Wall clock time and date at job start Wed Apr 1 2020 04:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35424 * 117.00348 * 2 1 4 4 N 1.32238 * 119.79865 * 0.26972 * 3 2 1 5 5 C 1.31874 * 121.80123 * 180.26328 * 4 3 2 6 6 C 1.50698 * 119.40920 * 179.72457 * 5 4 3 7 7 C 1.38364 * 121.18560 * 359.74935 * 5 4 3 8 8 C 1.38335 * 119.45489 * 359.97438 * 7 5 4 9 9 C 1.39980 * 118.35112 * 359.97438 * 8 7 5 10 10 C 1.47529 * 120.59697 * 180.02562 * 9 8 7 11 11 O 1.21593 * 119.99979 * 205.12491 * 10 9 8 12 12 N 1.34773 * 119.99677 * 25.13363 * 10 9 8 13 13 C 1.46500 * 120.00438 * 2.78648 * 12 10 9 14 14 C 1.46506 * 119.99584 * 182.79183 * 12 10 9 15 15 H 1.08992 * 109.50720 * 0.05465 * 14 12 10 16 16 C 1.52562 * 109.48815 * 239.99439 * 14 12 10 17 17 C 1.47090 * 114.21013 * 154.94432 * 16 14 12 18 18 C 1.54863 * 110.32189 * 62.88165 * 17 16 14 19 19 N 1.44578 * 109.60175 * 288.73645 * 18 17 16 20 20 C 1.36939 * 118.64524 * 270.70527 * 19 18 17 21 21 H 1.08010 * 119.99810 * 30.43113 * 20 19 18 22 22 C 1.38807 * 120.00242 * 210.43585 * 20 19 18 23 23 N 1.31615 * 119.99875 * 10.72834 * 22 20 19 24 24 Si 1.86804 * 119.99917 * 190.73393 * 22 20 19 25 25 H 1.48505 * 109.47241 * 59.99910 * 24 22 20 26 26 H 1.48501 * 109.47035 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47141 * 299.99454 * 24 22 20 28 28 C 1.47605 * 122.71337 * 90.71971 * 19 18 17 29 29 C 1.51042 * 109.42258 * 120.25262 * 14 12 10 30 30 H 1.08997 * 109.47173 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47363 * 300.00144 * 1 2 3 32 32 H 1.09000 * 109.47004 * 59.99834 * 1 2 3 33 33 H 1.09002 * 109.47376 * 270.02410 * 6 5 4 34 34 H 1.08995 * 109.47160 * 30.02508 * 6 5 4 35 35 H 1.09010 * 109.47444 * 150.02604 * 6 5 4 36 36 H 1.07997 * 120.26809 * 179.97438 * 7 5 4 37 37 H 1.08004 * 120.81870 * 180.02562 * 8 7 5 38 38 H 1.09000 * 109.47117 * 263.72863 * 13 12 10 39 39 H 1.09001 * 109.46528 * 23.72520 * 13 12 10 40 40 H 1.08994 * 109.46892 * 143.72449 * 13 12 10 41 41 H 1.09004 * 108.51299 * 33.76899 * 16 14 12 42 42 H 1.08998 * 108.51887 * 276.12555 * 16 14 12 43 43 H 1.08997 * 109.33323 * 183.14574 * 17 16 14 44 44 H 1.08997 * 109.33022 * 302.79904 * 17 16 14 45 45 H 1.09003 * 109.44910 * 48.77591 * 18 17 16 46 46 H 1.09005 * 109.45136 * 168.69869 * 18 17 16 47 47 H 0.96999 * 119.99761 * 180.02562 * 23 22 20 48 48 H 1.09006 * 108.94548 * 78.56032 * 28 19 18 49 49 H 1.09003 * 108.94890 * 197.18227 * 28 19 18 50 50 H 1.08995 * 109.44244 * 91.77670 * 29 14 12 51 51 H 1.08995 * 109.41639 * 332.08431 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2066 0.0000 4 7 1.3198 2.3131 0.0054 5 6 1.8772 3.5083 0.0005 6 6 1.0001 4.7338 0.0007 7 6 3.2527 3.6574 -0.0055 8 6 4.0588 2.5332 -0.0057 9 6 3.4450 1.2751 0.0007 10 6 4.2570 0.0434 0.0013 11 8 3.7939 -0.9903 -0.4407 12 7 5.5121 0.0640 0.4920 13 6 6.0485 1.2937 1.0804 14 6 6.3400 -1.1434 0.4368 15 1 5.7764 -1.9500 -0.0320 16 6 6.7356 -1.5543 1.8518 17 6 7.0423 -2.9852 2.0009 18 6 8.2681 -3.3657 1.1344 19 7 7.9002 -3.3416 -0.2635 20 6 7.4045 -4.4847 -0.8317 21 1 6.8439 -5.1866 -0.2319 22 6 7.6225 -4.7415 -2.1782 23 7 8.4752 -4.0054 -2.8589 24 14 6.7055 -6.1318 -3.0244 25 1 5.2436 -5.8852 -2.9382 26 1 7.1128 -6.1973 -4.4509 27 1 7.0308 -7.4177 -2.3568 28 6 8.0372 -2.1358 -1.1038 29 6 7.5869 -0.8612 -0.3675 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 0.7845 5.0266 -1.0268 34 1 0.0670 4.5127 0.5189 35 1 1.5144 5.5487 0.5104 36 1 3.6934 4.6434 -0.0099 37 1 5.1350 2.6240 -0.0099 38 1 6.6318 1.8302 0.3320 39 1 5.2257 1.9231 1.4195 40 1 6.6870 1.0427 1.9273 41 1 5.9172 -1.3036 2.5266 42 1 7.6137 -0.9797 2.1464 43 1 7.2591 -3.2006 3.0471 44 1 6.1819 -3.5736 1.6822 45 1 9.0726 -2.6515 1.3104 46 1 8.6063 -4.3664 1.4035 47 1 8.6272 -4.1846 -3.8000 48 1 9.0814 -2.0253 -1.3966 49 1 7.4310 -2.2591 -2.0013 50 1 8.3819 -0.5294 0.3002 51 1 7.3786 -0.0775 -1.0958 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948837355.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:48 Heat of formation + Delta-G solvation = -10.171699 kcal Electronic energy + Delta-G solvation = -32162.158073 eV Core-core repulsion = 28062.870215 eV Total energy + Delta-G solvation = -4099.287858 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.19858 -40.82959 -39.17076 -39.07642 -36.83408 -35.20500 -34.11266 -32.81999 -32.71941 -32.18915 -29.48090 -28.33811 -28.09923 -27.42879 -25.74544 -25.09003 -24.09269 -23.64138 -21.68789 -21.24510 -20.39657 -19.18033 -18.58842 -18.26952 -17.95640 -17.39817 -17.10572 -16.73008 -16.32306 -16.16206 -15.71842 -15.60685 -15.26986 -15.18057 -15.02300 -14.78640 -14.67330 -14.23698 -14.06289 -13.76743 -13.65033 -13.58569 -13.36076 -13.10872 -13.05932 -13.00734 -12.77583 -12.75910 -12.51942 -12.42828 -12.10244 -12.05191 -11.99834 -11.80302 -11.51623 -11.38057 -11.34807 -11.13917 -10.88291 -10.49295 -10.46464 -9.70057 -9.41754 -8.58563 -7.86552 -5.36256 -0.34754 0.20666 1.38893 1.43908 1.49021 1.78167 1.94952 2.07091 2.48781 2.68468 3.07485 3.27953 3.55627 3.68235 3.70228 3.86647 3.89400 4.07011 4.15398 4.24762 4.31372 4.32232 4.33736 4.40965 4.42956 4.48828 4.61043 4.62706 4.69114 4.70999 4.78288 4.82022 4.88137 4.93811 4.96156 4.99106 5.05514 5.14358 5.16372 5.20789 5.23999 5.37459 5.48750 5.54127 5.57891 5.65437 5.71951 5.78454 6.17017 6.42578 6.42955 6.73965 7.19826 7.20765 7.96951 8.34123 9.17443 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.003159 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.888190 B = 8861.717359 C = 9765.375384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.313 6.313 3 C 0.350 3.650 4 N -0.559 5.559 5 C 0.179 3.821 6 C -0.104 4.104 7 C -0.206 4.206 8 C -0.015 4.015 9 C -0.238 4.238 10 C 0.551 3.449 11 O -0.578 6.578 12 N -0.603 5.603 13 C 0.051 3.949 14 C 0.158 3.842 15 H 0.055 0.945 16 C -0.100 4.100 17 C -0.134 4.134 18 C 0.153 3.847 19 N -0.605 5.605 20 C -0.263 4.263 21 H 0.055 0.945 22 C -0.044 4.044 23 N -0.932 5.932 24 Si 0.956 3.044 25 H -0.291 1.291 26 H -0.289 1.289 27 H -0.270 1.270 28 C 0.194 3.806 29 C -0.129 4.129 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.190 0.810 37 H 0.190 0.810 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.055 0.945 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.026 0.974 45 H 0.055 0.945 46 H 0.037 0.963 47 H 0.248 0.752 48 H 0.006 0.994 49 H 0.024 0.976 50 H 0.083 0.917 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.909 24.281 11.413 28.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.219 6.219 3 C 0.171 3.829 4 N -0.285 5.285 5 C 0.042 3.958 6 C -0.161 4.161 7 C -0.226 4.226 8 C -0.040 4.040 9 C -0.245 4.245 10 C 0.340 3.660 11 O -0.458 6.458 12 N -0.334 5.334 13 C -0.089 4.089 14 C 0.055 3.945 15 H 0.073 0.927 16 C -0.138 4.138 17 C -0.175 4.175 18 C 0.027 3.973 19 N -0.327 5.327 20 C -0.394 4.394 21 H 0.072 0.928 22 C -0.240 4.240 23 N -0.578 5.578 24 Si 0.784 3.216 25 H -0.218 1.218 26 H -0.214 1.214 27 H -0.195 1.195 28 C 0.069 3.931 29 C -0.168 4.168 30 H 0.126 0.874 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.130 0.870 36 H 0.207 0.793 37 H 0.207 0.793 38 H 0.104 0.896 39 H 0.116 0.884 40 H 0.107 0.893 41 H 0.073 0.927 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.044 0.956 45 H 0.073 0.927 46 H 0.055 0.945 47 H 0.057 0.943 48 H 0.025 0.975 49 H 0.043 0.957 50 H 0.101 0.899 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.866 23.368 11.047 28.039 hybrid contribution -0.028 -1.501 -1.085 1.852 sum -10.894 21.868 9.962 26.384 Atomic orbital electron populations 1.23073 0.75928 1.04209 1.02669 1.86465 1.24354 1.24842 1.86219 1.20024 0.88593 0.85158 0.89158 1.67319 1.40468 0.98616 1.22120 1.22026 0.93870 0.91973 0.87939 1.20949 0.98883 0.91696 1.04581 1.22255 0.93019 1.01206 1.06110 1.22732 1.03518 0.88953 0.88794 1.19948 0.91256 0.95480 1.17782 1.18461 0.81879 0.87916 0.77734 1.90821 1.71904 1.34639 1.48429 1.47993 1.12563 1.13554 1.59321 1.22737 1.00827 0.85652 0.99714 1.20343 0.91096 0.86035 0.97073 0.92704 1.20557 1.01523 0.97256 0.94512 1.21323 0.99622 0.96100 1.00422 1.20896 0.94318 0.98903 0.83226 1.43803 1.74534 1.07598 1.06763 1.19356 1.26612 0.99589 0.93811 0.92774 1.25759 0.98672 1.00624 0.98936 1.70142 1.36649 1.42687 1.08286 0.85523 0.78103 0.80332 0.77612 1.21834 1.21442 1.19535 1.20645 0.96621 0.83946 0.91931 1.22240 0.96753 0.98287 0.99532 0.87419 0.91349 0.91998 0.88718 0.90640 0.86957 0.79329 0.79323 0.89582 0.88371 0.89285 0.92676 0.89694 0.89657 0.95556 0.92701 0.94458 0.94270 0.97546 0.95719 0.89853 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.88 10.38 113.37 1.18 2.06 16 2 O -0.31 -11.08 8.87 -68.03 -0.60 -11.69 16 3 C 0.35 10.95 7.48 85.13 0.64 11.58 16 4 N -0.56 -13.88 9.11 -296.06 -2.70 -16.58 16 5 C 0.18 2.99 6.78 42.58 0.29 3.28 16 6 C -0.10 -0.83 10.16 71.24 0.72 -0.11 16 7 C -0.21 -2.65 9.71 22.32 0.22 -2.43 16 8 C -0.02 -0.28 7.62 22.72 0.17 -0.10 16 9 C -0.24 -7.06 5.54 -19.91 -0.11 -7.17 16 10 C 0.55 20.87 7.44 86.69 0.65 21.52 16 11 O -0.58 -28.98 14.93 15.15 0.23 -28.75 16 12 N -0.60 -18.84 2.60 -830.78 -2.16 -21.00 16 13 C 0.05 0.90 8.10 127.77 1.04 1.94 16 14 C 0.16 5.94 2.14 44.21 0.09 6.04 16 15 H 0.05 2.81 6.24 -2.39 -0.01 2.80 16 16 C -0.10 -3.17 3.92 28.61 0.11 -3.06 16 17 C -0.13 -4.81 5.73 29.39 0.17 -4.64 16 18 C 0.15 6.37 5.65 87.37 0.49 6.86 16 19 N -0.60 -31.38 2.26 -698.35 -1.58 -32.96 16 20 C -0.26 -15.46 9.41 84.03 0.79 -14.67 16 21 H 0.05 3.20 7.85 -2.91 -0.02 3.17 16 22 C -0.04 -2.65 4.97 84.86 0.42 -2.23 16 23 N -0.93 -57.61 10.98 21.65 0.24 -57.37 16 24 Si 0.96 48.91 29.57 68.60 2.03 50.94 16 25 H -0.29 -15.22 7.11 99.48 0.71 -14.52 16 26 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 27 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 28 C 0.19 9.74 4.64 86.49 0.40 10.14 16 29 C -0.13 -4.76 4.87 30.27 0.15 -4.61 16 30 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.07 1.47 8.10 -2.39 -0.02 1.45 16 32 H 0.06 1.43 8.11 -2.39 -0.02 1.41 16 33 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.11 0.22 8.07 -2.38 -0.02 0.20 16 36 H 0.19 0.67 8.06 -2.91 -0.02 0.64 16 37 H 0.19 2.28 4.53 -2.91 -0.01 2.27 16 38 H 0.09 1.11 7.30 -2.39 -0.02 1.09 16 39 H 0.10 1.37 4.86 -2.39 -0.01 1.36 16 40 H 0.09 1.30 7.07 -2.39 -0.02 1.29 16 41 H 0.05 1.66 8.04 -2.38 -0.02 1.64 16 42 H 0.08 2.14 7.02 -2.39 -0.02 2.12 16 43 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.05 2.02 8.06 -2.39 -0.02 2.01 16 46 H 0.04 1.59 7.99 -2.38 -0.02 1.57 16 47 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 48 H 0.01 0.35 7.99 -2.38 -0.02 0.33 16 49 H 0.02 1.45 6.48 -2.39 -0.02 1.43 16 50 H 0.08 2.54 7.31 -2.39 -0.02 2.52 16 51 H 0.06 2.26 7.99 -2.39 -0.02 2.25 16 Total: -1.00 -86.75 394.30 3.81 -82.94 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.93 Total: 10.06 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: 7.42 Total: 24.40 kcal Atomic # 7 Polarization: -121.71 SS G_CDS: -6.19 Total: -127.91 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -0.38 Total: -40.44 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 2.03 Total: 50.94 kcal Total: -86.75 3.81 -82.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948837355.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.773 kcal (2) G-P(sol) polarization free energy of solvation -86.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds