Wall clock time and date at job start Wed Apr 1 2020 05:06:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.34479 * 125.57690 * 2 1
4 4 C 1.46687 * 106.33571 * 179.86350 * 3 2 1
5 5 C 1.47268 * 126.94135 * 180.12924 * 4 3 2
6 6 O 1.21625 * 119.99565 * 174.16169 * 5 4 3
7 7 N 1.34773 * 119.99939 * 354.16421 * 5 4 3
8 8 C 1.47482 * 125.65947 * 184.70942 * 7 5 4
9 9 C 1.55284 * 104.77717 * 155.88301 * 8 7 5
10 10 C 1.54491 * 101.42055 * 36.69148 * 9 8 7
11 11 C 1.47179 * 125.66537 * 5.01206 * 7 5 4
12 12 C 1.52522 * 110.09637 * 206.78151 * 10 9 8
13 13 N 1.47303 * 108.39703 * 186.96012 * 12 10 9
14 14 C 1.36937 * 121.06635 * 229.36983 * 13 12 10
15 15 H 1.08005 * 119.99689 * 150.48407 * 14 13 12
16 16 C 1.38813 * 120.00312 * 330.49014 * 14 13 12
17 17 N 1.31619 * 119.99682 * 350.57929 * 16 14 13
18 18 Si 1.86796 * 120.00047 * 170.58541 * 16 14 13
19 19 H 1.48500 * 109.47502 * 59.99551 * 18 16 14
20 20 H 1.48502 * 109.47048 * 179.97438 * 18 16 14
21 21 H 1.48503 * 109.47184 * 299.99567 * 18 16 14
22 22 C 1.47168 * 117.86682 * 49.40079 * 13 12 10
23 23 C 1.53275 * 108.54922 * 308.86077 * 22 13 12
24 24 O 1.42067 * 110.38754 * 83.74206 * 10 9 8
25 25 C 1.36763 * 106.11462 * 0.39566 * 4 3 2
26 26 C 1.50694 * 125.80407 * 179.76547 * 25 4 3
27 27 N 1.34657 * 108.39849 * 359.75836 * 25 4 3
28 28 C 1.46505 * 124.85480 * 179.97438 * 27 25 4
29 29 H 1.09002 * 109.47327 * 269.70031 * 1 2 3
30 30 H 1.08999 * 109.47077 * 29.69796 * 1 2 3
31 31 H 1.09005 * 109.47618 * 149.69849 * 1 2 3
32 32 H 1.08007 * 126.82946 * 359.97438 * 3 2 1
33 33 H 1.09001 * 110.35380 * 274.84666 * 8 7 5
34 34 H 1.08997 * 110.35783 * 37.13224 * 8 7 5
35 35 H 1.08996 * 111.22742 * 278.59624 * 9 8 7
36 36 H 1.08993 * 110.93313 * 154.65809 * 9 8 7
37 37 H 1.08997 * 109.90743 * 300.88414 * 11 7 5
38 38 H 1.09003 * 109.90305 * 61.96197 * 11 7 5
39 39 H 1.08995 * 109.67663 * 306.68511 * 12 10 9
40 40 H 1.09000 * 109.67655 * 67.19771 * 12 10 9
41 41 H 0.96997 * 119.99637 * 180.02562 * 17 16 14
42 42 H 1.08993 * 109.63022 * 68.58701 * 22 13 12
43 43 H 1.09004 * 109.62410 * 188.96268 * 22 13 12
44 44 H 1.09001 * 109.51442 * 172.82441 * 23 22 13
45 45 H 1.08998 * 109.51421 * 292.97363 * 23 22 13
46 46 H 1.09000 * 109.47002 * 270.02015 * 26 25 4
47 47 H 1.09002 * 109.47559 * 30.01437 * 26 25 4
48 48 H 1.09003 * 109.48093 * 150.01835 * 26 25 4
49 49 H 1.08994 * 109.47077 * 270.00019 * 28 27 25
50 50 H 1.08999 * 109.46875 * 29.99727 * 28 27 25
51 51 H 1.09000 * 109.47080 * 150.00157 * 28 27 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2893 1.0938 0.0000
4 6 3.6743 0.6104 0.0034
5 6 4.8978 1.4300 0.0072
6 8 5.9859 0.8977 0.1169
7 7 4.8117 2.7698 -0.1107
8 6 5.9524 3.6983 -0.2198
9 6 5.3766 4.9507 -0.9348
10 6 3.9577 5.0240 -0.3281
11 6 3.5641 3.5498 -0.1456
12 6 3.0069 5.7145 -1.3006
13 7 1.7142 5.9150 -0.6235
14 6 0.5386 5.5472 -1.2217
15 1 -0.3035 5.2447 -0.6169
16 6 0.4292 5.5631 -2.6054
17 7 1.3823 6.1038 -3.3347
18 14 -1.0705 4.8174 -3.4324
19 1 -2.2931 5.5207 -2.9678
20 1 -0.9466 4.9615 -4.9052
21 1 -1.1644 3.3774 -3.0817
22 6 1.7266 6.5239 0.7163
23 6 2.7246 5.7572 1.5912
24 8 3.9884 5.6973 0.9226
25 6 3.5997 -0.7552 -0.0040
26 6 4.7720 -1.7021 -0.0089
27 7 2.3007 -1.1099 -0.0059
28 6 1.8097 -2.4902 -0.0138
29 1 -0.3634 -0.0054 1.0277
30 1 -0.3633 0.8927 -0.5091
31 1 -0.3634 -0.8873 -0.5185
32 1 1.9629 2.1233 -0.0004
33 1 6.3234 3.9611 0.7709
34 1 6.7477 3.2533 -0.8176
35 1 5.3331 4.8039 -2.0140
36 1 5.9543 5.8409 -0.6865
37 1 2.9462 3.2242 -0.9824
38 1 3.0197 3.4210 0.7899
39 1 3.4202 6.6789 -1.5956
40 1 2.8668 5.0898 -2.1827
41 1 1.3057 6.1152 -4.3015
42 1 2.0317 7.5676 0.6414
43 1 0.7303 6.4644 1.1546
44 1 2.8416 6.2706 2.5455
45 1 2.3558 4.7461 1.7637
46 1 5.0550 -1.9246 -1.0377
47 1 5.6138 -1.2410 0.5077
48 1 4.4954 -2.6257 0.4997
49 1 1.6878 -2.8265 -1.0434
50 1 2.5265 -3.1337 0.4962
51 1 0.8495 -2.5372 0.4998
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000972669239.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:06:03
Heat of formation + Delta-G solvation = 7.590966 kcal
Electronic energy + Delta-G solvation = -33015.209299 eV
Core-core repulsion = 28916.691688 eV
Total energy + Delta-G solvation = -4098.517611 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.37507 -39.88078 -38.23980 -35.85976 -34.43823 -33.00215 -32.53719 -31.52133
-31.16341 -29.29242 -29.01473 -27.53208 -26.56825 -25.77858 -24.61694 -23.22994
-23.04758 -21.28007 -20.80829 -19.69494 -18.98110 -17.69050 -16.97769 -16.71629
-16.24538 -15.83590 -15.65344 -15.11987 -14.90331 -14.53484 -14.34339 -14.18229
-13.62408 -13.54529 -13.35579 -13.28198 -13.17347 -13.12555 -12.88479 -12.83824
-12.65720 -12.40689 -12.25506 -12.13576 -11.77500 -11.65873 -11.56781 -11.30505
-11.27248 -11.00123 -10.95621 -10.76698 -10.71775 -10.42614 -10.29420 -9.94858
-9.55677 -9.43170 -8.95536 -8.56773 -8.45714 -8.20611 -7.77319 -6.70580
-5.85441 -3.33635 1.93575 2.56658 2.81199 3.32195 3.37714 3.39011
3.52196 3.86765 4.29667 4.41543 4.58857 4.73662 4.89560 4.91741
4.98031 5.04060 5.11415 5.24320 5.30976 5.32492 5.38686 5.49277
5.55021 5.58646 5.62820 5.72482 5.79107 5.82967 5.89028 5.94722
6.00140 6.03632 6.09263 6.10580 6.16468 6.23314 6.37027 6.38904
6.43643 6.50818 6.65534 6.78060 6.80265 7.00213 7.09097 7.23671
7.35209 7.49267 7.69030 7.95512 8.00585 8.33995 8.66984 9.10616
9.71722 10.31105 11.22444
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.008967 B = 0.004912 C = 0.003669
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3121.978324 B = 5698.727742 C = 7629.205179
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.083 4.083
2 C 0.005 3.995
3 C -0.163 4.163
4 C -0.228 4.228
5 C 0.607 3.393
6 O -0.565 6.565
7 N -0.609 5.609
8 C 0.113 3.887
9 C -0.118 4.118
10 C 0.083 3.917
11 C 0.091 3.909
12 C 0.164 3.836
13 N -0.595 5.595
14 C -0.253 4.253
15 H 0.067 0.933
16 C 0.007 3.993
17 N -0.905 5.905
18 Si 0.903 3.097
19 H -0.282 1.282
20 H -0.290 1.290
21 H -0.282 1.282
22 C 0.110 3.890
23 C 0.044 3.956
24 O -0.375 6.375
25 C 0.097 3.903
26 C -0.090 4.090
27 N -0.443 5.443
28 C 0.068 3.932
29 H 0.069 0.931
30 H 0.086 0.914
31 H 0.059 0.941
32 H 0.160 0.840
33 H 0.066 0.934
34 H 0.073 0.927
35 H 0.090 0.910
36 H 0.089 0.911
37 H 0.087 0.913
38 H 0.071 0.929
39 H 0.032 0.968
40 H 0.099 0.901
41 H 0.256 0.744
42 H 0.026 0.974
43 H 0.062 0.938
44 H 0.082 0.918
45 H 0.046 0.954
46 H 0.073 0.927
47 H 0.101 0.899
48 H 0.058 0.942
49 H 0.072 0.928
50 H 0.083 0.917
51 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.989 -12.958 6.979 14.852
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.102 4.102
3 C -0.186 4.186
4 C -0.238 4.238
5 C 0.399 3.601
6 O -0.447 6.447
7 N -0.342 5.342
8 C -0.009 4.009
9 C -0.156 4.156
10 C 0.041 3.959
11 C -0.031 4.031
12 C 0.038 3.962
13 N -0.319 5.319
14 C -0.383 4.383
15 H 0.085 0.915
16 C -0.192 4.192
17 N -0.549 5.549
18 Si 0.732 3.268
19 H -0.209 1.209
20 H -0.216 1.216
21 H -0.208 1.208
22 C -0.017 4.017
23 C -0.034 4.034
24 O -0.294 6.294
25 C -0.019 4.019
26 C -0.148 4.148
27 N -0.121 5.121
28 C -0.074 4.074
29 H 0.087 0.913
30 H 0.105 0.895
31 H 0.078 0.922
32 H 0.177 0.823
33 H 0.084 0.916
34 H 0.091 0.909
35 H 0.109 0.891
36 H 0.107 0.893
37 H 0.105 0.895
38 H 0.089 0.911
39 H 0.050 0.950
40 H 0.117 0.883
41 H 0.066 0.934
42 H 0.044 0.956
43 H 0.080 0.920
44 H 0.100 0.900
45 H 0.064 0.936
46 H 0.091 0.909
47 H 0.120 0.880
48 H 0.077 0.923
49 H 0.091 0.909
50 H 0.102 0.898
51 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 2.543 -13.530 6.917 15.407
hybrid contribution -1.275 -0.347 -0.604 1.453
sum 1.268 -13.877 6.312 15.298
Atomic orbital electron populations
1.20325 0.87863 1.03478 1.02410 1.20263 0.93547 0.85351 1.11066
1.22524 0.90748 0.98657 1.06675 1.20014 0.93024 0.91937 1.18852
1.16959 0.87622 0.79995 0.75495 1.90668 1.29224 1.71844 1.52973
1.48309 1.08545 1.05064 1.72252 1.22231 0.89268 0.89072 1.00324
1.22765 0.94978 0.97655 1.00238 1.22754 0.96506 0.90163 0.86477
1.22855 0.86320 0.91473 1.02486 1.21268 0.83332 0.98310 0.93281
1.44071 1.02593 1.70357 1.14851 1.19104 0.91148 1.38589 0.89414
0.91545 1.25130 0.97693 0.99267 0.97071 1.69924 1.33558 1.46329
1.05099 0.86369 0.82695 0.79193 0.78501 1.20866 1.21585 1.20832
1.21592 0.97256 0.95054 0.87753 1.23090 0.85378 0.99783 0.95161
1.87684 1.30923 1.77297 1.33491 1.20157 0.84535 0.93942 1.03299
1.20533 0.94896 0.96273 1.03068 1.43434 1.05125 1.06258 1.57278
1.22021 1.01301 0.80791 1.03276 0.91261 0.89490 0.92163 0.82251
0.91561 0.90887 0.89148 0.89260 0.89483 0.91124 0.94999 0.88337
0.93376 0.95599 0.91960 0.89959 0.93593 0.90856 0.88033 0.92283
0.90902 0.89843 0.89759
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.94 9.81 36.00 0.35 -0.59 16
2 C 0.00 0.07 6.85 -81.87 -0.56 -0.49 16
3 C -0.16 -2.75 9.29 -37.50 -0.35 -3.09 16
4 C -0.23 -4.01 6.22 -103.35 -0.64 -4.66 16
5 C 0.61 11.60 7.83 -12.59 -0.10 11.50 16
6 O -0.57 -11.51 15.09 5.26 0.08 -11.43 16
7 N -0.61 -11.18 3.33 -171.84 -0.57 -11.75 16
8 C 0.11 1.88 6.90 -2.29 -0.02 1.86 16
9 C -0.12 -1.95 6.23 -24.74 -0.15 -2.11 16
10 C 0.08 1.58 0.80 -89.73 -0.07 1.51 16
11 C 0.09 1.70 4.08 -3.32 -0.01 1.69 16
12 C 0.16 3.73 3.92 -3.85 -0.02 3.72 16
13 N -0.59 -14.03 2.96 -172.18 -0.51 -14.54 16
14 C -0.25 -6.47 9.66 -15.06 -0.15 -6.61 16
15 H 0.07 1.65 7.85 -52.48 -0.41 1.24 16
16 C 0.01 0.19 5.10 -17.43 -0.09 0.10 16
17 N -0.90 -24.97 10.96 55.49 0.61 -24.36 16
18 Si 0.90 20.67 29.56 -169.99 -5.03 15.64 16
19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
20 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16
21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16
22 C 0.11 2.21 6.72 -3.54 -0.02 2.18 16
23 C 0.04 0.77 6.76 37.30 0.25 1.02 16
24 O -0.37 -7.17 10.26 -35.23 -0.36 -7.53 16
25 C 0.10 1.45 6.89 -81.89 -0.56 0.88 16
26 C -0.09 -1.10 9.58 36.00 0.35 -0.76 16
27 N -0.44 -5.72 3.09 -115.28 -0.36 -6.07 16
28 C 0.07 0.54 10.40 59.85 0.62 1.16 16
29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16
30 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16
31 H 0.06 0.56 7.60 -51.93 -0.39 0.17 16
32 H 0.16 2.84 4.84 -52.48 -0.25 2.58 16
33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16
34 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16
35 H 0.09 1.48 8.01 -51.93 -0.42 1.06 16
36 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16
37 H 0.09 1.78 6.17 -51.93 -0.32 1.46 16
38 H 0.07 1.34 5.04 -51.93 -0.26 1.07 16
39 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16
40 H 0.10 2.48 5.96 -51.93 -0.31 2.17 16
41 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16
42 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16
43 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16
44 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16
45 H 0.05 0.80 6.22 -51.93 -0.32 0.48 16
46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
47 H 0.10 1.43 6.36 -51.93 -0.33 1.10 16
48 H 0.06 0.54 6.92 -51.93 -0.36 0.18 16
49 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
50 H 0.08 0.53 6.87 -51.93 -0.36 0.17 16
51 H 0.08 0.54 7.52 -51.93 -0.39 0.15 16
LS Contribution 390.60 15.07 5.89 5.89
Total: -1.00 -31.62 390.60 -9.32 -40.94
By element:
Atomic # 1 Polarization: 13.81 SS G_CDS: -7.90 Total: 5.91 kcal
Atomic # 6 Polarization: 8.49 SS G_CDS: -1.17 Total: 7.32 kcal
Atomic # 7 Polarization: -55.90 SS G_CDS: -0.83 Total: -56.73 kcal
Atomic # 8 Polarization: -18.69 SS G_CDS: -0.28 Total: -18.97 kcal
Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal
Total LS contribution 5.89 Total: 5.89 kcal
Total: -31.62 -9.32 -40.94 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000972669239.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.530 kcal
(2) G-P(sol) polarization free energy of solvation -31.616 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.914 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.591 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds