06598 * 18 16 15 21 21 N 1.31516 * 119.99958 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 120.00334 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47503 * 89.99756 * 22 20 18 24 24 H 1.48508 * 109.47198 * 210.00038 * 22 20 18 25 25 H 1.48504 * 109.47046 * 329.99373 * 22 20 18 26 26 C 1.47015 * 125.64966 * 179.97438 * 13 11 10 27 27 C 1.53003 * 109.47058 * 75.00351 * 8 7 6 28 28 C 1.52999 * 109.46957 * 59.99726 * 27 8 7 29 29 C 1.52998 * 109.46962 * 180.02562 * 27 8 7 30 30 H 1.09005 * 109.47240 * 89.99753 * 1 2 3 31 31 H 1.08995 * 109.47078 * 210.00446 * 1 2 3 32 32 H 1.09000 * 109.47377 * 330.00145 * 1 2 3 33 33 H 1.08003 * 120.78653 * 0.25102 * 3 2 1 34 34 H 1.07999 * 120.41646 * 179.97438 * 4 3 2 35 35 H 1.07997 * 119.61999 * 179.97438 * 5 4 3 36 36 H 0.97000 * 120.00285 * 24.99528 * 10 8 7 37 37 H 1.09001 * 110.36873 * 274.74955 * 14 13 11 38 38 H 1.09009 * 110.36557 * 37.07303 * 14 13 11 39 39 H 1.09004 * 111.19050 * 279.19186 * 15 14 13 40 40 H 1.08995 * 110.90952 * 155.27849 * 15 14 13 41 41 H 0.96696 * 114.00088 * 185.02842 * 17 16 15 42 42 H 0.96995 * 120.00454 * 180.02562 * 21 20 18 43 43 H 1.09003 * 109.88355 * 300.43949 * 26 13 11 44 44 H 1.08999 * 109.88598 * 61.45034 * 26 13 11 45 45 H 1.08997 * 109.46723 * 300.00118 * 27 8 7 46 46 H 1.09010 * 109.47049 * 60.00011 * 28 27 8 47 47 H 1.08995 * 109.46919 * 179.97438 * 28 27 8 48 48 H 1.09004 * 109.47597 * 300.00228 * 28 27 8 49 49 H 1.08992 * 109.47537 * 60.00142 * 29 27 8 50 50 H 1.09000 * 109.46641 * 180.02562 * 29 27 8 51 51 H 1.08998 * 109.46885 * 299.99509 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1475 0.0005 5 6 4.2256 -0.0822 0.0016 6 7 3.5255 -1.1995 0.0026 7 6 2.2066 -1.1915 0.0021 8 6 1.4539 -2.4972 0.0027 9 1 0.4126 -2.3163 -0.2638 10 7 2.0565 -3.4087 -0.9730 11 6 1.3174 -4.3934 -1.5213 12 8 0.1506 -4.5254 -1.2058 13 7 1.8717 -5.2317 -2.4194 14 6 3.2662 -5.1817 -2.8948 15 6 3.5721 -6.6257 -3.3721 16 6 2.2167 -7.0349 -4.0068 17 8 2.1161 -6.5432 -5.3448 18 6 2.0392 -8.5310 -3.9760 19 1 2.8404 -9.1627 -3.6217 20 6 0.8540 -9.0936 -4.4000 21 7 -0.1218 -8.3244 -4.8311 22 14 0.6337 -10.9481 -4.3611 23 1 0.0679 -11.3520 -3.0489 24 1 -0.2920 -11.3596 -5.4470 25 1 1.9500 -11.6072 -4.5566 26 6 1.1841 -6.3438 -3.0915 27 6 1.5220 -3.1245 1.3966 28 6 0.8927 -2.1724 2.4156 29 6 0.7584 -4.4503 1.3970 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.6890 2.1424 0.0041 34 1 4.1735 2.0593 0.0001 35 1 5.3045 -0.1285 0.0016 36 1 2.9874 -3.3036 -1.2245 37 1 3.3600 -4.4783 -3.7222 38 1 3.9349 -4.9023 -2.0805 39 1 3.8216 -7.2739 -2.5320 40 1 4.3687 -6.6290 -4.1160 41 1 1.2579 -6.7051 -5.7599 42 1 -0.9558 -8.7201 -5.1291 43 1 0.8125 -7.0519 -2.3508 44 1 0.3550 -5.9614 -3.6870 45 1 2.5634 -3.3053 1.6630 46 1 -0.1487 -1.9915 2.1491 47 1 0.9409 -2.6195 3.4085 48 1 1.4371 -1.2281 2.4152 49 1 1.2071 -5.1283 0.6711 50 1 0.8066 -4.8969 2.3901 51 1 -0.2829 -4.2698 1.1304 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591959777.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:49 Heat of formation + Delta-G solvation = -67.252178 kcal Electronic energy + Delta-G solvation = -32109.861632 eV Core-core repulsion = 28008.098579 eV Total energy + Delta-G solvation = -4101.763053 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.93985 -40.98929 -39.32283 -37.47430 -36.03895 -34.70575 -34.22643 -34.17740 -32.82391 -31.55662 -29.60567 -28.60289 -28.01983 -27.52693 -26.40914 -24.30746 -23.59199 -22.80508 -21.50402 -21.08996 -20.94193 -19.29607 -18.92842 -17.87443 -17.55964 -17.24092 -16.89073 -16.70435 -16.24304 -15.93415 -15.76721 -15.67229 -15.07695 -14.89281 -14.77525 -14.59244 -14.29696 -13.93834 -13.88335 -13.81351 -13.61850 -13.51124 -13.38651 -13.34830 -13.25918 -12.99918 -12.83827 -12.52510 -12.50200 -12.35899 -12.30539 -12.28554 -12.09399 -11.87404 -11.59376 -11.19035 -11.15161 -10.65870 -10.64492 -10.46080 -10.28554 -10.09152 -9.71484 -9.38164 -8.25474 -6.41225 0.10372 0.36354 1.41165 1.43067 1.52865 1.69755 2.18042 2.38293 2.80443 3.01107 3.07873 3.17480 3.66347 3.79334 3.87093 3.94237 4.00724 4.04865 4.09917 4.16364 4.17430 4.24561 4.36496 4.47420 4.57192 4.58890 4.61817 4.71910 4.72512 4.73763 4.76816 4.83557 4.92993 4.98042 5.05217 5.10778 5.12110 5.15524 5.23026 5.25913 5.32227 5.34961 5.36790 5.44314 5.50504 5.58904 5.74874 5.80863 6.04188 6.19570 6.65234 7.03350 7.07582 7.28031 7.35514 7.60972 8.80729 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.002793 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.959138 B =10023.960646 C =10630.603341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.128 4.128 3 C -0.077 4.077 4 C -0.160 4.160 5 C 0.082 3.918 6 N -0.497 5.497 7 C 0.105 3.895 8 C 0.218 3.782 9 H 0.089 0.911 10 N -0.723 5.723 11 C 0.714 3.286 12 O -0.627 6.627 13 N -0.637 5.637 14 C 0.109 3.891 15 C -0.109 4.109 16 C 0.234 3.766 17 O -0.587 6.587 18 C -0.557 4.557 19 H 0.066 0.934 20 C 0.026 3.974 21 N -0.915 5.915 22 Si 0.963 3.037 23 H -0.279 1.279 24 H -0.281 1.281 25 H -0.265 1.265 26 C 0.147 3.853 27 C -0.092 4.092 28 C -0.136 4.136 29 C -0.129 4.129 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.164 0.836 34 H 0.168 0.832 35 H 0.178 0.822 36 H 0.405 0.595 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.375 0.625 42 H 0.270 0.730 43 H 0.029 0.971 44 H 0.027 0.973 45 H 0.070 0.930 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.058 0.942 49 H 0.026 0.974 50 H 0.059 0.941 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.110 21.104 12.655 25.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.131 4.131 3 C -0.103 4.103 4 C -0.180 4.180 5 C -0.075 4.075 6 N -0.206 5.206 7 C -0.032 4.032 8 C 0.112 3.888 9 H 0.107 0.893 10 N -0.379 5.379 11 C 0.417 3.583 12 O -0.508 6.508 13 N -0.374 5.374 14 C -0.013 4.013 15 C -0.147 4.147 16 C 0.194 3.806 17 O -0.395 6.395 18 C -0.595 4.595 19 H 0.084 0.916 20 C -0.175 4.175 21 N -0.554 5.554 22 Si 0.788 3.212 23 H -0.205 1.205 24 H -0.206 1.206 25 H -0.189 1.189 26 C 0.023 3.977 27 C -0.112 4.112 28 C -0.194 4.194 29 C -0.186 4.186 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.181 0.819 34 H 0.185 0.815 35 H 0.195 0.805 36 H 0.242 0.758 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.224 0.776 42 H 0.079 0.921 43 H 0.048 0.952 44 H 0.046 0.954 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.045 0.955 50 H 0.078 0.922 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.114 20.440 12.973 25.233 hybrid contribution -1.172 -0.715 -0.560 1.483 sum 5.942 19.725 12.413 24.051 Atomic orbital electron populations 1.20973 0.89578 1.04310 1.03072 1.20844 0.98283 0.93384 1.00580 1.21859 0.94636 0.98289 0.95529 1.22523 0.95337 1.00346 0.99757 1.23218 1.01386 0.87545 0.95366 1.67289 1.07507 1.33378 1.12460 1.20863 0.90277 0.93840 0.98265 1.19798 0.96168 0.84342 0.88474 0.89299 1.44977 1.14732 1.32013 1.46168 1.15585 0.84361 0.79647 0.78735 1.90849 1.17121 1.75750 1.67113 1.47896 1.13741 1.32345 1.43424 1.22366 0.81654 0.98236 0.99051 1.22739 0.97099 0.94615 1.00209 1.19703 0.90744 0.90859 0.79336 1.86095 1.40340 1.83127 1.29922 1.21806 1.00741 0.92360 1.44562 0.91552 1.25814 0.95205 1.02994 0.93517 1.69810 1.05498 1.36962 1.43095 0.85476 0.78245 0.79799 0.77644 1.20505 1.20641 1.18941 1.22287 0.95851 0.85398 0.94179 1.21433 1.00319 0.95598 0.93898 1.21793 1.00801 0.98435 0.98352 1.21735 1.00022 0.96608 1.00255 0.91136 0.91355 0.88523 0.81887 0.81492 0.80460 0.75825 0.91583 0.88995 0.89871 0.89231 0.77607 0.92114 0.95242 0.95406 0.91163 0.91890 0.91314 0.92345 0.95471 0.92174 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.98 9.24 71.23 0.66 -1.32 16 2 C -0.13 -2.37 5.34 -19.78 -0.11 -2.48 16 3 C -0.08 -1.02 9.86 22.47 0.22 -0.79 16 4 C -0.16 -1.88 10.11 22.36 0.23 -1.65 16 5 C 0.08 1.30 11.18 84.69 0.95 2.25 16 6 N -0.50 -11.15 9.57 -183.89 -1.76 -12.91 16 7 C 0.11 2.45 4.64 42.54 0.20 2.65 16 8 C 0.22 6.14 1.79 44.25 0.08 6.22 16 9 H 0.09 2.77 5.35 -2.39 -0.01 2.76 16 10 N -0.72 -23.76 4.91 -461.39 -2.26 -26.02 16 11 C 0.71 30.00 6.84 179.05 1.23 31.23 16 12 O -0.63 -30.41 13.79 -4.00 -0.06 -30.46 16 13 N -0.64 -27.59 3.32 -829.31 -2.76 -30.34 16 14 C 0.11 3.89 6.58 86.93 0.57 4.46 16 15 C -0.11 -4.33 6.24 32.06 0.20 -4.13 16 16 C 0.23 11.65 0.85 -10.35 -0.01 11.64 16 17 O -0.59 -30.37 13.07 -148.98 -1.95 -32.32 16 18 C -0.56 -29.84 8.13 25.60 0.21 -29.63 16 19 H 0.07 3.46 7.78 -2.91 -0.02 3.44 16 20 C 0.03 1.37 5.28 84.65 0.45 1.82 16 21 N -0.91 -50.77 10.96 21.45 0.24 -50.54 16 22 Si 0.96 42.89 29.54 68.60 2.03 44.91 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 C 0.15 7.57 5.23 86.73 0.45 8.02 16 27 C -0.09 -2.42 2.68 -10.79 -0.03 -2.45 16 28 C -0.14 -2.72 8.31 71.98 0.60 -2.12 16 29 C -0.13 -4.09 7.72 71.98 0.56 -3.53 16 30 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.07 1.26 4.49 -2.39 -0.01 1.24 16 32 H 0.10 1.01 8.10 -2.39 -0.02 0.99 16 33 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 34 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 35 H 0.18 1.83 8.06 -2.91 -0.02 1.80 16 36 H 0.41 12.20 6.52 -92.71 -0.60 11.60 16 37 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.09 2.64 7.29 -2.38 -0.02 2.62 16 39 H 0.08 3.19 8.05 -2.38 -0.02 3.17 16 40 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 41 H 0.37 20.20 7.45 -74.06 -0.55 19.65 16 42 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 43 H 0.03 1.68 7.82 -2.39 -0.02 1.66 16 44 H 0.03 1.59 7.92 -2.39 -0.02 1.57 16 45 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.06 1.20 6.88 -2.38 -0.02 1.19 16 47 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.06 1.08 6.86 -2.38 -0.02 1.07 16 49 H 0.03 1.03 5.77 -2.39 -0.01 1.01 16 50 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.05 1.63 7.53 -2.39 -0.02 1.62 16 Total: -1.00 -68.85 395.62 -0.27 -69.12 By element: Atomic # 1 Polarization: 48.57 SS G_CDS: -0.20 Total: 48.37 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: 6.45 Total: 20.19 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -6.55 Total: -119.81 kcal Atomic # 8 Polarization: -60.78 SS G_CDS: -2.00 Total: -62.78 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -68.85 -0.27 -69.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591959777.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.869 kcal (2) G-P(sol) polarization free energy of solvation -68.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds