Wall clock time and date at job start Wed Apr 1 2020 04:51:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.35424 * 117.00348 * 2 1
4 4 N 1.32238 * 119.79865 * 0.26972 * 3 2 1
5 5 C 1.31874 * 121.80123 * 180.26328 * 4 3 2
6 6 C 1.50698 * 119.40920 * 179.72457 * 5 4 3
7 7 C 1.38364 * 121.18560 * 359.74935 * 5 4 3
8 8 C 1.38335 * 119.45489 * 359.97438 * 7 5 4
9 9 C 1.39980 * 118.35112 * 359.97438 * 8 7 5
10 10 C 1.47529 * 120.59697 * 180.02562 * 9 8 7
11 11 O 1.21593 * 119.99979 * 205.12491 * 10 9 8
12 12 N 1.34773 * 119.99677 * 25.13363 * 10 9 8
13 13 C 1.46500 * 120.00438 * 2.78648 * 12 10 9
14 14 C 1.46506 * 119.99584 * 182.79183 * 12 10 9
15 15 H 1.08992 * 109.50720 * 0.05465 * 14 12 10
16 16 C 1.52562 * 109.48815 * 239.99439 * 14 12 10
17 17 C 1.47090 * 114.21013 * 154.94432 * 16 14 12
18 18 C 1.54863 * 110.32189 * 62.88165 * 17 16 14
19 19 N 1.44578 * 109.60175 * 288.73645 * 18 17 16
20 20 C 1.36939 * 118.64524 * 270.70527 * 19 18 17
21 21 H 1.08010 * 119.99810 * 30.43113 * 20 19 18
22 22 C 1.38807 * 120.00242 * 210.43585 * 20 19 18
23 23 N 1.31615 * 119.99875 * 10.72834 * 22 20 19
24 24 Si 1.86804 * 119.99917 * 190.73393 * 22 20 19
25 25 H 1.48505 * 109.47241 * 59.99910 * 24 22 20
26 26 H 1.48501 * 109.47035 * 179.97438 * 24 22 20
27 27 H 1.48499 * 109.47141 * 299.99454 * 24 22 20
28 28 C 1.47605 * 122.71337 * 90.71971 * 19 18 17
29 29 C 1.51042 * 109.42258 * 120.25262 * 14 12 10
30 30 H 1.08997 * 109.47173 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.47363 * 300.00144 * 1 2 3
32 32 H 1.09000 * 109.47004 * 59.99834 * 1 2 3
33 33 H 1.09002 * 109.47376 * 270.02410 * 6 5 4
34 34 H 1.08995 * 109.47160 * 30.02508 * 6 5 4
35 35 H 1.09010 * 109.47444 * 150.02604 * 6 5 4
36 36 H 1.07997 * 120.26809 * 179.97438 * 7 5 4
37 37 H 1.08004 * 120.81870 * 180.02562 * 8 7 5
38 38 H 1.09000 * 109.47117 * 263.72863 * 13 12 10
39 39 H 1.09001 * 109.46528 * 23.72520 * 13 12 10
40 40 H 1.08994 * 109.46892 * 143.72449 * 13 12 10
41 41 H 1.09004 * 108.51299 * 33.76899 * 16 14 12
42 42 H 1.08998 * 108.51887 * 276.12555 * 16 14 12
43 43 H 1.08997 * 109.33323 * 183.14574 * 17 16 14
44 44 H 1.08997 * 109.33022 * 302.79904 * 17 16 14
45 45 H 1.09003 * 109.44910 * 48.77591 * 18 17 16
46 46 H 1.09005 * 109.45136 * 168.69869 * 18 17 16
47 47 H 0.96999 * 119.99761 * 180.02562 * 23 22 20
48 48 H 1.09006 * 108.94548 * 78.56032 * 28 19 18
49 49 H 1.09003 * 108.94890 * 197.18227 * 28 19 18
50 50 H 1.08995 * 109.44244 * 91.77670 * 29 14 12
51 51 H 1.08995 * 109.41639 * 332.08431 * 29 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0439 1.2066 0.0000
4 7 1.3198 2.3131 0.0054
5 6 1.8772 3.5083 0.0005
6 6 1.0001 4.7338 0.0007
7 6 3.2527 3.6574 -0.0055
8 6 4.0588 2.5332 -0.0057
9 6 3.4450 1.2751 0.0007
10 6 4.2570 0.0434 0.0013
11 8 3.7939 -0.9903 -0.4407
12 7 5.5121 0.0640 0.4920
13 6 6.0485 1.2937 1.0804
14 6 6.3400 -1.1434 0.4368
15 1 5.7764 -1.9500 -0.0320
16 6 6.7356 -1.5543 1.8518
17 6 7.0423 -2.9852 2.0009
18 6 8.2681 -3.3657 1.1344
19 7 7.9002 -3.3416 -0.2635
20 6 7.4045 -4.4847 -0.8317
21 1 6.8439 -5.1866 -0.2319
22 6 7.6225 -4.7415 -2.1782
23 7 8.4752 -4.0054 -2.8589
24 14 6.7055 -6.1318 -3.0244
25 1 5.2436 -5.8852 -2.9382
26 1 7.1128 -6.1973 -4.4509
27 1 7.0308 -7.4177 -2.3568
28 6 8.0372 -2.1358 -1.1038
29 6 7.5869 -0.8612 -0.3675
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3634 0.5138 0.8899
32 1 -0.3633 0.5139 -0.8900
33 1 0.7845 5.0266 -1.0268
34 1 0.0670 4.5127 0.5189
35 1 1.5144 5.5487 0.5104
36 1 3.6934 4.6434 -0.0099
37 1 5.1350 2.6240 -0.0099
38 1 6.6318 1.8302 0.3320
39 1 5.2257 1.9231 1.4195
40 1 6.6870 1.0427 1.9273
41 1 5.9172 -1.3036 2.5266
42 1 7.6137 -0.9797 2.1464
43 1 7.2591 -3.2006 3.0471
44 1 6.1819 -3.5736 1.6822
45 1 9.0726 -2.6515 1.3104
46 1 8.6063 -4.3664 1.4035
47 1 8.6272 -4.1846 -3.8000
48 1 9.0814 -2.0253 -1.3966
49 1 7.4310 -2.2591 -2.0013
50 1 8.3819 -0.5294 0.3002
51 1 7.3786 -0.0775 -1.0958
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000948837355.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:51:48
Heat of formation + Delta-G solvation = -10.171699 kcal
Electronic energy + Delta-G solvation = -32162.158073 eV
Core-core repulsion = 28062.870215 eV
Total energy + Delta-G solvation = -4099.287858 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-42.19858 -40.82959 -39.17076 -39.07642 -36.83408 -35.20500 -34.11266 -32.81999
-32.71941 -32.18915 -29.48090 -28.33811 -28.09923 -27.42879 -25.74544 -25.09003
-24.09269 -23.64138 -21.68789 -21.24510 -20.39657 -19.18033 -18.58842 -18.26952
-17.95640 -17.39817 -17.10572 -16.73008 -16.32306 -16.16206 -15.71842 -15.60685
-15.26986 -15.18057 -15.02300 -14.78640 -14.67330 -14.23698 -14.06289 -13.76743
-13.65033 -13.58569 -13.36076 -13.10872 -13.05932 -13.00734 -12.77583 -12.75910
-12.51942 -12.42828 -12.10244 -12.05191 -11.99834 -11.80302 -11.51623 -11.38057
-11.34807 -11.13917 -10.88291 -10.49295 -10.46464 -9.70057 -9.41754 -8.58563
-7.86552 -5.36256 -0.34754 0.20666 1.38893 1.43908 1.49021 1.78167
1.94952 2.07091 2.48781 2.68468 3.07485 3.27953 3.55627 3.68235
3.70228 3.86647 3.89400 4.07011 4.15398 4.24762 4.31372 4.32232
4.33736 4.40965 4.42956 4.48828 4.61043 4.62706 4.69114 4.70999
4.78288 4.82022 4.88137 4.93811 4.96156 4.99106 5.05514 5.14358
5.16372 5.20789 5.23999 5.37459 5.48750 5.54127 5.57891 5.65437
5.71951 5.78454 6.17017 6.42578 6.42955 6.73965 7.19826 7.20765
7.96951 8.34123 9.17443
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013459 B = 0.003159 C = 0.002867
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2079.888190 B = 8861.717359 C = 9765.375384
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.036 3.964
2 O -0.313 6.313
3 C 0.350 3.650
4 N -0.559 5.559
5 C 0.179 3.821
6 C -0.104 4.104
7 C -0.206 4.206
8 C -0.015 4.015
9 C -0.238 4.238
10 C 0.551 3.449
11 O -0.578 6.578
12 N -0.603 5.603
13 C 0.051 3.949
14 C 0.158 3.842
15 H 0.055 0.945
16 C -0.100 4.100
17 C -0.134 4.134
18 C 0.153 3.847
19 N -0.605 5.605
20 C -0.263 4.263
21 H 0.055 0.945
22 C -0.044 4.044
23 N -0.932 5.932
24 Si 0.956 3.044
25 H -0.291 1.291
26 H -0.289 1.289
27 H -0.270 1.270
28 C 0.194 3.806
29 C -0.129 4.129
30 H 0.108 0.892
31 H 0.068 0.932
32 H 0.061 0.939
33 H 0.094 0.906
34 H 0.075 0.925
35 H 0.112 0.888
36 H 0.190 0.810
37 H 0.190 0.810
38 H 0.086 0.914
39 H 0.098 0.902
40 H 0.089 0.911
41 H 0.055 0.945
42 H 0.085 0.915
43 H 0.085 0.915
44 H 0.026 0.974
45 H 0.055 0.945
46 H 0.037 0.963
47 H 0.248 0.752
48 H 0.006 0.994
49 H 0.024 0.976
50 H 0.083 0.917
51 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.909 24.281 11.413 28.601
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 O -0.219 6.219
3 C 0.171 3.829
4 N -0.285 5.285
5 C 0.042 3.958
6 C -0.161 4.161
7 C -0.226 4.226
8 C -0.040 4.040
9 C -0.245 4.245
10 C 0.340 3.660
11 O -0.458 6.458
12 N -0.334 5.334
13 C -0.089 4.089
14 C 0.055 3.945
15 H 0.073 0.927
16 C -0.138 4.138
17 C -0.175 4.175
18 C 0.027 3.973
19 N -0.327 5.327
20 C -0.394 4.394
21 H 0.072 0.928
22 C -0.240 4.240
23 N -0.578 5.578
24 Si 0.784 3.216
25 H -0.218 1.218
26 H -0.214 1.214
27 H -0.195 1.195
28 C 0.069 3.931
29 C -0.168 4.168
30 H 0.126 0.874
31 H 0.087 0.913
32 H 0.080 0.920
33 H 0.113 0.887
34 H 0.094 0.906
35 H 0.130 0.870
36 H 0.207 0.793
37 H 0.207 0.793
38 H 0.104 0.896
39 H 0.116 0.884
40 H 0.107 0.893
41 H 0.073 0.927
42 H 0.103 0.897
43 H 0.103 0.897
44 H 0.044 0.956
45 H 0.073 0.927
46 H 0.055 0.945
47 H 0.057 0.943
48 H 0.025 0.975
49 H 0.043 0.957
50 H 0.101 0.899
51 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -10.866 23.368 11.047 28.039
hybrid contribution -0.028 -1.501 -1.085 1.852
sum -10.894 21.868 9.962 26.384
Atomic orbital electron populations
1.23073 0.75928 1.04209 1.02669 1.86465 1.24354 1.24842 1.86219
1.20024 0.88593 0.85158 0.89158 1.67319 1.40468 0.98616 1.22120
1.22026 0.93870 0.91973 0.87939 1.20949 0.98883 0.91696 1.04581
1.22255 0.93019 1.01206 1.06110 1.22732 1.03518 0.88953 0.88794
1.19948 0.91256 0.95480 1.17782 1.18461 0.81879 0.87916 0.77734
1.90821 1.71904 1.34639 1.48429 1.47993 1.12563 1.13554 1.59321
1.22737 1.00827 0.85652 0.99714 1.20343 0.91096 0.86035 0.97073
0.92704 1.20557 1.01523 0.97256 0.94512 1.21323 0.99622 0.96100
1.00422 1.20896 0.94318 0.98903 0.83226 1.43803 1.74534 1.07598
1.06763 1.19356 1.26612 0.99589 0.93811 0.92774 1.25759 0.98672
1.00624 0.98936 1.70142 1.36649 1.42687 1.08286 0.85523 0.78103
0.80332 0.77612 1.21834 1.21442 1.19535 1.20645 0.96621 0.83946
0.91931 1.22240 0.96753 0.98287 0.99532 0.87419 0.91349 0.91998
0.88718 0.90640 0.86957 0.79329 0.79323 0.89582 0.88371 0.89285
0.92676 0.89694 0.89657 0.95556 0.92701 0.94458 0.94270 0.97546
0.95719 0.89853 0.91726
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.88 10.38 113.37 1.18 2.06 16
2 O -0.31 -11.08 8.87 -68.03 -0.60 -11.69 16
3 C 0.35 10.95 7.48 85.13 0.64 11.58 16
4 N -0.56 -13.88 9.11 -296.06 -2.70 -16.58 16
5 C 0.18 2.99 6.78 42.58 0.29 3.28 16
6 C -0.10 -0.83 10.16 71.24 0.72 -0.11 16
7 C -0.21 -2.65 9.71 22.32 0.22 -2.43 16
8 C -0.02 -0.28 7.62 22.72 0.17 -0.10 16
9 C -0.24 -7.06 5.54 -19.91 -0.11 -7.17 16
10 C 0.55 20.87 7.44 86.69 0.65 21.52 16
11 O -0.58 -28.98 14.93 15.15 0.23 -28.75 16
12 N -0.60 -18.84 2.60 -830.78 -2.16 -21.00 16
13 C 0.05 0.90 8.10 127.77 1.04 1.94 16
14 C 0.16 5.94 2.14 44.21 0.09 6.04 16
15 H 0.05 2.81 6.24 -2.39 -0.01 2.80 16
16 C -0.10 -3.17 3.92 28.61 0.11 -3.06 16
17 C -0.13 -4.81 5.73 29.39 0.17 -4.64 16
18 C 0.15 6.37 5.65 87.37 0.49 6.86 16
19 N -0.60 -31.38 2.26 -698.35 -1.58 -32.96 16
20 C -0.26 -15.46 9.41 84.03 0.79 -14.67 16
21 H 0.05 3.20 7.85 -2.91 -0.02 3.17 16
22 C -0.04 -2.65 4.97 84.86 0.42 -2.23 16
23 N -0.93 -57.61 10.98 21.65 0.24 -57.37 16
24 Si 0.96 48.91 29.57 68.60 2.03 50.94 16
25 H -0.29 -15.22 7.11 99.48 0.71 -14.52 16
26 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16
27 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16
28 C 0.19 9.74 4.64 86.49 0.40 10.14 16
29 C -0.13 -4.76 4.87 30.27 0.15 -4.61 16
30 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16
31 H 0.07 1.47 8.10 -2.39 -0.02 1.45 16
32 H 0.06 1.43 8.11 -2.39 -0.02 1.41 16
33 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16
34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16
35 H 0.11 0.22 8.07 -2.38 -0.02 0.20 16
36 H 0.19 0.67 8.06 -2.91 -0.02 0.64 16
37 H 0.19 2.28 4.53 -2.91 -0.01 2.27 16
38 H 0.09 1.11 7.30 -2.39 -0.02 1.09 16
39 H 0.10 1.37 4.86 -2.39 -0.01 1.36 16
40 H 0.09 1.30 7.07 -2.39 -0.02 1.29 16
41 H 0.05 1.66 8.04 -2.38 -0.02 1.64 16
42 H 0.08 2.14 7.02 -2.39 -0.02 2.12 16
43 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16
44 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16
45 H 0.05 2.02 8.06 -2.39 -0.02 2.01 16
46 H 0.04 1.59 7.99 -2.38 -0.02 1.57 16
47 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16
48 H 0.01 0.35 7.99 -2.38 -0.02 0.33 16
49 H 0.02 1.45 6.48 -2.39 -0.02 1.43 16
50 H 0.08 2.54 7.31 -2.39 -0.02 2.52 16
51 H 0.06 2.26 7.99 -2.39 -0.02 2.25 16
Total: -1.00 -86.75 394.30 3.81 -82.94
By element:
Atomic # 1 Polarization: 9.13 SS G_CDS: 0.93 Total: 10.06 kcal
Atomic # 6 Polarization: 16.98 SS G_CDS: 7.42 Total: 24.40 kcal
Atomic # 7 Polarization: -121.71 SS G_CDS: -6.19 Total: -127.91 kcal
Atomic # 8 Polarization: -40.06 SS G_CDS: -0.38 Total: -40.44 kcal
Atomic # 14 Polarization: 48.91 SS G_CDS: 2.03 Total: 50.94 kcal
Total: -86.75 3.81 -82.94 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000948837355.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.773 kcal
(2) G-P(sol) polarization free energy of solvation -86.751 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.977 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.945 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.172 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds