Wall clock time and date at job start Wed Apr 1 2020 04:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35424 * 117.00348 * 2 1 4 4 N 1.32238 * 119.79865 * 0.26972 * 3 2 1 5 5 C 1.31874 * 121.80123 * 180.26328 * 4 3 2 6 6 C 1.50698 * 119.40920 * 179.72457 * 5 4 3 7 7 C 1.38364 * 121.18560 * 359.74935 * 5 4 3 8 8 C 1.38335 * 119.45489 * 359.97438 * 7 5 4 9 9 C 1.39980 * 118.35112 * 359.97438 * 8 7 5 10 10 C 1.47529 * 120.59697 * 180.02562 * 9 8 7 11 11 O 1.21593 * 119.99979 * 205.12491 * 10 9 8 12 12 N 1.34773 * 119.99677 * 25.13363 * 10 9 8 13 13 C 1.46500 * 120.00438 * 2.78648 * 12 10 9 14 14 C 1.46506 * 119.99584 * 182.79183 * 12 10 9 15 15 H 1.08992 * 109.50720 * 0.05465 * 14 12 10 16 16 C 1.52562 * 109.48815 * 239.99439 * 14 12 10 17 17 C 1.47090 * 114.21013 * 154.94432 * 16 14 12 18 18 C 1.54863 * 110.32189 * 62.88165 * 17 16 14 19 19 N 1.44578 * 109.60175 * 288.73645 * 18 17 16 20 20 C 1.36939 * 118.64524 * 270.70527 * 19 18 17 21 21 H 1.08010 * 119.99810 * 30.43113 * 20 19 18 22 22 C 1.38807 * 120.00242 * 210.43585 * 20 19 18 23 23 N 1.31615 * 119.99875 * 10.72834 * 22 20 19 24 24 Si 1.86804 * 119.99917 * 190.73393 * 22 20 19 25 25 H 1.48505 * 109.47241 * 59.99910 * 24 22 20 26 26 H 1.48501 * 109.47035 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47141 * 299.99454 * 24 22 20 28 28 C 1.47605 * 122.71337 * 90.71971 * 19 18 17 29 29 C 1.51042 * 109.42258 * 120.25262 * 14 12 10 30 30 H 1.08997 * 109.47173 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47363 * 300.00144 * 1 2 3 32 32 H 1.09000 * 109.47004 * 59.99834 * 1 2 3 33 33 H 1.09002 * 109.47376 * 270.02410 * 6 5 4 34 34 H 1.08995 * 109.47160 * 30.02508 * 6 5 4 35 35 H 1.09010 * 109.47444 * 150.02604 * 6 5 4 36 36 H 1.07997 * 120.26809 * 179.97438 * 7 5 4 37 37 H 1.08004 * 120.81870 * 180.02562 * 8 7 5 38 38 H 1.09000 * 109.47117 * 263.72863 * 13 12 10 39 39 H 1.09001 * 109.46528 * 23.72520 * 13 12 10 40 40 H 1.08994 * 109.46892 * 143.72449 * 13 12 10 41 41 H 1.09004 * 108.51299 * 33.76899 * 16 14 12 42 42 H 1.08998 * 108.51887 * 276.12555 * 16 14 12 43 43 H 1.08997 * 109.33323 * 183.14574 * 17 16 14 44 44 H 1.08997 * 109.33022 * 302.79904 * 17 16 14 45 45 H 1.09003 * 109.44910 * 48.77591 * 18 17 16 46 46 H 1.09005 * 109.45136 * 168.69869 * 18 17 16 47 47 H 0.96999 * 119.99761 * 180.02562 * 23 22 20 48 48 H 1.09006 * 108.94548 * 78.56032 * 28 19 18 49 49 H 1.09003 * 108.94890 * 197.18227 * 28 19 18 50 50 H 1.08995 * 109.44244 * 91.77670 * 29 14 12 51 51 H 1.08995 * 109.41639 * 332.08431 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2066 0.0000 4 7 1.3198 2.3131 0.0054 5 6 1.8772 3.5083 0.0005 6 6 1.0001 4.7338 0.0007 7 6 3.2527 3.6574 -0.0055 8 6 4.0588 2.5332 -0.0057 9 6 3.4450 1.2751 0.0007 10 6 4.2570 0.0434 0.0013 11 8 3.7939 -0.9903 -0.4407 12 7 5.5121 0.0640 0.4920 13 6 6.0485 1.2937 1.0804 14 6 6.3400 -1.1434 0.4368 15 1 5.7764 -1.9500 -0.0320 16 6 6.7356 -1.5543 1.8518 17 6 7.0423 -2.9852 2.0009 18 6 8.2681 -3.3657 1.1344 19 7 7.9002 -3.3416 -0.2635 20 6 7.4045 -4.4847 -0.8317 21 1 6.8439 -5.1866 -0.2319 22 6 7.6225 -4.7415 -2.1782 23 7 8.4752 -4.0054 -2.8589 24 14 6.7055 -6.1318 -3.0244 25 1 5.2436 -5.8852 -2.9382 26 1 7.1128 -6.1973 -4.4509 27 1 7.0308 -7.4177 -2.3568 28 6 8.0372 -2.1358 -1.1038 29 6 7.5869 -0.8612 -0.3675 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 0.7845 5.0266 -1.0268 34 1 0.0670 4.5127 0.5189 35 1 1.5144 5.5487 0.5104 36 1 3.6934 4.6434 -0.0099 37 1 5.1350 2.6240 -0.0099 38 1 6.6318 1.8302 0.3320 39 1 5.2257 1.9231 1.4195 40 1 6.6870 1.0427 1.9273 41 1 5.9172 -1.3036 2.5266 42 1 7.6137 -0.9797 2.1464 43 1 7.2591 -3.2006 3.0471 44 1 6.1819 -3.5736 1.6822 45 1 9.0726 -2.6515 1.3104 46 1 8.6063 -4.3664 1.4035 47 1 8.6272 -4.1846 -3.8000 48 1 9.0814 -2.0253 -1.3966 49 1 7.4310 -2.2591 -2.0013 50 1 8.3819 -0.5294 0.3002 51 1 7.3786 -0.0775 -1.0958 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948837355.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:49 Heat of formation + Delta-G solvation = 13.108767 kcal Electronic energy + Delta-G solvation = -32161.148557 eV Core-core repulsion = 28062.870215 eV Total energy + Delta-G solvation = -4098.278341 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.19518 -39.55023 -38.18332 -37.49269 -35.33388 -33.77735 -32.74153 -31.98944 -31.04570 -30.44113 -28.67084 -27.13268 -27.10893 -25.79681 -24.23882 -23.29343 -23.00737 -22.75112 -20.40880 -19.50751 -18.93592 -18.19699 -17.21326 -16.88688 -16.51677 -16.26957 -15.83441 -15.25981 -14.98282 -14.71996 -14.35157 -14.34400 -14.30914 -14.06491 -13.73197 -13.41422 -13.13839 -12.92262 -12.85327 -12.70375 -12.63977 -12.52341 -12.31529 -11.93024 -11.83821 -11.67484 -11.33916 -11.14501 -11.00235 -10.75095 -10.67429 -10.33784 -10.24812 -10.09825 -10.01627 -9.91059 -9.87758 -9.66034 -9.51454 -9.29777 -8.62338 -8.33125 -8.26338 -6.51692 -5.68349 -3.16640 0.56548 1.04899 2.89941 3.00033 3.20516 3.47388 3.51834 3.56100 3.66602 3.88310 4.39480 4.57659 4.60008 4.73743 4.89170 5.06202 5.09109 5.16703 5.20675 5.22265 5.23879 5.28248 5.31157 5.43605 5.52090 5.58302 5.60183 5.60474 5.63602 5.66752 5.79532 5.87383 6.02653 6.13823 6.16095 6.26162 6.33621 6.54501 6.60299 6.69640 6.74999 6.82237 6.94324 7.06634 7.12063 7.16557 7.49231 7.56340 7.69902 7.78988 7.92618 8.50272 8.59971 9.34949 10.00104 10.46085 11.39066 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.003159 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.888190 B = 8861.717359 C = 9765.375384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.274 6.274 3 C 0.375 3.625 4 N -0.548 5.548 5 C 0.186 3.814 6 C -0.107 4.107 7 C -0.224 4.224 8 C -0.023 4.023 9 C -0.208 4.208 10 C 0.559 3.441 11 O -0.508 6.508 12 N -0.607 5.607 13 C 0.062 3.938 14 C 0.151 3.849 15 H 0.118 0.882 16 C -0.106 4.106 17 C -0.146 4.146 18 C 0.158 3.842 19 N -0.590 5.590 20 C -0.257 4.257 21 H 0.063 0.937 22 C 0.008 3.992 23 N -0.907 5.907 24 Si 0.901 3.099 25 H -0.282 1.282 26 H -0.291 1.291 27 H -0.283 1.283 28 C 0.184 3.816 29 C -0.147 4.147 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.142 0.858 37 H 0.164 0.836 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.049 0.951 43 H 0.049 0.951 44 H 0.062 0.938 45 H 0.031 0.969 46 H 0.046 0.954 47 H 0.253 0.747 48 H 0.028 0.972 49 H 0.073 0.927 50 H 0.048 0.952 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.496 20.098 9.269 24.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.178 6.178 3 C 0.195 3.805 4 N -0.273 5.273 5 C 0.048 3.952 6 C -0.164 4.164 7 C -0.245 4.245 8 C -0.048 4.048 9 C -0.214 4.214 10 C 0.346 3.654 11 O -0.383 6.383 12 N -0.340 5.340 13 C -0.081 4.081 14 C 0.050 3.950 15 H 0.135 0.865 16 C -0.144 4.144 17 C -0.187 4.187 18 C 0.030 3.970 19 N -0.312 5.312 20 C -0.387 4.387 21 H 0.080 0.920 22 C -0.190 4.190 23 N -0.551 5.551 24 Si 0.730 3.270 25 H -0.208 1.208 26 H -0.217 1.217 27 H -0.209 1.209 28 C 0.058 3.942 29 C -0.187 4.187 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.160 0.840 37 H 0.181 0.819 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.049 0.951 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.046 0.954 49 H 0.092 0.908 50 H 0.067 0.933 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.476 19.138 8.846 24.004 hybrid contribution 0.211 -0.332 -0.467 0.610 sum -11.265 18.806 8.379 23.469 Atomic orbital electron populations 1.22933 0.77479 1.03341 1.02084 1.86517 1.22427 1.23111 1.85700 1.19781 0.88102 0.84851 0.87770 1.67246 1.40325 0.98197 1.21550 1.21148 0.92225 0.91914 0.89877 1.20801 0.99329 0.92802 1.03484 1.21742 0.93809 0.99892 1.09022 1.22412 1.02063 0.90304 0.90046 1.20050 0.91596 0.95436 1.14368 1.17810 0.81260 0.87484 0.78815 1.90867 1.70325 1.31889 1.45241 1.48006 1.13450 1.12703 1.59872 1.22319 0.99581 0.87606 0.98562 1.20735 0.91976 0.86107 0.96223 0.86454 1.20624 0.99770 0.98081 0.95917 1.21461 1.02579 0.95426 0.99235 1.20701 0.92545 0.98503 0.85259 1.43615 1.74345 1.08110 1.05128 1.19127 1.27244 0.98853 0.93438 0.91969 1.25111 0.97483 0.98208 0.98230 1.70002 1.35264 1.41324 1.08541 0.86398 0.79965 0.82143 0.78450 1.20825 1.21706 1.20929 1.20934 0.98906 0.81705 0.92627 1.22479 0.95809 1.01228 0.99219 0.88329 0.92408 0.92274 0.89884 0.90310 0.90181 0.84042 0.81899 0.92246 0.90387 0.91074 0.93681 0.93219 0.93223 0.91897 0.95086 0.93588 0.93718 0.95376 0.90837 0.93319 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.38 101.05 1.05 1.48 16 2 O -0.27 -4.49 8.87 -38.00 -0.34 -4.83 16 3 C 0.38 5.72 7.48 -16.61 -0.12 5.60 16 4 N -0.55 -7.02 9.11 -9.21 -0.08 -7.11 16 5 C 0.19 1.84 6.78 -82.53 -0.56 1.28 16 6 C -0.11 -0.65 10.16 36.00 0.37 -0.28 16 7 C -0.22 -1.96 9.71 -39.50 -0.38 -2.35 16 8 C -0.02 -0.25 7.62 -38.89 -0.30 -0.54 16 9 C -0.21 -3.10 5.54 -104.69 -0.58 -3.68 16 10 C 0.56 10.22 7.44 -12.47 -0.09 10.13 16 11 O -0.51 -11.70 14.93 -14.75 -0.22 -11.92 16 12 N -0.61 -9.74 2.60 -176.56 -0.46 -10.20 16 13 C 0.06 0.67 8.10 59.85 0.48 1.16 16 14 C 0.15 2.85 2.14 -69.14 -0.15 2.70 16 15 H 0.12 2.82 6.24 -51.93 -0.32 2.49 16 16 C -0.11 -1.78 3.92 -29.79 -0.12 -1.90 16 17 C -0.15 -2.69 5.73 -28.58 -0.16 -2.85 16 18 C 0.16 3.33 5.65 -4.09 -0.02 3.30 16 19 N -0.59 -14.84 2.26 -172.08 -0.39 -15.22 16 20 C -0.26 -7.20 9.41 -15.06 -0.14 -7.35 16 21 H 0.06 1.74 7.85 -52.48 -0.41 1.33 16 22 C 0.01 0.23 4.97 -17.43 -0.09 0.15 16 23 N -0.91 -26.81 10.98 55.49 0.61 -26.20 16 24 Si 0.90 22.77 29.57 -169.99 -5.03 17.74 16 25 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 28 C 0.18 4.45 4.64 -2.95 -0.01 4.44 16 29 C -0.15 -2.79 4.87 -27.22 -0.13 -2.93 16 30 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 32 H 0.06 0.64 8.11 -51.93 -0.42 0.22 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.31 8.07 -51.92 -0.42 -0.11 16 36 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.16 1.37 4.53 -52.48 -0.24 1.14 16 38 H 0.06 0.54 7.30 -51.93 -0.38 0.16 16 39 H 0.08 0.72 4.86 -51.93 -0.25 0.46 16 40 H 0.07 0.71 7.07 -51.93 -0.37 0.35 16 41 H 0.04 0.73 8.04 -51.93 -0.42 0.31 16 42 H 0.05 0.75 7.02 -51.93 -0.36 0.39 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.03 0.61 8.06 -51.93 -0.42 0.19 16 46 H 0.05 0.98 7.99 -51.93 -0.41 0.57 16 47 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.03 0.73 7.99 -51.93 -0.41 0.31 16 49 H 0.07 2.04 6.48 -51.93 -0.34 1.70 16 50 H 0.05 0.83 7.31 -51.93 -0.38 0.45 16 51 H 0.06 1.01 7.99 -51.93 -0.41 0.60 16 LS Contribution 394.30 15.07 5.94 5.94 Total: -1.00 -34.95 394.30 -8.99 -43.94 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -8.07 Total: -0.49 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -0.96 Total: 8.35 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -0.32 Total: -58.74 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.56 Total: -16.75 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.03 Total: 17.74 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.95 -8.99 -43.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948837355.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.051 kcal (2) G-P(sol) polarization free energy of solvation -34.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds