Wall clock time and date at job start Wed Apr 1 2020 05:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34479 * 125.57690 * 2 1 4 4 C 1.46687 * 106.33571 * 179.86350 * 3 2 1 5 5 C 1.47268 * 126.94135 * 180.12924 * 4 3 2 6 6 O 1.21625 * 119.99565 * 174.16169 * 5 4 3 7 7 N 1.34773 * 119.99939 * 354.16421 * 5 4 3 8 8 C 1.47482 * 125.65947 * 184.70942 * 7 5 4 9 9 C 1.55284 * 104.77717 * 155.88301 * 8 7 5 10 10 C 1.54491 * 101.42055 * 36.69148 * 9 8 7 11 11 C 1.47179 * 125.66537 * 5.01206 * 7 5 4 12 12 C 1.52522 * 110.09637 * 206.78151 * 10 9 8 13 13 N 1.47303 * 108.39703 * 186.96012 * 12 10 9 14 14 C 1.36937 * 121.06635 * 229.36983 * 13 12 10 15 15 H 1.08005 * 119.99689 * 150.48407 * 14 13 12 16 16 C 1.38813 * 120.00312 * 330.49014 * 14 13 12 17 17 N 1.31619 * 119.99682 * 350.57929 * 16 14 13 18 18 Si 1.86796 * 120.00047 * 170.58541 * 16 14 13 19 19 H 1.48500 * 109.47502 * 59.99551 * 18 16 14 20 20 H 1.48502 * 109.47048 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47184 * 299.99567 * 18 16 14 22 22 C 1.47168 * 117.86682 * 49.40079 * 13 12 10 23 23 C 1.53275 * 108.54922 * 308.86077 * 22 13 12 24 24 O 1.42067 * 110.38754 * 83.74206 * 10 9 8 25 25 C 1.36763 * 106.11462 * 0.39566 * 4 3 2 26 26 C 1.50694 * 125.80407 * 179.76547 * 25 4 3 27 27 N 1.34657 * 108.39849 * 359.75836 * 25 4 3 28 28 C 1.46505 * 124.85480 * 179.97438 * 27 25 4 29 29 H 1.09002 * 109.47327 * 269.70031 * 1 2 3 30 30 H 1.08999 * 109.47077 * 29.69796 * 1 2 3 31 31 H 1.09005 * 109.47618 * 149.69849 * 1 2 3 32 32 H 1.08007 * 126.82946 * 359.97438 * 3 2 1 33 33 H 1.09001 * 110.35380 * 274.84666 * 8 7 5 34 34 H 1.08997 * 110.35783 * 37.13224 * 8 7 5 35 35 H 1.08996 * 111.22742 * 278.59624 * 9 8 7 36 36 H 1.08993 * 110.93313 * 154.65809 * 9 8 7 37 37 H 1.08997 * 109.90743 * 300.88414 * 11 7 5 38 38 H 1.09003 * 109.90305 * 61.96197 * 11 7 5 39 39 H 1.08995 * 109.67663 * 306.68511 * 12 10 9 40 40 H 1.09000 * 109.67655 * 67.19771 * 12 10 9 41 41 H 0.96997 * 119.99637 * 180.02562 * 17 16 14 42 42 H 1.08993 * 109.63022 * 68.58701 * 22 13 12 43 43 H 1.09004 * 109.62410 * 188.96268 * 22 13 12 44 44 H 1.09001 * 109.51442 * 172.82441 * 23 22 13 45 45 H 1.08998 * 109.51421 * 292.97363 * 23 22 13 46 46 H 1.09000 * 109.47002 * 270.02015 * 26 25 4 47 47 H 1.09002 * 109.47559 * 30.01437 * 26 25 4 48 48 H 1.09003 * 109.48093 * 150.01835 * 26 25 4 49 49 H 1.08994 * 109.47077 * 270.00019 * 28 27 25 50 50 H 1.08999 * 109.46875 * 29.99727 * 28 27 25 51 51 H 1.09000 * 109.47080 * 150.00157 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0938 0.0000 4 6 3.6743 0.6104 0.0034 5 6 4.8978 1.4300 0.0072 6 8 5.9859 0.8977 0.1169 7 7 4.8117 2.7698 -0.1107 8 6 5.9524 3.6983 -0.2198 9 6 5.3766 4.9507 -0.9348 10 6 3.9577 5.0240 -0.3281 11 6 3.5641 3.5498 -0.1456 12 6 3.0069 5.7145 -1.3006 13 7 1.7142 5.9150 -0.6235 14 6 0.5386 5.5472 -1.2217 15 1 -0.3035 5.2447 -0.6169 16 6 0.4292 5.5631 -2.6054 17 7 1.3823 6.1038 -3.3347 18 14 -1.0705 4.8174 -3.4324 19 1 -2.2931 5.5207 -2.9678 20 1 -0.9466 4.9615 -4.9052 21 1 -1.1644 3.3774 -3.0817 22 6 1.7266 6.5239 0.7163 23 6 2.7246 5.7572 1.5912 24 8 3.9884 5.6973 0.9226 25 6 3.5997 -0.7552 -0.0040 26 6 4.7720 -1.7021 -0.0089 27 7 2.3007 -1.1099 -0.0059 28 6 1.8097 -2.4902 -0.0138 29 1 -0.3634 -0.0054 1.0277 30 1 -0.3633 0.8927 -0.5091 31 1 -0.3634 -0.8873 -0.5185 32 1 1.9629 2.1233 -0.0004 33 1 6.3234 3.9611 0.7709 34 1 6.7477 3.2533 -0.8176 35 1 5.3331 4.8039 -2.0140 36 1 5.9543 5.8409 -0.6865 37 1 2.9462 3.2242 -0.9824 38 1 3.0197 3.4210 0.7899 39 1 3.4202 6.6789 -1.5956 40 1 2.8668 5.0898 -2.1827 41 1 1.3057 6.1152 -4.3015 42 1 2.0317 7.5676 0.6414 43 1 0.7303 6.4644 1.1546 44 1 2.8416 6.2706 2.5455 45 1 2.3558 4.7461 1.7637 46 1 5.0550 -1.9246 -1.0377 47 1 5.6138 -1.2410 0.5077 48 1 4.4954 -2.6257 0.4997 49 1 1.6878 -2.8265 -1.0434 50 1 2.5265 -3.1337 0.4962 51 1 0.8495 -2.5372 0.4998 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972669239.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:03 Heat of formation + Delta-G solvation = 7.590966 kcal Electronic energy + Delta-G solvation = -33015.209299 eV Core-core repulsion = 28916.691688 eV Total energy + Delta-G solvation = -4098.517611 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.37507 -39.88078 -38.23980 -35.85976 -34.43823 -33.00215 -32.53719 -31.52133 -31.16341 -29.29242 -29.01473 -27.53208 -26.56825 -25.77858 -24.61694 -23.22994 -23.04758 -21.28007 -20.80829 -19.69494 -18.98110 -17.69050 -16.97769 -16.71629 -16.24538 -15.83590 -15.65344 -15.11987 -14.90331 -14.53484 -14.34339 -14.18229 -13.62408 -13.54529 -13.35579 -13.28198 -13.17347 -13.12555 -12.88479 -12.83824 -12.65720 -12.40689 -12.25506 -12.13576 -11.77500 -11.65873 -11.56781 -11.30505 -11.27248 -11.00123 -10.95621 -10.76698 -10.71775 -10.42614 -10.29420 -9.94858 -9.55677 -9.43170 -8.95536 -8.56773 -8.45714 -8.20611 -7.77319 -6.70580 -5.85441 -3.33635 1.93575 2.56658 2.81199 3.32195 3.37714 3.39011 3.52196 3.86765 4.29667 4.41543 4.58857 4.73662 4.89560 4.91741 4.98031 5.04060 5.11415 5.24320 5.30976 5.32492 5.38686 5.49277 5.55021 5.58646 5.62820 5.72482 5.79107 5.82967 5.89028 5.94722 6.00140 6.03632 6.09263 6.10580 6.16468 6.23314 6.37027 6.38904 6.43643 6.50818 6.65534 6.78060 6.80265 7.00213 7.09097 7.23671 7.35209 7.49267 7.69030 7.95512 8.00585 8.33995 8.66984 9.10616 9.71722 10.31105 11.22444 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008967 B = 0.004912 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.978324 B = 5698.727742 C = 7629.205179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.005 3.995 3 C -0.163 4.163 4 C -0.228 4.228 5 C 0.607 3.393 6 O -0.565 6.565 7 N -0.609 5.609 8 C 0.113 3.887 9 C -0.118 4.118 10 C 0.083 3.917 11 C 0.091 3.909 12 C 0.164 3.836 13 N -0.595 5.595 14 C -0.253 4.253 15 H 0.067 0.933 16 C 0.007 3.993 17 N -0.905 5.905 18 Si 0.903 3.097 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.110 3.890 23 C 0.044 3.956 24 O -0.375 6.375 25 C 0.097 3.903 26 C -0.090 4.090 27 N -0.443 5.443 28 C 0.068 3.932 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.160 0.840 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.032 0.968 40 H 0.099 0.901 41 H 0.256 0.744 42 H 0.026 0.974 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.046 0.954 46 H 0.073 0.927 47 H 0.101 0.899 48 H 0.058 0.942 49 H 0.072 0.928 50 H 0.083 0.917 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.989 -12.958 6.979 14.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 C -0.186 4.186 4 C -0.238 4.238 5 C 0.399 3.601 6 O -0.447 6.447 7 N -0.342 5.342 8 C -0.009 4.009 9 C -0.156 4.156 10 C 0.041 3.959 11 C -0.031 4.031 12 C 0.038 3.962 13 N -0.319 5.319 14 C -0.383 4.383 15 H 0.085 0.915 16 C -0.192 4.192 17 N -0.549 5.549 18 Si 0.732 3.268 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.208 1.208 22 C -0.017 4.017 23 C -0.034 4.034 24 O -0.294 6.294 25 C -0.019 4.019 26 C -0.148 4.148 27 N -0.121 5.121 28 C -0.074 4.074 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.177 0.823 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.050 0.950 40 H 0.117 0.883 41 H 0.066 0.934 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.064 0.936 46 H 0.091 0.909 47 H 0.120 0.880 48 H 0.077 0.923 49 H 0.091 0.909 50 H 0.102 0.898 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.543 -13.530 6.917 15.407 hybrid contribution -1.275 -0.347 -0.604 1.453 sum 1.268 -13.877 6.312 15.298 Atomic orbital electron populations 1.20325 0.87863 1.03478 1.02410 1.20263 0.93547 0.85351 1.11066 1.22524 0.90748 0.98657 1.06675 1.20014 0.93024 0.91937 1.18852 1.16959 0.87622 0.79995 0.75495 1.90668 1.29224 1.71844 1.52973 1.48309 1.08545 1.05064 1.72252 1.22231 0.89268 0.89072 1.00324 1.22765 0.94978 0.97655 1.00238 1.22754 0.96506 0.90163 0.86477 1.22855 0.86320 0.91473 1.02486 1.21268 0.83332 0.98310 0.93281 1.44071 1.02593 1.70357 1.14851 1.19104 0.91148 1.38589 0.89414 0.91545 1.25130 0.97693 0.99267 0.97071 1.69924 1.33558 1.46329 1.05099 0.86369 0.82695 0.79193 0.78501 1.20866 1.21585 1.20832 1.21592 0.97256 0.95054 0.87753 1.23090 0.85378 0.99783 0.95161 1.87684 1.30923 1.77297 1.33491 1.20157 0.84535 0.93942 1.03299 1.20533 0.94896 0.96273 1.03068 1.43434 1.05125 1.06258 1.57278 1.22021 1.01301 0.80791 1.03276 0.91261 0.89490 0.92163 0.82251 0.91561 0.90887 0.89148 0.89260 0.89483 0.91124 0.94999 0.88337 0.93376 0.95599 0.91960 0.89959 0.93593 0.90856 0.88033 0.92283 0.90902 0.89843 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 9.81 36.00 0.35 -0.59 16 2 C 0.00 0.07 6.85 -81.87 -0.56 -0.49 16 3 C -0.16 -2.75 9.29 -37.50 -0.35 -3.09 16 4 C -0.23 -4.01 6.22 -103.35 -0.64 -4.66 16 5 C 0.61 11.60 7.83 -12.59 -0.10 11.50 16 6 O -0.57 -11.51 15.09 5.26 0.08 -11.43 16 7 N -0.61 -11.18 3.33 -171.84 -0.57 -11.75 16 8 C 0.11 1.88 6.90 -2.29 -0.02 1.86 16 9 C -0.12 -1.95 6.23 -24.74 -0.15 -2.11 16 10 C 0.08 1.58 0.80 -89.73 -0.07 1.51 16 11 C 0.09 1.70 4.08 -3.32 -0.01 1.69 16 12 C 0.16 3.73 3.92 -3.85 -0.02 3.72 16 13 N -0.59 -14.03 2.96 -172.18 -0.51 -14.54 16 14 C -0.25 -6.47 9.66 -15.06 -0.15 -6.61 16 15 H 0.07 1.65 7.85 -52.48 -0.41 1.24 16 16 C 0.01 0.19 5.10 -17.43 -0.09 0.10 16 17 N -0.90 -24.97 10.96 55.49 0.61 -24.36 16 18 Si 0.90 20.67 29.56 -169.99 -5.03 15.64 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 C 0.11 2.21 6.72 -3.54 -0.02 2.18 16 23 C 0.04 0.77 6.76 37.30 0.25 1.02 16 24 O -0.37 -7.17 10.26 -35.23 -0.36 -7.53 16 25 C 0.10 1.45 6.89 -81.89 -0.56 0.88 16 26 C -0.09 -1.10 9.58 36.00 0.35 -0.76 16 27 N -0.44 -5.72 3.09 -115.28 -0.36 -6.07 16 28 C 0.07 0.54 10.40 59.85 0.62 1.16 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.56 7.60 -51.93 -0.39 0.17 16 32 H 0.16 2.84 4.84 -52.48 -0.25 2.58 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 35 H 0.09 1.48 8.01 -51.93 -0.42 1.06 16 36 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.09 1.78 6.17 -51.93 -0.32 1.46 16 38 H 0.07 1.34 5.04 -51.93 -0.26 1.07 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.10 2.48 5.96 -51.93 -0.31 2.17 16 41 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 44 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.05 0.80 6.22 -51.93 -0.32 0.48 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.10 1.43 6.36 -51.93 -0.33 1.10 16 48 H 0.06 0.54 6.92 -51.93 -0.36 0.18 16 49 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.08 0.53 6.87 -51.93 -0.36 0.17 16 51 H 0.08 0.54 7.52 -51.93 -0.39 0.15 16 LS Contribution 390.60 15.07 5.89 5.89 Total: -1.00 -31.62 390.60 -9.32 -40.94 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -7.90 Total: 5.91 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -1.17 Total: 7.32 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -0.83 Total: -56.73 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.28 Total: -18.97 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.62 -9.32 -40.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972669239.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.530 kcal (2) G-P(sol) polarization free energy of solvation -31.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds