Wall clock time and date at job start Wed Apr 1 2020 05:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34479 * 125.57690 * 2 1 4 4 C 1.46687 * 106.33571 * 179.86350 * 3 2 1 5 5 C 1.47268 * 126.94135 * 180.12924 * 4 3 2 6 6 O 1.21625 * 119.99565 * 174.16169 * 5 4 3 7 7 N 1.34773 * 119.99939 * 354.16421 * 5 4 3 8 8 C 1.47482 * 125.65947 * 184.70942 * 7 5 4 9 9 C 1.55284 * 104.77717 * 155.88301 * 8 7 5 10 10 C 1.54491 * 101.42055 * 36.69148 * 9 8 7 11 11 C 1.47179 * 125.66537 * 5.01206 * 7 5 4 12 12 C 1.52522 * 110.09637 * 206.78151 * 10 9 8 13 13 N 1.47303 * 108.39703 * 186.96012 * 12 10 9 14 14 C 1.36937 * 121.06635 * 229.36983 * 13 12 10 15 15 H 1.08005 * 119.99689 * 150.48407 * 14 13 12 16 16 C 1.38813 * 120.00312 * 330.49014 * 14 13 12 17 17 N 1.31619 * 119.99682 * 350.57929 * 16 14 13 18 18 Si 1.86796 * 120.00047 * 170.58541 * 16 14 13 19 19 H 1.48500 * 109.47502 * 59.99551 * 18 16 14 20 20 H 1.48502 * 109.47048 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47184 * 299.99567 * 18 16 14 22 22 C 1.47168 * 117.86682 * 49.40079 * 13 12 10 23 23 C 1.53275 * 108.54922 * 308.86077 * 22 13 12 24 24 O 1.42067 * 110.38754 * 83.74206 * 10 9 8 25 25 C 1.36763 * 106.11462 * 0.39566 * 4 3 2 26 26 C 1.50694 * 125.80407 * 179.76547 * 25 4 3 27 27 N 1.34657 * 108.39849 * 359.75836 * 25 4 3 28 28 C 1.46505 * 124.85480 * 179.97438 * 27 25 4 29 29 H 1.09002 * 109.47327 * 269.70031 * 1 2 3 30 30 H 1.08999 * 109.47077 * 29.69796 * 1 2 3 31 31 H 1.09005 * 109.47618 * 149.69849 * 1 2 3 32 32 H 1.08007 * 126.82946 * 359.97438 * 3 2 1 33 33 H 1.09001 * 110.35380 * 274.84666 * 8 7 5 34 34 H 1.08997 * 110.35783 * 37.13224 * 8 7 5 35 35 H 1.08996 * 111.22742 * 278.59624 * 9 8 7 36 36 H 1.08993 * 110.93313 * 154.65809 * 9 8 7 37 37 H 1.08997 * 109.90743 * 300.88414 * 11 7 5 38 38 H 1.09003 * 109.90305 * 61.96197 * 11 7 5 39 39 H 1.08995 * 109.67663 * 306.68511 * 12 10 9 40 40 H 1.09000 * 109.67655 * 67.19771 * 12 10 9 41 41 H 0.96997 * 119.99637 * 180.02562 * 17 16 14 42 42 H 1.08993 * 109.63022 * 68.58701 * 22 13 12 43 43 H 1.09004 * 109.62410 * 188.96268 * 22 13 12 44 44 H 1.09001 * 109.51442 * 172.82441 * 23 22 13 45 45 H 1.08998 * 109.51421 * 292.97363 * 23 22 13 46 46 H 1.09000 * 109.47002 * 270.02015 * 26 25 4 47 47 H 1.09002 * 109.47559 * 30.01437 * 26 25 4 48 48 H 1.09003 * 109.48093 * 150.01835 * 26 25 4 49 49 H 1.08994 * 109.47077 * 270.00019 * 28 27 25 50 50 H 1.08999 * 109.46875 * 29.99727 * 28 27 25 51 51 H 1.09000 * 109.47080 * 150.00157 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0938 0.0000 4 6 3.6743 0.6104 0.0034 5 6 4.8978 1.4300 0.0072 6 8 5.9859 0.8977 0.1169 7 7 4.8117 2.7698 -0.1107 8 6 5.9524 3.6983 -0.2198 9 6 5.3766 4.9507 -0.9348 10 6 3.9577 5.0240 -0.3281 11 6 3.5641 3.5498 -0.1456 12 6 3.0069 5.7145 -1.3006 13 7 1.7142 5.9150 -0.6235 14 6 0.5386 5.5472 -1.2217 15 1 -0.3035 5.2447 -0.6169 16 6 0.4292 5.5631 -2.6054 17 7 1.3823 6.1038 -3.3347 18 14 -1.0705 4.8174 -3.4324 19 1 -2.2931 5.5207 -2.9678 20 1 -0.9466 4.9615 -4.9052 21 1 -1.1644 3.3774 -3.0817 22 6 1.7266 6.5239 0.7163 23 6 2.7246 5.7572 1.5912 24 8 3.9884 5.6973 0.9226 25 6 3.5997 -0.7552 -0.0040 26 6 4.7720 -1.7021 -0.0089 27 7 2.3007 -1.1099 -0.0059 28 6 1.8097 -2.4902 -0.0138 29 1 -0.3634 -0.0054 1.0277 30 1 -0.3633 0.8927 -0.5091 31 1 -0.3634 -0.8873 -0.5185 32 1 1.9629 2.1233 -0.0004 33 1 6.3234 3.9611 0.7709 34 1 6.7477 3.2533 -0.8176 35 1 5.3331 4.8039 -2.0140 36 1 5.9543 5.8409 -0.6865 37 1 2.9462 3.2242 -0.9824 38 1 3.0197 3.4210 0.7899 39 1 3.4202 6.6789 -1.5956 40 1 2.8668 5.0898 -2.1827 41 1 1.3057 6.1152 -4.3015 42 1 2.0317 7.5676 0.6414 43 1 0.7303 6.4644 1.1546 44 1 2.8416 6.2706 2.5455 45 1 2.3558 4.7461 1.7637 46 1 5.0550 -1.9246 -1.0377 47 1 5.6138 -1.2410 0.5077 48 1 4.4954 -2.6257 0.4997 49 1 1.6878 -2.8265 -1.0434 50 1 2.5265 -3.1337 0.4962 51 1 0.8495 -2.5372 0.4998 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972669239.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:02 Heat of formation + Delta-G solvation = -11.253707 kcal Electronic energy + Delta-G solvation = -33016.026465 eV Core-core repulsion = 28916.691688 eV Total energy + Delta-G solvation = -4099.334777 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.50035 -41.37393 -39.73505 -37.39611 -36.22497 -34.06727 -33.58536 -33.22286 -32.81094 -30.68521 -30.00493 -29.21372 -27.68306 -27.35780 -25.83976 -24.96542 -24.39336 -22.79825 -22.08341 -20.95079 -20.58162 -18.96190 -18.81682 -18.01747 -17.75984 -17.07049 -16.86947 -16.53337 -16.25619 -16.08915 -15.95550 -15.69055 -15.22368 -15.10035 -14.63890 -14.53651 -14.45880 -14.22168 -14.08332 -14.05899 -13.85409 -13.56716 -13.29792 -13.26193 -13.06757 -13.03149 -12.81366 -12.77583 -12.70940 -12.56299 -12.43001 -12.36348 -12.25914 -12.14061 -12.08854 -11.75946 -11.10543 -10.95901 -10.66679 -10.45622 -9.74433 -9.51440 -8.93346 -8.63585 -7.85057 -5.35946 0.70553 1.39107 1.48656 1.49851 1.56123 1.80906 2.16939 2.48123 2.50678 2.81589 3.30871 3.42582 3.53276 3.71512 3.80554 3.86221 3.94170 4.04968 4.11089 4.23866 4.31132 4.32060 4.37494 4.38266 4.48443 4.54236 4.61724 4.63331 4.67105 4.71960 4.73084 4.76013 4.79232 4.82560 4.88140 4.93364 5.00299 5.04937 5.08450 5.10268 5.16217 5.27396 5.27659 5.39301 5.58359 5.65384 5.80330 6.10898 6.34558 6.36132 6.41210 6.54608 7.12196 7.22803 7.79101 8.35404 9.20637 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008967 B = 0.004912 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.978324 B = 5698.727742 C = 7629.205179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.011 3.989 3 C -0.196 4.196 4 C -0.271 4.271 5 C 0.600 3.400 6 O -0.585 6.585 7 N -0.614 5.614 8 C 0.116 3.884 9 C -0.111 4.111 10 C 0.088 3.912 11 C 0.114 3.886 12 C 0.178 3.822 13 N -0.611 5.611 14 C -0.257 4.257 15 H 0.073 0.927 16 C -0.044 4.044 17 N -0.936 5.936 18 Si 0.961 3.039 19 H -0.275 1.275 20 H -0.299 1.299 21 H -0.272 1.272 22 C 0.107 3.893 23 C 0.048 3.952 24 O -0.378 6.378 25 C 0.102 3.898 26 C -0.085 4.085 27 N -0.436 5.436 28 C 0.056 3.944 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.139 0.861 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.004 0.996 40 H 0.069 0.931 41 H 0.249 0.751 42 H 0.019 0.981 43 H 0.073 0.927 44 H 0.119 0.881 45 H 0.047 0.953 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.095 0.905 49 H 0.087 0.913 50 H 0.105 0.895 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.066 -15.415 8.344 17.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 C -0.219 4.219 4 C -0.281 4.281 5 C 0.394 3.606 6 O -0.469 6.469 7 N -0.347 5.347 8 C -0.006 4.006 9 C -0.149 4.149 10 C 0.047 3.953 11 C -0.009 4.009 12 C 0.052 3.948 13 N -0.335 5.335 14 C -0.386 4.386 15 H 0.090 0.910 16 C -0.239 4.239 17 N -0.582 5.582 18 Si 0.789 3.211 19 H -0.201 1.201 20 H -0.225 1.225 21 H -0.198 1.198 22 C -0.019 4.019 23 C -0.029 4.029 24 O -0.297 6.297 25 C -0.017 4.017 26 C -0.143 4.143 27 N -0.112 5.112 28 C -0.083 4.083 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.157 0.843 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.126 0.874 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.022 0.978 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.037 0.963 43 H 0.092 0.908 44 H 0.137 0.863 45 H 0.066 0.934 46 H 0.099 0.901 47 H 0.098 0.902 48 H 0.114 0.886 49 H 0.106 0.894 50 H 0.123 0.877 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.602 -15.999 8.317 18.103 hybrid contribution -1.039 0.391 -0.981 1.481 sum 0.563 -15.608 7.337 17.255 Atomic orbital electron populations 1.20391 0.85614 1.04009 1.03750 1.20632 0.94876 0.85216 1.08998 1.22406 0.91312 0.98756 1.09459 1.20131 0.92619 0.93376 1.21938 1.17319 0.88111 0.80159 0.75052 1.90636 1.29977 1.72093 1.54167 1.48385 1.08693 1.05306 1.72269 1.22295 0.88978 0.88566 1.00790 1.22764 0.93564 0.98607 1.00001 1.22528 0.96992 0.89869 0.85946 1.22476 0.86204 0.91019 1.01237 1.20950 0.83944 0.96539 0.93372 1.44310 1.02350 1.70853 1.16030 1.19430 0.91830 1.37617 0.89752 0.90977 1.25819 1.00187 1.00178 0.97732 1.70098 1.35334 1.48087 1.04711 0.85432 0.79897 0.78931 0.76805 1.20100 1.22538 1.19780 1.21750 0.98854 0.94808 0.86458 1.23169 0.84067 0.99911 0.95741 1.87689 1.31702 1.77204 1.33066 1.20528 0.86152 0.93471 1.01505 1.20544 0.93072 0.96927 1.03711 1.43728 1.04204 1.07901 1.55354 1.22462 1.02892 0.78015 1.04962 0.89458 0.91032 0.89483 0.84338 0.90851 0.90090 0.89379 0.87439 0.91953 0.91411 0.97753 0.91317 0.94133 0.96276 0.90809 0.86292 0.93445 0.90099 0.90192 0.88593 0.89411 0.87681 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.64 9.81 71.23 0.70 -0.94 16 2 C 0.01 0.31 6.85 40.98 0.28 0.59 16 3 C -0.20 -6.78 9.29 23.62 0.22 -6.56 16 4 C -0.27 -9.67 6.22 -19.04 -0.12 -9.79 16 5 C 0.60 23.48 7.83 86.62 0.68 24.16 16 6 O -0.59 -24.19 15.09 -4.11 -0.06 -24.26 16 7 N -0.61 -23.11 3.33 -815.82 -2.72 -25.83 16 8 C 0.12 3.83 6.90 86.98 0.60 4.43 16 9 C -0.11 -3.72 6.23 31.89 0.20 -3.52 16 10 C 0.09 3.45 0.80 -10.22 -0.01 3.44 16 11 C 0.11 4.41 4.08 86.48 0.35 4.76 16 12 C 0.18 8.46 3.92 86.07 0.34 8.80 16 13 N -0.61 -29.54 2.96 -698.64 -2.07 -31.61 16 14 C -0.26 -13.35 9.66 84.03 0.81 -12.54 16 15 H 0.07 3.60 7.85 -2.91 -0.02 3.58 16 16 C -0.04 -2.34 5.10 84.86 0.43 -1.91 16 17 N -0.94 -53.72 10.96 21.65 0.24 -53.48 16 18 Si 0.96 43.12 29.56 68.60 2.03 45.15 16 19 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 22 C 0.11 4.27 6.72 86.34 0.58 4.84 16 23 C 0.05 1.65 6.76 72.07 0.49 2.13 16 24 O -0.38 -14.22 10.26 -148.97 -1.53 -15.75 16 25 C 0.10 2.92 6.89 41.78 0.29 3.21 16 26 C -0.09 -1.92 9.58 71.23 0.68 -1.23 16 27 N -0.44 -10.19 3.09 -518.64 -1.60 -11.79 16 28 C 0.06 0.66 10.40 127.77 1.33 1.99 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.09 1.30 7.60 -2.38 -0.02 1.28 16 32 H 0.14 5.24 4.84 -2.91 -0.01 5.23 16 33 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.08 2.55 8.09 -2.39 -0.02 2.53 16 35 H 0.09 2.98 8.01 -2.39 -0.02 2.96 16 36 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 37 H 0.06 2.73 6.17 -2.39 -0.01 2.72 16 38 H 0.07 2.65 5.04 -2.39 -0.01 2.64 16 39 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.07 3.67 5.96 -2.39 -0.01 3.66 16 41 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 42 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.07 2.74 7.96 -2.39 -0.02 2.72 16 44 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 45 H 0.05 1.62 6.22 -2.39 -0.01 1.61 16 46 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.08 2.20 6.36 -2.39 -0.02 2.18 16 48 H 0.10 1.40 6.92 -2.39 -0.02 1.38 16 49 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.10 0.82 6.87 -2.39 -0.02 0.80 16 51 H 0.10 0.84 7.52 -2.39 -0.02 0.82 16 Total: -1.00 -71.29 390.60 3.08 -68.21 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.94 Total: 27.49 kcal Atomic # 6 Polarization: 14.02 SS G_CDS: 7.85 Total: 21.87 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -6.15 Total: -122.71 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -1.59 Total: -40.00 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -71.29 3.08 -68.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972669239.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.958 kcal (2) G-P(sol) polarization free energy of solvation -71.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds