Wall clock time and date at job start Wed Apr 1 2020 04:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35688 * 117.00175 * 2 1 4 4 C 1.38893 * 119.62303 * 180.29884 * 3 2 1 5 5 C 1.39574 * 118.94405 * 180.22887 * 4 3 2 6 6 C 1.48156 * 120.89283 * 179.75141 * 5 4 3 7 7 O 1.21516 * 120.00044 * 179.72229 * 6 5 4 8 8 N 1.34780 * 120.00115 * 359.45184 * 6 5 4 9 9 C 1.46501 * 120.00073 * 180.27306 * 8 6 5 10 10 H 1.08995 * 109.47270 * 324.99725 * 9 8 6 11 11 C 1.53001 * 109.47093 * 84.99701 * 9 8 6 12 12 C 1.52993 * 109.46880 * 204.99657 * 9 8 6 13 13 C 1.53048 * 109.46222 * 300.02559 * 12 9 8 14 14 C 1.53194 * 109.31378 * 178.59831 * 13 12 9 15 15 N 1.46928 * 108.76050 * 54.66079 * 14 13 12 16 16 C 1.36935 * 120.63316 * 126.40474 * 15 14 13 17 17 H 1.08003 * 119.99564 * 331.82179 * 16 15 14 18 18 C 1.38813 * 120.00156 * 151.81901 * 16 15 14 19 19 N 1.31619 * 120.00279 * 343.08104 * 18 16 15 20 20 Si 1.86807 * 119.99810 * 163.08054 * 18 16 15 21 21 H 1.48502 * 109.46929 * 60.00097 * 20 18 16 22 22 H 1.48504 * 109.46833 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47142 * 300.00061 * 20 18 16 24 24 C 1.46927 * 118.73854 * 306.37928 * 15 14 13 25 25 C 1.53042 * 109.46116 * 179.97438 * 12 9 8 26 26 C 1.39968 * 118.21387 * 359.48243 * 5 4 3 27 27 C 1.37979 * 119.13909 * 0.27479 * 26 5 4 28 28 C 1.50692 * 119.51252 * 180.02562 * 27 26 5 29 29 N 1.31905 * 120.97205 * 359.97438 * 27 26 5 30 30 H 1.08994 * 109.47048 * 300.00006 * 1 2 3 31 31 H 1.08999 * 109.46708 * 59.99862 * 1 2 3 32 32 H 1.08998 * 109.46959 * 179.97438 * 1 2 3 33 33 H 1.07997 * 120.53186 * 359.97438 * 4 3 2 34 34 H 0.96997 * 119.99832 * 0.26980 * 8 6 5 35 35 H 1.09004 * 109.46899 * 59.99989 * 11 9 8 36 36 H 1.08997 * 109.47175 * 179.97438 * 11 9 8 37 37 H 1.09000 * 109.47391 * 300.00116 * 11 9 8 38 38 H 1.08997 * 109.46487 * 60.00028 * 12 9 8 39 39 H 1.08993 * 109.49577 * 298.56978 * 13 12 9 40 40 H 1.09003 * 109.49491 * 58.66348 * 13 12 9 41 41 H 1.08991 * 109.60068 * 294.87717 * 14 13 12 42 42 H 1.08994 * 109.70213 * 174.50667 * 14 13 12 43 43 H 0.96993 * 120.00334 * 179.97438 * 19 18 16 44 44 H 1.09005 * 109.58941 * 293.82418 * 24 15 14 45 45 H 1.09001 * 109.70658 * 173.46857 * 24 15 14 46 46 H 1.09005 * 109.49369 * 301.33681 * 25 12 9 47 47 H 1.09001 * 109.49747 * 61.39953 * 25 12 9 48 48 H 1.08008 * 120.43167 * 180.25200 * 26 5 4 49 49 H 1.08997 * 109.47459 * 89.99866 * 28 27 26 50 50 H 1.09002 * 109.47070 * 209.99794 * 28 27 26 51 51 H 1.08996 * 109.47468 * 329.99557 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 3.4325 1.2725 -0.0063 5 6 4.0515 2.5235 -0.0013 6 6 5.5283 2.6415 -0.0022 7 8 6.0502 3.7389 -0.0029 8 7 6.2931 1.5317 0.0033 9 6 7.7534 1.6485 0.0085 10 1 8.0508 2.5151 -0.5819 11 6 8.2464 1.8179 1.4470 12 6 8.3682 0.3844 -0.5957 13 6 7.9500 -0.8323 0.2332 14 6 8.5385 -2.0997 -0.3948 15 7 9.9920 -1.9305 -0.5269 16 6 10.8527 -2.8600 -0.0071 17 1 10.5599 -3.4466 0.8513 18 6 12.1015 -3.0485 -0.5833 19 7 12.3408 -2.5993 -1.7971 20 14 13.4424 -3.9397 0.3640 21 1 12.9869 -5.3148 0.6911 22 1 14.6716 -4.0103 -0.4662 23 1 13.7343 -3.2031 1.6199 24 6 10.5045 -0.7452 -1.2278 25 6 9.8937 0.5068 -0.5908 26 6 3.2394 3.6635 -0.0013 27 6 1.8680 3.5116 -0.0004 28 6 0.9858 4.7332 -0.0009 29 7 1.3179 2.3127 0.0000 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 4.0231 0.3683 -0.0108 34 1 5.8766 0.6557 0.0039 35 1 7.9491 0.9512 2.0374 36 1 9.3329 1.9043 1.4509 37 1 7.8084 2.7184 1.8775 38 1 8.0169 0.2638 -1.6204 39 1 8.3225 -0.7240 1.2517 40 1 6.8626 -0.9055 0.2488 41 1 8.0982 -2.2583 -1.3792 42 1 8.3270 -2.9580 0.2427 43 1 13.2134 -2.7307 -2.1996 44 1 10.2245 -0.7935 -2.2802 45 1 11.5903 -0.7072 -1.1401 46 1 10.1898 1.3870 -1.1617 47 1 10.2476 0.6030 0.4357 48 1 3.6806 4.6494 -0.0016 49 1 0.7725 5.0270 -1.0287 50 1 0.0518 4.5072 0.5137 51 1 1.4948 5.5493 0.5120 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997737071.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:31 Heat of formation + Delta-G solvation = -23.575215 kcal Electronic energy + Delta-G solvation = -30726.366148 eV Core-core repulsion = 26626.497070 eV Total energy + Delta-G solvation = -4099.869078 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.24323 -39.92991 -38.43994 -37.87743 -35.38679 -33.82816 -32.68484 -32.11835 -31.10655 -29.81054 -28.89101 -28.70707 -26.95056 -25.59015 -24.71607 -23.12237 -23.06257 -22.30070 -20.78731 -20.27934 -18.90427 -18.57604 -17.33056 -17.02204 -16.63429 -16.42488 -16.02374 -15.76635 -15.14055 -14.85936 -14.57331 -14.45399 -14.40337 -14.22574 -13.88325 -13.64588 -13.49455 -13.12058 -12.88744 -12.78718 -12.66966 -12.52081 -12.49991 -12.15597 -12.05108 -11.68954 -11.43477 -11.38626 -11.26101 -10.92131 -10.71538 -10.48060 -10.45633 -10.21363 -10.19898 -10.12751 -10.00408 -9.87269 -9.53350 -9.43233 -9.07996 -8.81326 -8.46488 -6.66847 -5.78889 -3.21453 0.36393 0.76899 2.64293 2.66698 2.98071 3.38090 3.44093 3.45192 3.47353 3.73563 4.32546 4.49495 4.51939 4.65325 4.74381 4.92254 4.97250 4.97536 5.04891 5.11643 5.13615 5.19165 5.28382 5.30761 5.38759 5.50042 5.51267 5.56622 5.63679 5.69761 5.72684 5.81928 5.96674 5.99419 6.08714 6.12874 6.25233 6.35692 6.38282 6.49702 6.61808 6.71379 6.75581 6.80348 6.83436 6.97680 7.34958 7.39275 7.43597 7.66194 7.79173 8.01708 8.45331 9.21578 9.85063 10.41903 11.29557 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018323 B = 0.002191 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.730167 B =12775.870827 C =13858.088133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.304 6.304 3 C 0.324 3.676 4 C -0.166 4.166 5 C -0.046 4.046 6 C 0.558 3.442 7 O -0.529 6.529 8 N -0.710 5.710 9 C 0.145 3.855 10 H 0.087 0.913 11 C -0.163 4.163 12 C -0.086 4.086 13 C -0.130 4.130 14 C 0.146 3.854 15 N -0.591 5.591 16 C -0.252 4.252 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.171 3.829 25 C -0.134 4.134 26 C -0.155 4.155 27 C 0.164 3.836 28 C -0.104 4.104 29 N -0.528 5.528 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.147 0.853 34 H 0.401 0.599 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.043 0.957 41 H 0.016 0.984 42 H 0.053 0.947 43 H 0.254 0.746 44 H 0.017 0.983 45 H 0.088 0.912 46 H 0.050 0.950 47 H 0.061 0.939 48 H 0.150 0.850 49 H 0.082 0.918 50 H 0.079 0.921 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.052 11.764 3.785 26.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.211 6.211 3 C 0.145 3.855 4 C -0.187 4.187 5 C -0.056 4.056 6 C 0.343 3.657 7 O -0.406 6.406 8 N -0.362 5.362 9 C 0.041 3.959 10 H 0.105 0.895 11 C -0.221 4.221 12 C -0.105 4.105 13 C -0.169 4.169 14 C 0.019 3.981 15 N -0.314 5.314 16 C -0.382 4.382 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.732 3.268 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.210 1.210 24 C 0.046 3.954 25 C -0.173 4.173 26 C -0.176 4.176 27 C 0.028 3.972 28 C -0.162 4.162 29 N -0.254 5.254 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.164 0.836 34 H 0.238 0.762 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.061 0.939 41 H 0.034 0.966 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.035 0.965 45 H 0.106 0.894 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.168 0.832 49 H 0.101 0.899 50 H 0.097 0.903 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.272 12.143 3.680 26.506 hybrid contribution 1.104 -0.872 0.371 1.455 sum -22.168 11.271 4.051 25.196 Atomic orbital electron populations 1.22885 0.76955 1.03173 1.02458 1.86279 1.23117 1.24013 1.87691 1.19592 0.88929 0.84720 0.92225 1.21208 0.92482 0.98572 1.06486 1.20234 0.94117 0.93106 0.98187 1.18054 0.85692 0.84884 0.77066 1.90777 1.74078 1.26297 1.49473 1.46199 1.07848 1.08571 1.73585 1.21220 0.77320 0.99852 0.97495 0.89536 1.22233 1.02175 1.01658 0.96022 1.21339 0.97361 0.92632 0.99144 1.22133 0.97822 0.96762 1.00169 1.20874 0.86122 0.94163 0.96936 1.44027 0.99320 1.21955 1.66092 1.19130 0.95998 1.15365 1.07722 0.91814 1.25045 0.99726 0.99670 0.95206 1.70016 1.22306 1.49990 1.12422 0.86381 0.81542 0.79617 0.79290 1.20919 1.21659 1.21037 1.20762 0.99610 0.82539 0.92527 1.22263 0.92897 1.00401 1.01763 1.21929 0.93210 0.99872 1.02579 1.20903 0.91656 0.91881 0.92798 1.20765 0.99092 0.92744 1.03556 1.66990 1.41220 0.98484 1.18684 0.92240 0.92229 0.88408 0.83567 0.76228 0.92011 0.90807 0.92911 0.91309 0.91577 0.93891 0.96636 0.92860 0.93585 0.96526 0.89423 0.93120 0.91994 0.83180 0.89907 0.90252 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.38 101.05 1.05 1.33 16 2 O -0.30 -3.11 10.47 -18.77 -0.20 -3.30 16 3 C 0.32 3.54 7.49 -17.16 -0.13 3.41 16 4 C -0.17 -1.74 9.55 -38.84 -0.37 -2.11 16 5 C -0.05 -0.52 5.91 -104.68 -0.62 -1.14 16 6 C 0.56 7.37 7.76 -12.19 -0.09 7.27 16 7 O -0.53 -8.52 16.11 5.35 0.09 -8.44 16 8 N -0.71 -8.70 4.96 -54.65 -0.27 -8.97 16 9 C 0.14 1.99 2.40 -67.93 -0.16 1.83 16 10 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 11 C -0.16 -2.19 8.78 37.16 0.33 -1.86 16 12 C -0.09 -1.32 2.14 -90.58 -0.19 -1.52 16 13 C -0.13 -2.03 4.81 -26.61 -0.13 -2.16 16 14 C 0.15 2.90 6.52 -3.71 -0.02 2.88 16 15 N -0.59 -14.37 2.99 -172.32 -0.52 -14.88 16 16 C -0.25 -6.81 9.58 -15.06 -0.14 -6.95 16 17 H 0.06 1.69 7.89 -52.48 -0.41 1.28 16 18 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 19 N -0.90 -25.97 11.19 55.49 0.62 -25.34 16 20 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.17 3.96 5.30 -3.71 -0.02 3.94 16 25 C -0.13 -2.41 4.97 -26.61 -0.13 -2.54 16 26 C -0.15 -1.60 9.30 -39.03 -0.36 -1.96 16 27 C 0.16 1.54 6.77 -82.66 -0.56 0.98 16 28 C -0.10 -0.62 10.16 36.00 0.37 -0.25 16 29 N -0.53 -5.56 9.09 -9.60 -0.09 -5.65 16 30 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 32 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.15 1.30 6.53 -52.49 -0.34 0.95 16 34 H 0.40 4.23 4.98 -40.82 -0.20 4.03 16 35 H 0.06 0.81 6.46 -51.93 -0.34 0.48 16 36 H 0.07 1.01 6.46 -51.93 -0.34 0.67 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.08 6.51 -51.93 -0.34 0.74 16 40 H 0.04 0.55 6.46 -51.93 -0.34 0.21 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.09 2.29 6.07 -51.93 -0.31 1.98 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.06 1.13 6.51 -51.93 -0.34 0.79 16 48 H 0.15 1.43 7.74 -52.48 -0.41 1.03 16 49 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 51 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 LS Contribution 401.30 15.07 6.05 6.05 Total: -1.00 -31.83 401.30 -8.58 -40.41 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -7.95 Total: 2.51 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -1.29 Total: 1.13 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.25 Total: -54.84 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -0.11 Total: -11.74 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.83 -8.58 -40.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997737071.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.833 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds