Wall clock time and date at job start Wed Apr 1 2020 04:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35688 * 117.00175 * 2 1 4 4 C 1.38893 * 119.62303 * 180.29884 * 3 2 1 5 5 C 1.39574 * 118.94405 * 180.22887 * 4 3 2 6 6 C 1.48156 * 120.89283 * 179.75141 * 5 4 3 7 7 O 1.21516 * 120.00044 * 179.72229 * 6 5 4 8 8 N 1.34780 * 120.00115 * 359.45184 * 6 5 4 9 9 C 1.46501 * 120.00073 * 180.27306 * 8 6 5 10 10 H 1.08995 * 109.47270 * 324.99725 * 9 8 6 11 11 C 1.53001 * 109.47093 * 84.99701 * 9 8 6 12 12 C 1.52993 * 109.46880 * 204.99657 * 9 8 6 13 13 C 1.53048 * 109.46222 * 300.02559 * 12 9 8 14 14 C 1.53194 * 109.31378 * 178.59831 * 13 12 9 15 15 N 1.46928 * 108.76050 * 54.66079 * 14 13 12 16 16 C 1.36935 * 120.63316 * 126.40474 * 15 14 13 17 17 H 1.08003 * 119.99564 * 331.82179 * 16 15 14 18 18 C 1.38813 * 120.00156 * 151.81901 * 16 15 14 19 19 N 1.31619 * 120.00279 * 343.08104 * 18 16 15 20 20 Si 1.86807 * 119.99810 * 163.08054 * 18 16 15 21 21 H 1.48502 * 109.46929 * 60.00097 * 20 18 16 22 22 H 1.48504 * 109.46833 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47142 * 300.00061 * 20 18 16 24 24 C 1.46927 * 118.73854 * 306.37928 * 15 14 13 25 25 C 1.53042 * 109.46116 * 179.97438 * 12 9 8 26 26 C 1.39968 * 118.21387 * 359.48243 * 5 4 3 27 27 C 1.37979 * 119.13909 * 0.27479 * 26 5 4 28 28 C 1.50692 * 119.51252 * 180.02562 * 27 26 5 29 29 N 1.31905 * 120.97205 * 359.97438 * 27 26 5 30 30 H 1.08994 * 109.47048 * 300.00006 * 1 2 3 31 31 H 1.08999 * 109.46708 * 59.99862 * 1 2 3 32 32 H 1.08998 * 109.46959 * 179.97438 * 1 2 3 33 33 H 1.07997 * 120.53186 * 359.97438 * 4 3 2 34 34 H 0.96997 * 119.99832 * 0.26980 * 8 6 5 35 35 H 1.09004 * 109.46899 * 59.99989 * 11 9 8 36 36 H 1.08997 * 109.47175 * 179.97438 * 11 9 8 37 37 H 1.09000 * 109.47391 * 300.00116 * 11 9 8 38 38 H 1.08997 * 109.46487 * 60.00028 * 12 9 8 39 39 H 1.08993 * 109.49577 * 298.56978 * 13 12 9 40 40 H 1.09003 * 109.49491 * 58.66348 * 13 12 9 41 41 H 1.08991 * 109.60068 * 294.87717 * 14 13 12 42 42 H 1.08994 * 109.70213 * 174.50667 * 14 13 12 43 43 H 0.96993 * 120.00334 * 179.97438 * 19 18 16 44 44 H 1.09005 * 109.58941 * 293.82418 * 24 15 14 45 45 H 1.09001 * 109.70658 * 173.46857 * 24 15 14 46 46 H 1.09005 * 109.49369 * 301.33681 * 25 12 9 47 47 H 1.09001 * 109.49747 * 61.39953 * 25 12 9 48 48 H 1.08008 * 120.43167 * 180.25200 * 26 5 4 49 49 H 1.08997 * 109.47459 * 89.99866 * 28 27 26 50 50 H 1.09002 * 109.47070 * 209.99794 * 28 27 26 51 51 H 1.08996 * 109.47468 * 329.99557 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 3.4325 1.2725 -0.0063 5 6 4.0515 2.5235 -0.0013 6 6 5.5283 2.6415 -0.0022 7 8 6.0502 3.7389 -0.0029 8 7 6.2931 1.5317 0.0033 9 6 7.7534 1.6485 0.0085 10 1 8.0508 2.5151 -0.5819 11 6 8.2464 1.8179 1.4470 12 6 8.3682 0.3844 -0.5957 13 6 7.9500 -0.8323 0.2332 14 6 8.5385 -2.0997 -0.3948 15 7 9.9920 -1.9305 -0.5269 16 6 10.8527 -2.8600 -0.0071 17 1 10.5599 -3.4466 0.8513 18 6 12.1015 -3.0485 -0.5833 19 7 12.3408 -2.5993 -1.7971 20 14 13.4424 -3.9397 0.3640 21 1 12.9869 -5.3148 0.6911 22 1 14.6716 -4.0103 -0.4662 23 1 13.7343 -3.2031 1.6199 24 6 10.5045 -0.7452 -1.2278 25 6 9.8937 0.5068 -0.5908 26 6 3.2394 3.6635 -0.0013 27 6 1.8680 3.5116 -0.0004 28 6 0.9858 4.7332 -0.0009 29 7 1.3179 2.3127 0.0000 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 4.0231 0.3683 -0.0108 34 1 5.8766 0.6557 0.0039 35 1 7.9491 0.9512 2.0374 36 1 9.3329 1.9043 1.4509 37 1 7.8084 2.7184 1.8775 38 1 8.0169 0.2638 -1.6204 39 1 8.3225 -0.7240 1.2517 40 1 6.8626 -0.9055 0.2488 41 1 8.0982 -2.2583 -1.3792 42 1 8.3270 -2.9580 0.2427 43 1 13.2134 -2.7307 -2.1996 44 1 10.2245 -0.7935 -2.2802 45 1 11.5903 -0.7072 -1.1401 46 1 10.1898 1.3870 -1.1617 47 1 10.2476 0.6030 0.4357 48 1 3.6806 4.6494 -0.0016 49 1 0.7725 5.0270 -1.0287 50 1 0.0518 4.5072 0.5137 51 1 1.4948 5.5493 0.5120 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997737071.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:30 Heat of formation + Delta-G solvation = -44.320370 kcal Electronic energy + Delta-G solvation = -30727.265726 eV Core-core repulsion = 26626.497070 eV Total energy + Delta-G solvation = -4100.768655 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.05684 -40.96222 -39.58643 -38.85853 -36.85954 -34.86805 -34.09903 -32.85558 -32.62029 -31.41040 -30.30495 -29.30761 -27.57735 -27.15779 -25.88538 -24.53538 -23.85466 -23.76215 -22.21413 -21.36656 -20.22058 -19.56042 -18.58233 -18.12459 -17.85424 -17.13500 -16.97592 -16.84817 -16.55585 -16.15982 -15.69944 -15.60604 -15.39712 -15.27487 -15.16761 -14.99353 -14.69107 -14.33901 -14.12793 -14.07938 -13.65513 -13.37666 -13.31079 -13.06927 -13.02683 -12.94587 -12.89822 -12.66372 -12.58132 -12.48194 -12.15686 -12.03008 -11.96019 -11.66281 -11.65073 -11.41280 -11.13919 -11.02798 -10.96653 -10.77252 -10.50299 -10.18595 -9.54124 -8.64645 -7.85169 -5.30159 -0.46396 0.01401 1.47585 1.49834 1.56383 1.72375 1.85849 2.07962 2.52846 2.66342 3.07780 3.29167 3.45685 3.70178 3.78389 3.81691 3.87435 3.90607 3.99701 4.05280 4.36015 4.39525 4.41515 4.43899 4.44682 4.52858 4.60127 4.62374 4.73319 4.77063 4.78788 4.80110 4.86322 4.93115 4.95318 4.98616 5.03530 5.06628 5.14655 5.24103 5.28845 5.32448 5.35332 5.44299 5.45128 5.59333 5.68913 5.82244 6.13150 6.38064 6.41857 6.68833 7.01723 7.17804 7.90246 8.41291 9.20799 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018323 B = 0.002191 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.730167 B =12775.870827 C =13858.088133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.316 6.316 3 C 0.313 3.687 4 C -0.168 4.168 5 C -0.056 4.056 6 C 0.561 3.439 7 O -0.561 6.561 8 N -0.702 5.702 9 C 0.156 3.844 10 H 0.078 0.922 11 C -0.158 4.158 12 C -0.075 4.075 13 C -0.117 4.117 14 C 0.140 3.860 15 N -0.610 5.610 16 C -0.260 4.260 17 H 0.066 0.934 18 C -0.052 4.052 19 N -0.936 5.936 20 Si 0.964 3.036 21 H -0.276 1.276 22 H -0.296 1.296 23 H -0.278 1.278 24 C 0.177 3.823 25 C -0.121 4.121 26 C -0.161 4.161 27 C 0.163 3.837 28 C -0.102 4.102 29 N -0.535 5.535 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.121 0.879 33 H 0.161 0.839 34 H 0.411 0.589 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.012 0.988 42 H 0.054 0.946 43 H 0.249 0.751 44 H -0.007 1.007 45 H 0.051 0.949 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.155 0.845 49 H 0.095 0.905 50 H 0.084 0.916 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.166 12.198 5.012 28.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.223 6.223 3 C 0.134 3.866 4 C -0.189 4.189 5 C -0.067 4.067 6 C 0.348 3.652 7 O -0.441 6.441 8 N -0.354 5.354 9 C 0.052 3.948 10 H 0.096 0.904 11 C -0.216 4.216 12 C -0.095 4.095 13 C -0.156 4.156 14 C 0.014 3.986 15 N -0.333 5.333 16 C -0.390 4.390 17 H 0.084 0.916 18 C -0.248 4.248 19 N -0.582 5.582 20 Si 0.793 3.207 21 H -0.201 1.201 22 H -0.223 1.223 23 H -0.204 1.204 24 C 0.051 3.949 25 C -0.161 4.161 26 C -0.181 4.181 27 C 0.027 3.973 28 C -0.159 4.159 29 N -0.261 5.261 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.139 0.861 33 H 0.178 0.822 34 H 0.249 0.751 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.030 0.970 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.011 0.989 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.173 0.827 49 H 0.113 0.887 50 H 0.103 0.897 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -25.433 12.556 4.925 28.788 hybrid contribution 1.651 -1.024 -0.042 1.943 sum -23.782 11.531 4.882 26.878 Atomic orbital electron populations 1.23095 0.75495 1.04787 1.02462 1.86261 1.24631 1.23777 1.87589 1.19785 0.89266 0.85134 0.92427 1.21308 0.92655 0.98715 1.06246 1.20107 0.92976 0.93995 0.99605 1.18267 0.86420 0.84380 0.76152 1.90762 1.74802 1.27449 1.51057 1.46046 1.07100 1.09032 1.73208 1.20936 0.78151 0.98211 0.97477 0.90437 1.22182 1.01947 1.01867 0.95609 1.21179 0.95422 0.93564 0.99285 1.21991 0.99884 0.94281 0.99436 1.21063 0.83826 0.96546 0.97141 1.44304 1.01032 1.21957 1.66031 1.19473 0.96669 1.15281 1.07571 0.91590 1.25785 1.01827 1.01153 0.96005 1.70175 1.22309 1.51804 1.13923 0.85385 0.78625 0.78777 0.77934 1.20149 1.22258 1.20426 1.20560 0.97861 0.84693 0.91736 1.22052 0.94648 0.98086 1.01298 1.22090 0.93673 0.99859 1.02518 1.21415 0.91820 0.92573 0.91539 1.20874 0.98809 0.91642 1.04612 1.67075 1.41410 0.98794 1.18785 0.92158 0.92260 0.86064 0.82178 0.75053 0.91385 0.91119 0.93030 0.91539 0.91592 0.90081 0.97002 0.92772 0.94217 0.98941 0.93014 0.91740 0.91949 0.82737 0.88699 0.89709 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.38 113.37 1.18 1.62 16 2 O -0.32 -5.91 10.47 -90.06 -0.94 -6.86 16 3 C 0.31 6.33 7.49 84.80 0.63 6.96 16 4 C -0.17 -3.23 9.55 22.75 0.22 -3.01 16 5 C -0.06 -1.20 5.91 -19.90 -0.12 -1.31 16 6 C 0.56 13.98 7.76 86.88 0.67 14.65 16 7 O -0.56 -17.51 16.11 -3.77 -0.06 -17.58 16 8 N -0.70 -15.65 4.96 -445.12 -2.21 -17.86 16 9 C 0.16 4.00 2.40 44.99 0.11 4.11 16 10 H 0.08 2.20 7.58 -2.39 -0.02 2.18 16 11 C -0.16 -3.93 8.78 71.98 0.63 -3.30 16 12 C -0.08 -2.20 2.14 -10.77 -0.02 -2.23 16 13 C -0.12 -3.40 4.81 30.67 0.15 -3.25 16 14 C 0.14 5.43 6.52 86.36 0.56 5.99 16 15 N -0.61 -29.83 2.99 -699.10 -2.09 -31.93 16 16 C -0.26 -14.09 9.58 84.03 0.81 -13.29 16 17 H 0.07 3.48 7.89 -2.91 -0.02 3.46 16 18 C -0.05 -2.92 4.92 84.86 0.42 -2.51 16 19 N -0.94 -55.45 11.19 21.65 0.24 -55.21 16 20 Si 0.96 44.76 29.59 68.60 2.03 46.79 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 C 0.18 8.40 5.30 86.36 0.46 8.85 16 25 C -0.12 -4.31 4.97 30.67 0.15 -4.16 16 26 C -0.16 -3.07 9.30 22.63 0.21 -2.86 16 27 C 0.16 2.77 6.77 42.48 0.29 3.05 16 28 C -0.10 -0.97 10.16 71.23 0.72 -0.25 16 29 N -0.53 -10.39 9.09 -297.18 -2.70 -13.09 16 30 H 0.06 0.73 8.10 -2.39 -0.02 0.71 16 31 H 0.06 0.73 8.10 -2.39 -0.02 0.71 16 32 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.16 2.45 6.53 -2.91 -0.02 2.44 16 34 H 0.41 7.46 4.98 -92.71 -0.46 7.00 16 35 H 0.07 1.61 6.46 -2.38 -0.02 1.59 16 36 H 0.07 1.81 6.46 -2.39 -0.02 1.79 16 37 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.07 1.97 6.51 -2.39 -0.02 1.96 16 40 H 0.08 1.76 6.46 -2.39 -0.02 1.75 16 41 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 43 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 44 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 45 H 0.05 2.81 6.07 -2.39 -0.01 2.79 16 46 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 47 H 0.06 2.22 6.51 -2.39 -0.02 2.21 16 48 H 0.15 2.76 7.74 -2.91 -0.02 2.74 16 49 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.10 0.63 8.07 -2.39 -0.02 0.61 16 Total: -1.00 -69.86 401.30 1.82 -68.04 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.48 Total: 18.59 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 7.07 Total: 9.09 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -6.76 Total: -118.08 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -1.00 Total: -24.43 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -69.86 1.82 -68.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997737071.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.723 kcal (2) G-P(sol) polarization free energy of solvation -69.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds