Wall clock time and date at job start Wed Apr 1 2020 04:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35687 * 117.00054 * 2 1 4 4 C 1.38896 * 119.62212 * 179.97438 * 3 2 1 5 5 C 1.39575 * 118.94295 * 180.02562 * 4 3 2 6 6 C 1.48164 * 120.88954 * 180.02562 * 5 4 3 7 7 O 1.21512 * 120.00119 * 180.02562 * 6 5 4 8 8 N 1.34776 * 120.00017 * 359.97438 * 6 5 4 9 9 C 1.46500 * 120.00250 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46948 * 324.99960 * 9 8 6 11 11 C 1.52993 * 109.47339 * 84.99671 * 9 8 6 12 12 C 1.53000 * 109.47194 * 205.00359 * 9 8 6 13 13 H 1.09003 * 109.49496 * 299.92890 * 12 9 8 14 14 C 1.53037 * 109.52252 * 179.85222 * 12 9 8 15 15 C 1.53047 * 109.53795 * 178.66489 * 14 12 9 16 16 C 1.52754 * 109.38378 * 61.23712 * 15 14 12 17 17 N 1.46932 * 109.01099 * 305.59147 * 16 15 14 18 18 C 1.36931 * 120.62964 * 233.58902 * 17 16 15 19 19 H 1.08002 * 120.00075 * 152.35895 * 18 17 16 20 20 C 1.38813 * 120.00120 * 332.34384 * 18 17 16 21 21 N 1.31621 * 120.00027 * 342.76454 * 20 18 17 22 22 Si 1.86800 * 120.00058 * 162.47463 * 20 18 17 23 23 H 1.48507 * 109.46810 * 84.99183 * 22 20 18 24 24 H 1.48499 * 109.47476 * 204.98927 * 22 20 18 25 25 H 1.48496 * 109.47213 * 324.99479 * 22 20 18 26 26 C 1.46924 * 118.73758 * 53.30692 * 17 16 15 27 27 C 1.39962 * 118.22059 * 0.26706 * 5 4 3 28 28 C 1.37977 * 119.13364 * 359.44393 * 27 5 4 29 29 C 1.50702 * 119.51651 * 180.31513 * 28 27 5 30 30 N 1.31920 * 120.97455 * 0.57243 * 28 27 5 31 31 H 1.08998 * 109.47429 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47358 * 300.00029 * 1 2 3 33 33 H 1.09004 * 109.46975 * 59.99874 * 1 2 3 34 34 H 1.08001 * 120.52967 * 359.97438 * 4 3 2 35 35 H 0.97006 * 119.99886 * 0.02562 * 8 6 5 36 36 H 1.08999 * 109.47159 * 60.00694 * 11 9 8 37 37 H 1.09000 * 109.46976 * 180.02562 * 11 9 8 38 38 H 1.08993 * 109.47357 * 300.00050 * 11 9 8 39 39 H 1.09002 * 109.46301 * 298.67870 * 14 12 9 40 40 H 1.09001 * 109.46592 * 58.64626 * 14 12 9 41 41 H 1.08995 * 109.49608 * 181.31623 * 15 14 12 42 42 H 1.09006 * 109.49576 * 301.37707 * 15 14 12 43 43 H 1.08997 * 109.51067 * 185.71031 * 16 15 14 44 44 H 1.08997 * 109.43181 * 65.42668 * 16 15 14 45 45 H 0.96998 * 119.99813 * 179.72089 * 21 20 18 46 46 H 1.09004 * 109.58803 * 66.43223 * 26 17 16 47 47 H 1.08998 * 109.58539 * 186.71915 * 26 17 16 48 48 H 1.08002 * 120.43702 * 179.72985 * 27 5 4 49 49 H 1.09000 * 109.47016 * 270.25826 * 29 28 27 50 50 H 1.08999 * 109.46879 * 30.25862 * 29 28 27 51 51 H 1.09001 * 109.47254 * 150.25611 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2725 0.0005 5 6 4.0514 2.5235 0.0011 6 6 5.5283 2.6415 0.0011 7 8 6.0501 3.7389 0.0020 8 7 6.2930 1.5317 0.0011 9 6 7.7534 1.6483 0.0017 10 1 8.0487 2.5166 -0.5874 11 6 8.2512 1.8140 1.4388 12 6 8.3661 0.3859 -0.6081 13 1 8.0719 -0.4824 -0.0186 14 6 9.8915 0.5081 -0.6114 15 6 10.5060 -0.7683 -1.1907 16 6 10.0320 -0.9505 -2.6314 17 7 8.5632 -0.9208 -2.6594 18 6 7.8558 -1.9395 -3.2399 19 1 6.8562 -2.1655 -2.8989 20 6 8.4232 -2.6814 -4.2667 21 7 9.4724 -2.2173 -4.9119 22 14 7.7027 -4.3421 -4.7275 23 1 6.5800 -4.1475 -5.6800 24 1 8.7524 -5.1778 -5.3639 25 1 7.2028 -5.0212 -3.5052 26 6 7.8679 0.2195 -2.0472 27 6 3.2394 3.6636 0.0068 28 6 1.8681 3.5116 0.0000 29 6 0.9857 4.7333 -0.0012 30 7 1.3178 2.3127 -0.0005 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 4.0231 0.3683 0.0014 35 1 5.8764 0.6557 0.0007 36 1 7.9559 0.9458 2.0280 37 1 9.3377 1.9012 1.4392 38 1 7.8148 2.7133 1.8732 39 1 10.1862 1.3621 -1.2214 40 1 10.2467 0.6513 0.4091 41 1 11.5929 -0.6901 -1.1712 42 1 10.1922 -1.6258 -0.5953 43 1 10.3854 -1.9086 -3.0124 44 1 10.4256 -0.1422 -3.2476 45 1 9.8713 -2.7376 -5.6268 46 1 8.0815 1.1253 -2.6148 47 1 6.7938 0.0343 -2.0451 48 1 3.6805 4.6494 0.0118 49 1 0.7719 5.0280 1.0262 50 1 1.4950 5.5488 -0.5146 51 1 0.0520 4.5067 -0.5160 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025519828.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:46 Heat of formation + Delta-G solvation = -26.101434 kcal Electronic energy + Delta-G solvation = -31071.188218 eV Core-core repulsion = 26971.209595 eV Total energy + Delta-G solvation = -4099.978623 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.12506 -39.79867 -38.30214 -37.76130 -35.31897 -33.73160 -32.84611 -32.01493 -30.88093 -30.45764 -28.60799 -28.51053 -26.84851 -25.35125 -24.74289 -23.05185 -22.95570 -21.95005 -20.66026 -20.39226 -19.21561 -18.47551 -17.29422 -16.89703 -16.61963 -16.30832 -15.92008 -15.68227 -15.06351 -14.80283 -14.52554 -14.39239 -14.29946 -14.17456 -13.69979 -13.45072 -13.41503 -13.19854 -12.81261 -12.67105 -12.62381 -12.47968 -12.40734 -12.25550 -11.94039 -11.82977 -11.57373 -11.27457 -11.12629 -10.97557 -10.66265 -10.45454 -10.36688 -10.21230 -10.15178 -10.08902 -9.92253 -9.85184 -9.56299 -9.44570 -8.98964 -8.69495 -8.46140 -6.67510 -5.79088 -3.21316 0.48201 0.88551 2.75961 2.77356 3.07369 3.36901 3.43799 3.45651 3.58803 3.84628 4.42165 4.48230 4.63359 4.77532 4.85368 4.93420 5.03083 5.07596 5.15793 5.21523 5.24351 5.27428 5.35403 5.38384 5.39907 5.53021 5.57179 5.61622 5.66195 5.74054 5.78673 5.83628 5.99655 6.04784 6.07457 6.10914 6.27214 6.33423 6.40855 6.49366 6.60452 6.70049 6.78852 6.86686 6.95308 6.96755 7.40147 7.46151 7.54785 7.67335 7.78408 8.11500 8.44149 9.20810 9.84510 10.41082 11.29231 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009560 B = 0.003103 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.016171 B = 9020.259739 C =11167.365796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.304 6.304 3 C 0.324 3.676 4 C -0.164 4.164 5 C -0.045 4.045 6 C 0.560 3.440 7 O -0.530 6.530 8 N -0.708 5.708 9 C 0.147 3.853 10 H 0.089 0.911 11 C -0.162 4.162 12 C -0.112 4.112 13 H 0.072 0.928 14 C -0.101 4.101 15 C -0.142 4.142 16 C 0.168 3.832 17 N -0.591 5.591 18 C -0.253 4.253 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.901 3.099 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.155 3.845 27 C -0.155 4.155 28 C 0.162 3.838 29 C -0.104 4.104 30 N -0.528 5.528 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.148 0.852 35 H 0.402 0.598 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.086 0.914 44 H 0.016 0.984 45 H 0.254 0.746 46 H 0.017 0.983 47 H 0.050 0.950 48 H 0.150 0.850 49 H 0.081 0.919 50 H 0.081 0.919 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.170 9.730 13.630 21.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.210 6.210 3 C 0.145 3.855 4 C -0.185 4.185 5 C -0.056 4.056 6 C 0.346 3.654 7 O -0.407 6.407 8 N -0.358 5.358 9 C 0.043 3.957 10 H 0.107 0.893 11 C -0.220 4.220 12 C -0.132 4.132 13 H 0.091 0.909 14 C -0.139 4.139 15 C -0.181 4.181 16 C 0.043 3.957 17 N -0.313 5.313 18 C -0.383 4.383 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.730 3.270 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.028 3.972 27 C -0.176 4.176 28 C 0.026 3.974 29 C -0.161 4.161 30 N -0.254 5.254 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.165 0.835 35 H 0.238 0.762 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.105 0.895 44 H 0.034 0.966 45 H 0.064 0.936 46 H 0.035 0.965 47 H 0.069 0.931 48 H 0.168 0.832 49 H 0.100 0.900 50 H 0.099 0.901 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.469 10.057 13.459 21.534 hybrid contribution 0.091 -1.285 -0.358 1.337 sum -13.377 8.772 13.101 20.677 Atomic orbital electron populations 1.22875 0.77043 1.03124 1.02404 1.86286 1.23047 1.24021 1.87678 1.19592 0.88957 0.84690 0.92232 1.21232 0.92499 0.98641 1.06131 1.20209 0.94080 0.93084 0.98217 1.18012 0.85683 0.84793 0.76925 1.90767 1.74088 1.26288 1.49599 1.46049 1.07617 1.08650 1.73524 1.21136 0.77707 1.00176 0.96710 0.89304 1.22203 1.01821 1.01700 0.96258 1.21987 0.96338 0.95311 0.99611 0.90931 1.21442 0.93851 0.98912 0.99663 1.22104 0.98377 0.96589 1.01015 1.20709 0.83309 1.01733 0.89978 1.44019 1.01438 1.20056 1.65784 1.19138 0.99754 1.07608 1.11798 0.91785 1.25021 0.98772 0.99960 0.95839 1.70042 1.24672 1.36868 1.22994 0.86350 0.78174 0.84246 0.78209 1.21331 1.21569 1.20558 1.20861 0.95565 0.90986 0.89776 1.21908 0.93205 0.99836 1.02649 1.20890 0.91657 0.91867 0.92980 1.20757 0.99121 0.92797 1.03410 1.66988 1.41224 0.98478 1.18702 0.88467 0.92322 0.92206 0.83454 0.76187 0.92569 0.91083 0.92593 0.92538 0.93065 0.93178 0.92787 0.89538 0.96556 0.93638 0.96527 0.93145 0.83225 0.90029 0.90066 0.90276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.38 101.05 1.05 1.39 16 2 O -0.30 -3.58 10.47 -18.76 -0.20 -3.77 16 3 C 0.32 4.01 7.49 -17.16 -0.13 3.88 16 4 C -0.16 -1.96 9.55 -38.84 -0.37 -2.33 16 5 C -0.05 -0.57 5.91 -104.68 -0.62 -1.19 16 6 C 0.56 7.97 7.76 -12.18 -0.09 7.87 16 7 O -0.53 -8.95 16.11 5.36 0.09 -8.86 16 8 N -0.71 -9.37 4.43 -54.65 -0.24 -9.61 16 9 C 0.15 2.07 2.16 -67.93 -0.15 1.92 16 10 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 11 C -0.16 -1.97 9.14 37.15 0.34 -1.63 16 12 C -0.11 -1.79 1.97 -90.50 -0.18 -1.97 16 13 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 14 C -0.10 -1.61 4.86 -26.69 -0.13 -1.74 16 15 C -0.14 -2.62 6.06 -26.83 -0.16 -2.78 16 16 C 0.17 3.97 5.28 -3.93 -0.02 3.95 16 17 N -0.59 -14.51 3.00 -172.58 -0.52 -15.03 16 18 C -0.25 -6.86 9.58 -15.06 -0.14 -7.00 16 19 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 20 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 21 N -0.90 -26.10 11.18 55.49 0.62 -25.47 16 22 Si 0.90 21.54 29.59 -169.99 -5.03 16.51 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 26 C 0.15 3.15 5.56 -3.71 -0.02 3.13 16 27 C -0.16 -1.77 9.30 -39.03 -0.36 -2.14 16 28 C 0.16 1.71 6.77 -82.65 -0.56 1.15 16 29 C -0.10 -0.72 10.16 36.01 0.37 -0.35 16 30 N -0.53 -6.23 9.09 -9.59 -0.09 -6.32 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 33 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 34 H 0.15 1.56 6.53 -52.49 -0.34 1.22 16 35 H 0.40 4.77 6.56 -40.82 -0.27 4.50 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.81 6.41 -51.93 -0.33 0.48 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.70 6.37 -51.93 -0.33 0.37 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.09 2.29 6.03 -51.93 -0.31 1.98 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.05 1.00 7.44 -51.93 -0.39 0.61 16 48 H 0.15 1.58 7.74 -52.49 -0.41 1.17 16 49 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 50 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 51 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 406.73 15.07 6.13 6.13 Total: -1.00 -32.18 406.73 -8.74 -40.92 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -8.23 Total: 3.36 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -1.27 Total: 2.15 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.23 Total: -56.43 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.11 Total: -12.63 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.18 -8.74 -40.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025519828.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.815 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds