Wall clock time and date at job start Wed Apr 1 2020 04:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35687 * 117.00054 * 2 1 4 4 C 1.38896 * 119.62212 * 179.97438 * 3 2 1 5 5 C 1.39575 * 118.94295 * 180.02562 * 4 3 2 6 6 C 1.48164 * 120.88954 * 180.02562 * 5 4 3 7 7 O 1.21512 * 120.00119 * 180.02562 * 6 5 4 8 8 N 1.34776 * 120.00017 * 359.97438 * 6 5 4 9 9 C 1.46500 * 120.00250 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46948 * 324.99960 * 9 8 6 11 11 C 1.52993 * 109.47339 * 84.99671 * 9 8 6 12 12 C 1.53000 * 109.47194 * 205.00359 * 9 8 6 13 13 H 1.09003 * 109.49496 * 299.92890 * 12 9 8 14 14 C 1.53037 * 109.52252 * 179.85222 * 12 9 8 15 15 C 1.53047 * 109.53795 * 178.66489 * 14 12 9 16 16 C 1.52754 * 109.38378 * 61.23712 * 15 14 12 17 17 N 1.46932 * 109.01099 * 305.59147 * 16 15 14 18 18 C 1.36931 * 120.62964 * 233.58902 * 17 16 15 19 19 H 1.08002 * 120.00075 * 152.35895 * 18 17 16 20 20 C 1.38813 * 120.00120 * 332.34384 * 18 17 16 21 21 N 1.31621 * 120.00027 * 342.76454 * 20 18 17 22 22 Si 1.86800 * 120.00058 * 162.47463 * 20 18 17 23 23 H 1.48507 * 109.46810 * 84.99183 * 22 20 18 24 24 H 1.48499 * 109.47476 * 204.98927 * 22 20 18 25 25 H 1.48496 * 109.47213 * 324.99479 * 22 20 18 26 26 C 1.46924 * 118.73758 * 53.30692 * 17 16 15 27 27 C 1.39962 * 118.22059 * 0.26706 * 5 4 3 28 28 C 1.37977 * 119.13364 * 359.44393 * 27 5 4 29 29 C 1.50702 * 119.51651 * 180.31513 * 28 27 5 30 30 N 1.31920 * 120.97455 * 0.57243 * 28 27 5 31 31 H 1.08998 * 109.47429 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47358 * 300.00029 * 1 2 3 33 33 H 1.09004 * 109.46975 * 59.99874 * 1 2 3 34 34 H 1.08001 * 120.52967 * 359.97438 * 4 3 2 35 35 H 0.97006 * 119.99886 * 0.02562 * 8 6 5 36 36 H 1.08999 * 109.47159 * 60.00694 * 11 9 8 37 37 H 1.09000 * 109.46976 * 180.02562 * 11 9 8 38 38 H 1.08993 * 109.47357 * 300.00050 * 11 9 8 39 39 H 1.09002 * 109.46301 * 298.67870 * 14 12 9 40 40 H 1.09001 * 109.46592 * 58.64626 * 14 12 9 41 41 H 1.08995 * 109.49608 * 181.31623 * 15 14 12 42 42 H 1.09006 * 109.49576 * 301.37707 * 15 14 12 43 43 H 1.08997 * 109.51067 * 185.71031 * 16 15 14 44 44 H 1.08997 * 109.43181 * 65.42668 * 16 15 14 45 45 H 0.96998 * 119.99813 * 179.72089 * 21 20 18 46 46 H 1.09004 * 109.58803 * 66.43223 * 26 17 16 47 47 H 1.08998 * 109.58539 * 186.71915 * 26 17 16 48 48 H 1.08002 * 120.43702 * 179.72985 * 27 5 4 49 49 H 1.09000 * 109.47016 * 270.25826 * 29 28 27 50 50 H 1.08999 * 109.46879 * 30.25862 * 29 28 27 51 51 H 1.09001 * 109.47254 * 150.25611 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2725 0.0005 5 6 4.0514 2.5235 0.0011 6 6 5.5283 2.6415 0.0011 7 8 6.0501 3.7389 0.0020 8 7 6.2930 1.5317 0.0011 9 6 7.7534 1.6483 0.0017 10 1 8.0487 2.5166 -0.5874 11 6 8.2512 1.8140 1.4388 12 6 8.3661 0.3859 -0.6081 13 1 8.0719 -0.4824 -0.0186 14 6 9.8915 0.5081 -0.6114 15 6 10.5060 -0.7683 -1.1907 16 6 10.0320 -0.9505 -2.6314 17 7 8.5632 -0.9208 -2.6594 18 6 7.8558 -1.9395 -3.2399 19 1 6.8562 -2.1655 -2.8989 20 6 8.4232 -2.6814 -4.2667 21 7 9.4724 -2.2173 -4.9119 22 14 7.7027 -4.3421 -4.7275 23 1 6.5800 -4.1475 -5.6800 24 1 8.7524 -5.1778 -5.3639 25 1 7.2028 -5.0212 -3.5052 26 6 7.8679 0.2195 -2.0472 27 6 3.2394 3.6636 0.0068 28 6 1.8681 3.5116 0.0000 29 6 0.9857 4.7333 -0.0012 30 7 1.3178 2.3127 -0.0005 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 4.0231 0.3683 0.0014 35 1 5.8764 0.6557 0.0007 36 1 7.9559 0.9458 2.0280 37 1 9.3377 1.9012 1.4392 38 1 7.8148 2.7133 1.8732 39 1 10.1862 1.3621 -1.2214 40 1 10.2467 0.6513 0.4091 41 1 11.5929 -0.6901 -1.1712 42 1 10.1922 -1.6258 -0.5953 43 1 10.3854 -1.9086 -3.0124 44 1 10.4256 -0.1422 -3.2476 45 1 9.8713 -2.7376 -5.6268 46 1 8.0815 1.1253 -2.6148 47 1 6.7938 0.0343 -2.0451 48 1 3.6805 4.6494 0.0118 49 1 0.7719 5.0280 1.0262 50 1 1.4950 5.5488 -0.5146 51 1 0.0520 4.5067 -0.5160 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025519828.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:45 Heat of formation + Delta-G solvation = -47.084311 kcal Electronic energy + Delta-G solvation = -31072.098104 eV Core-core repulsion = 26971.209595 eV Total energy + Delta-G solvation = -4100.888509 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.04758 -40.90700 -39.52659 -38.86530 -36.77118 -34.94244 -34.24945 -32.84756 -32.48518 -32.00791 -29.90654 -29.31333 -27.59521 -27.14830 -25.90253 -24.38703 -23.80347 -23.61140 -22.03069 -21.51822 -20.65439 -19.47787 -18.69862 -18.13583 -17.81891 -17.14438 -16.92859 -16.88576 -16.64418 -16.10528 -15.89870 -15.49097 -15.35815 -15.18906 -15.00226 -14.93480 -14.69999 -14.34475 -14.13045 -14.03497 -13.71869 -13.40362 -13.32162 -13.25742 -13.06368 -13.01411 -12.77681 -12.67440 -12.61256 -12.28662 -12.22888 -12.03987 -11.97789 -11.76704 -11.53577 -11.44886 -11.20420 -11.06237 -11.02111 -10.76645 -10.52722 -10.15158 -9.54687 -8.67965 -7.86999 -5.32356 -0.46340 0.00855 1.46308 1.47751 1.56979 1.72707 1.87458 2.08521 2.50838 2.66214 3.07262 3.27484 3.44472 3.56675 3.78515 3.89420 3.92948 3.99630 4.00411 4.05242 4.34747 4.38454 4.40744 4.43058 4.44066 4.49038 4.55136 4.64301 4.74965 4.77775 4.78665 4.84364 4.86173 4.87657 4.93726 4.97350 5.03587 5.06686 5.11354 5.22726 5.27663 5.33812 5.35234 5.44851 5.50349 5.57916 5.67502 5.79407 6.12585 6.36631 6.40137 6.67912 7.01998 7.15011 7.86480 8.38148 9.19103 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009560 B = 0.003103 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.016171 B = 9020.259739 C =11167.365796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.317 6.317 3 C 0.312 3.688 4 C -0.170 4.170 5 C -0.056 4.056 6 C 0.562 3.438 7 O -0.561 6.561 8 N -0.703 5.703 9 C 0.154 3.846 10 H 0.071 0.929 11 C -0.153 4.153 12 C -0.095 4.095 13 H 0.080 0.920 14 C -0.097 4.097 15 C -0.130 4.130 16 C 0.172 3.828 17 N -0.608 5.608 18 C -0.262 4.262 19 H 0.068 0.932 20 C -0.052 4.052 21 N -0.936 5.936 22 Si 0.965 3.035 23 H -0.285 1.285 24 H -0.294 1.294 25 H -0.268 1.268 26 C 0.154 3.846 27 C -0.160 4.160 28 C 0.162 3.838 29 C -0.101 4.101 30 N -0.534 5.534 31 H 0.120 0.880 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.156 0.844 35 H 0.410 0.590 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.052 0.948 44 H -0.011 1.011 45 H 0.249 0.751 46 H -0.003 1.003 47 H 0.051 0.949 48 H 0.157 0.843 49 H 0.098 0.902 50 H 0.096 0.904 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.368 9.812 15.733 23.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.224 6.224 3 C 0.133 3.867 4 C -0.191 4.191 5 C -0.067 4.067 6 C 0.348 3.652 7 O -0.440 6.440 8 N -0.354 5.354 9 C 0.050 3.950 10 H 0.089 0.911 11 C -0.212 4.212 12 C -0.115 4.115 13 H 0.098 0.902 14 C -0.135 4.135 15 C -0.169 4.169 16 C 0.046 3.954 17 N -0.331 5.331 18 C -0.392 4.392 19 H 0.086 0.914 20 C -0.247 4.247 21 N -0.582 5.582 22 Si 0.793 3.207 23 H -0.212 1.212 24 H -0.220 1.220 25 H -0.193 1.193 26 C 0.028 3.972 27 C -0.181 4.181 28 C 0.026 3.974 29 C -0.158 4.158 30 N -0.260 5.260 31 H 0.139 0.861 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.174 0.826 35 H 0.247 0.753 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.108 0.892 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.007 0.993 45 H 0.058 0.942 46 H 0.015 0.985 47 H 0.069 0.931 48 H 0.174 0.826 49 H 0.116 0.884 50 H 0.115 0.885 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.690 10.130 15.593 23.697 hybrid contribution 0.390 -1.253 -1.053 1.682 sum -14.301 8.878 14.540 22.242 Atomic orbital electron populations 1.23095 0.75470 1.04755 1.02502 1.86265 1.24698 1.23876 1.87604 1.19773 0.89236 0.85158 0.92488 1.21304 0.92734 0.98742 1.06328 1.20133 0.93161 0.93910 0.99459 1.18219 0.86367 0.84391 0.76176 1.90746 1.74761 1.27315 1.51186 1.46011 1.07388 1.08949 1.73035 1.20990 0.78068 0.98119 0.97863 0.91100 1.22136 1.02532 1.02108 0.94375 1.21759 0.96678 0.96632 0.96461 0.90189 1.21444 0.93336 0.97168 1.01545 1.21932 0.99735 0.98057 0.97177 1.20558 0.83056 0.98804 0.92938 1.44289 1.01940 1.20853 1.66041 1.19511 1.00050 1.08154 1.11491 0.91383 1.25789 0.99502 1.03231 0.96179 1.70205 1.26271 1.38034 1.23707 0.85331 0.77148 0.80149 0.78052 1.21192 1.22006 1.19332 1.20969 0.95519 0.88710 0.91967 1.22092 0.93674 0.99821 1.02527 1.21457 0.91861 0.92597 0.91515 1.20874 0.98708 0.91519 1.04717 1.67082 1.41306 0.98748 1.18819 0.86142 0.91893 0.92386 0.82601 0.75309 0.91191 0.89751 0.93039 0.93039 0.89220 0.91142 0.92629 0.92964 0.99301 0.94198 0.98476 0.93069 0.82582 0.88398 0.88538 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.38 113.37 1.18 1.74 16 2 O -0.32 -7.19 10.47 -90.05 -0.94 -8.14 16 3 C 0.31 7.50 7.49 84.80 0.63 8.13 16 4 C -0.17 -3.98 9.55 22.75 0.22 -3.76 16 5 C -0.06 -1.39 5.91 -19.90 -0.12 -1.51 16 6 C 0.56 15.73 7.76 86.88 0.67 16.40 16 7 O -0.56 -18.80 16.11 -3.75 -0.06 -18.86 16 8 N -0.70 -17.94 4.43 -445.12 -1.97 -19.92 16 9 C 0.15 4.10 2.16 44.99 0.10 4.20 16 10 H 0.07 2.19 7.58 -2.39 -0.02 2.17 16 11 C -0.15 -3.29 9.14 71.98 0.66 -2.64 16 12 C -0.09 -2.90 1.97 -10.72 -0.02 -2.92 16 13 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 14 C -0.10 -2.88 4.86 30.62 0.15 -2.73 16 15 C -0.13 -4.64 6.06 30.53 0.19 -4.46 16 16 C 0.17 8.30 5.28 86.22 0.46 8.75 16 17 N -0.61 -30.34 3.00 -699.93 -2.10 -32.44 16 18 C -0.26 -14.33 9.58 84.03 0.81 -13.52 16 19 H 0.07 3.59 7.89 -2.91 -0.02 3.57 16 20 C -0.05 -2.90 4.91 84.86 0.42 -2.49 16 21 N -0.94 -55.94 11.18 21.65 0.24 -55.70 16 22 Si 0.97 44.83 29.59 68.60 2.03 46.86 16 23 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 26 C 0.15 6.29 5.56 86.36 0.48 6.77 16 27 C -0.16 -3.53 9.30 22.63 0.21 -3.32 16 28 C 0.16 3.20 6.77 42.48 0.29 3.49 16 29 C -0.10 -1.18 10.16 71.24 0.72 -0.46 16 30 N -0.53 -12.00 9.09 -297.16 -2.70 -14.70 16 31 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 33 H 0.06 0.91 8.10 -2.38 -0.02 0.89 16 34 H 0.16 3.21 6.53 -2.91 -0.02 3.19 16 35 H 0.41 9.24 6.56 -92.70 -0.61 8.63 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 1.60 6.41 -2.39 -0.02 1.58 16 38 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.09 2.06 6.37 -2.39 -0.02 2.04 16 41 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.05 2.86 6.03 -2.39 -0.01 2.85 16 44 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 45 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 46 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 47 H 0.05 2.03 7.44 -2.39 -0.02 2.02 16 48 H 0.16 3.17 7.74 -2.91 -0.02 3.14 16 49 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.10 0.85 8.08 -2.39 -0.02 0.83 16 51 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -71.26 406.73 1.85 -69.41 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.33 Total: 21.80 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 7.03 Total: 11.69 kcal Atomic # 7 Polarization: -116.22 SS G_CDS: -6.53 Total: -122.76 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -1.00 Total: -27.00 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -71.26 1.85 -69.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025519828.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.326 kcal (2) G-P(sol) polarization free energy of solvation -71.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds