Wall clock time and date at job start Wed Apr 1 2020 04:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35689 * 116.99604 * 2 1 4 4 C 1.38903 * 119.61703 * 179.97438 * 3 2 1 5 5 C 1.39567 * 118.94129 * 179.97438 * 4 3 2 6 6 C 1.48161 * 120.88882 * 179.72443 * 5 4 3 7 7 O 1.21520 * 120.00044 * 180.02562 * 6 5 4 8 8 N 1.34778 * 120.00241 * 0.02562 * 6 5 4 9 9 C 1.46495 * 120.00056 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.47542 * 34.99338 * 9 8 6 11 11 C 1.53009 * 109.46699 * 274.99735 * 9 8 6 12 12 C 1.52998 * 109.47390 * 154.99856 * 9 8 6 13 13 H 1.08994 * 109.49772 * 305.06359 * 12 9 8 14 14 C 1.53042 * 109.50102 * 184.99473 * 12 9 8 15 15 C 1.53035 * 109.53873 * 178.68156 * 14 12 9 16 16 C 1.53198 * 109.31291 * 61.36842 * 15 14 12 17 17 N 1.46934 * 108.77294 * 305.36660 * 16 15 14 18 18 C 1.36933 * 120.62347 * 233.58763 * 17 16 15 19 19 H 1.08003 * 119.99922 * 151.83449 * 18 17 16 20 20 C 1.38810 * 120.00691 * 331.82853 * 18 17 16 21 21 N 1.31623 * 119.99781 * 343.08593 * 20 18 17 22 22 Si 1.86795 * 120.00530 * 163.08382 * 20 18 17 23 23 H 1.48506 * 109.47163 * 90.00003 * 22 20 18 24 24 H 1.48494 * 109.47474 * 210.00015 * 22 20 18 25 25 H 1.48499 * 109.47265 * 330.00169 * 22 20 18 26 26 C 1.46920 * 118.74007 * 53.60650 * 17 16 15 27 27 C 1.39968 * 118.21914 * 359.97438 * 5 4 3 28 28 C 1.37974 * 119.13583 * 359.97438 * 27 5 4 29 29 C 1.50703 * 119.51377 * 180.02562 * 28 27 5 30 30 N 1.31913 * 120.97589 * 0.02562 * 28 27 5 31 31 H 1.08999 * 109.47143 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47531 * 300.00334 * 1 2 3 33 33 H 1.09002 * 109.47192 * 60.00816 * 1 2 3 34 34 H 1.07992 * 120.52886 * 359.97438 * 4 3 2 35 35 H 0.97001 * 119.99617 * 0.02562 * 8 6 5 36 36 H 1.08996 * 109.47371 * 299.99645 * 11 9 8 37 37 H 1.08996 * 109.47166 * 60.00401 * 11 9 8 38 38 H 1.09008 * 109.46677 * 180.02562 * 11 9 8 39 39 H 1.08997 * 109.46323 * 298.70708 * 14 12 9 40 40 H 1.09000 * 109.45294 * 58.67804 * 14 12 9 41 41 H 1.08996 * 109.49700 * 181.31850 * 15 14 12 42 42 H 1.09003 * 109.50181 * 301.38553 * 15 14 12 43 43 H 1.08999 * 109.58601 * 65.14849 * 16 15 14 44 44 H 1.08997 * 109.58645 * 185.57693 * 16 15 14 45 45 H 0.96998 * 119.99921 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.58389 * 186.60480 * 26 17 16 47 47 H 1.08996 * 109.58556 * 66.18064 * 26 17 16 48 48 H 1.08005 * 120.43231 * 180.02562 * 27 5 4 49 49 H 1.09000 * 109.46726 * 269.98005 * 29 28 27 50 50 H 1.09005 * 109.46726 * 29.98003 * 29 28 27 51 51 H 1.08994 * 109.47025 * 149.97806 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4325 1.2726 0.0005 5 6 4.0513 2.5235 0.0000 6 6 5.5282 2.6416 0.0066 7 8 6.0501 3.7390 0.0065 8 7 6.2930 1.5318 0.0128 9 6 7.7532 1.6485 0.0200 10 1 8.0454 2.5179 0.6090 11 6 8.2588 1.8114 -1.4150 12 6 8.3628 0.3873 0.6353 13 1 7.9346 0.2214 1.6238 14 6 9.8785 0.5597 0.7576 15 6 10.4851 -0.6881 1.4032 16 6 10.2071 -1.9046 0.5144 17 7 8.7604 -1.9928 0.2727 18 6 8.0777 -3.1491 0.5405 19 1 7.0311 -3.1096 0.8042 20 6 8.7306 -4.3723 0.4729 21 7 9.8825 -4.4695 -0.1564 22 14 7.9745 -5.8802 1.2752 23 1 7.0987 -6.5746 0.2973 24 1 9.0536 -6.8010 1.7142 25 1 7.1698 -5.4640 2.4518 26 6 8.0606 -0.8169 -0.2622 27 6 3.2393 3.6636 -0.0016 28 6 1.8680 3.5116 -0.0032 29 6 0.9856 4.7333 -0.0055 30 7 1.3178 2.3127 -0.0026 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3634 0.5137 -0.8901 34 1 4.0230 0.3684 0.0014 35 1 5.8764 0.6558 0.0125 36 1 7.9667 0.9421 -2.0040 37 1 7.8246 2.7100 -1.8533 38 1 9.3454 1.8978 -1.4097 39 1 10.3090 0.7015 -0.2337 40 1 10.0961 1.4305 1.3759 41 1 11.5615 -0.5551 1.5113 42 1 10.0375 -0.8442 2.3847 43 1 10.7299 -1.7904 -0.4352 44 1 10.5496 -2.8096 1.0160 45 1 10.3385 -5.3243 -0.2039 46 1 6.9869 -1.0043 -0.2729 47 1 8.4084 -0.6141 -1.2751 48 1 3.6804 4.6495 -0.0025 49 1 0.7713 5.0286 1.0216 50 1 1.4952 5.5485 -0.5193 51 1 0.0522 4.5063 -0.5206 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025519829.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:50 Heat of formation + Delta-G solvation = -24.273957 kcal Electronic energy + Delta-G solvation = -31051.801396 eV Core-core repulsion = 26951.902018 eV Total energy + Delta-G solvation = -4099.899378 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.14747 -39.83999 -38.36052 -37.82331 -35.27417 -33.74584 -32.85870 -32.03677 -30.89046 -30.47376 -28.61767 -28.13001 -26.85829 -25.32541 -25.01801 -23.33828 -22.97516 -22.17706 -20.73670 -20.17818 -18.90806 -18.41614 -17.23825 -16.97618 -16.60184 -16.31997 -15.93378 -15.63286 -15.08229 -14.90467 -14.52072 -14.46473 -14.33647 -14.22402 -13.88299 -13.54284 -13.41866 -13.12285 -12.79299 -12.70620 -12.52448 -12.44057 -12.37751 -12.27666 -11.94767 -11.83195 -11.65779 -11.29235 -11.01700 -10.92828 -10.59914 -10.50366 -10.39289 -10.21916 -10.11913 -10.10886 -9.91409 -9.85402 -9.62120 -9.41747 -9.01665 -8.71414 -8.47910 -6.67852 -5.81095 -3.23806 0.45624 0.86237 2.74464 2.75142 3.06311 3.35637 3.43113 3.45178 3.56192 3.82491 4.40817 4.47031 4.61221 4.76096 4.83231 4.98718 5.03114 5.07109 5.14040 5.19284 5.21496 5.25114 5.37018 5.37979 5.39490 5.54154 5.59389 5.63557 5.66318 5.68610 5.81081 5.83847 5.97960 6.05033 6.10826 6.19899 6.22738 6.31020 6.45356 6.54850 6.58590 6.68601 6.75351 6.84869 6.94406 6.95578 7.38369 7.45305 7.52829 7.65632 7.76934 8.08957 8.42632 9.18886 9.82353 10.39041 11.27182 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010300 B = 0.003009 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.703046 B = 9302.772261 C =11683.223194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.303 6.303 3 C 0.325 3.675 4 C -0.164 4.164 5 C -0.046 4.046 6 C 0.559 3.441 7 O -0.532 6.532 8 N -0.709 5.709 9 C 0.149 3.851 10 H 0.085 0.915 11 C -0.166 4.166 12 C -0.114 4.114 13 H 0.073 0.927 14 C -0.100 4.100 15 C -0.142 4.142 16 C 0.170 3.830 17 N -0.590 5.590 18 C -0.254 4.254 19 H 0.064 0.936 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.900 3.100 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.151 3.849 27 C -0.156 4.156 28 C 0.162 3.838 29 C -0.103 4.103 30 N -0.528 5.528 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.149 0.851 35 H 0.404 0.596 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.018 0.982 44 H 0.086 0.914 45 H 0.254 0.746 46 H 0.046 0.954 47 H 0.027 0.973 48 H 0.150 0.850 49 H 0.082 0.918 50 H 0.080 0.920 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.251 15.664 0.024 21.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.209 6.209 3 C 0.146 3.854 4 C -0.186 4.186 5 C -0.057 4.057 6 C 0.345 3.655 7 O -0.410 6.410 8 N -0.360 5.360 9 C 0.045 3.955 10 H 0.103 0.897 11 C -0.224 4.224 12 C -0.135 4.135 13 H 0.091 0.909 14 C -0.138 4.138 15 C -0.182 4.182 16 C 0.044 3.956 17 N -0.313 5.313 18 C -0.384 4.384 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.546 5.546 22 Si 0.730 3.270 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.024 3.976 27 C -0.177 4.177 28 C 0.026 3.974 29 C -0.161 4.161 30 N -0.254 5.254 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.166 0.834 35 H 0.240 0.760 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.036 0.964 44 H 0.104 0.896 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.044 0.956 48 H 0.168 0.832 49 H 0.100 0.900 50 H 0.099 0.901 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.536 15.899 -0.005 21.543 hybrid contribution 0.087 -1.268 0.398 1.332 sum -14.449 14.631 0.393 20.567 Atomic orbital electron populations 1.22881 0.77025 1.03182 1.02369 1.86303 1.23056 1.23947 1.87608 1.19603 0.88960 0.84699 0.92151 1.21264 0.92556 0.98699 1.06035 1.20212 0.94076 0.93085 0.98313 1.18042 0.85710 0.84812 0.76969 1.90763 1.74119 1.26303 1.49772 1.46151 1.07736 1.08752 1.73382 1.21120 0.77590 0.99449 0.97353 0.89739 1.22269 1.01720 1.02059 0.96312 1.21976 0.96435 0.94430 1.00641 0.90875 1.21415 0.94074 0.97765 1.00544 1.22182 0.98490 0.97151 1.00349 1.20792 0.84090 0.95287 0.95420 1.44011 1.04460 1.09118 1.73681 1.19140 0.95112 0.83720 1.40407 0.91809 1.25031 0.97818 0.97487 0.99170 1.70034 1.17339 1.24417 1.42764 0.86333 0.78264 0.82946 0.79448 1.21376 1.21573 1.20477 1.21000 0.95755 0.86821 0.94020 1.21903 0.93202 0.99798 1.02761 1.20889 0.91651 0.91877 0.93008 1.20756 0.99082 0.92764 1.03475 1.66988 1.41227 0.98472 1.18708 0.88414 0.92272 0.92273 0.83359 0.75957 0.91459 0.92814 0.91195 0.92185 0.93497 0.93199 0.92798 0.96429 0.89608 0.93630 0.93551 0.95572 0.83248 0.89986 0.90107 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.38 101.05 1.05 1.39 16 2 O -0.30 -3.59 10.47 -18.77 -0.20 -3.79 16 3 C 0.33 4.00 7.49 -17.16 -0.13 3.87 16 4 C -0.16 -1.97 9.55 -38.84 -0.37 -2.34 16 5 C -0.05 -0.57 5.91 -104.68 -0.62 -1.19 16 6 C 0.56 7.83 7.76 -12.18 -0.09 7.73 16 7 O -0.53 -8.77 16.11 5.35 0.09 -8.68 16 8 N -0.71 -9.49 4.97 -54.65 -0.27 -9.76 16 9 C 0.15 2.11 2.35 -67.93 -0.16 1.95 16 10 H 0.08 1.25 7.58 -51.93 -0.39 0.86 16 11 C -0.17 -2.26 8.76 37.16 0.33 -1.94 16 12 C -0.11 -1.84 2.27 -90.50 -0.21 -2.05 16 13 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 14 C -0.10 -1.60 4.89 -26.69 -0.13 -1.73 16 15 C -0.14 -2.64 6.08 -26.61 -0.16 -2.80 16 16 C 0.17 3.94 5.30 -3.70 -0.02 3.92 16 17 N -0.59 -14.17 2.99 -172.32 -0.52 -14.68 16 18 C -0.25 -6.76 9.58 -15.06 -0.14 -6.91 16 19 H 0.06 1.66 7.89 -52.48 -0.41 1.24 16 20 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 21 N -0.90 -25.73 11.20 55.49 0.62 -25.11 16 22 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 C 0.15 2.91 5.26 -3.71 -0.02 2.89 16 27 C -0.16 -1.73 9.30 -39.03 -0.36 -2.09 16 28 C 0.16 1.66 6.77 -82.65 -0.56 1.10 16 29 C -0.10 -0.68 10.16 36.01 0.37 -0.32 16 30 N -0.53 -6.12 9.09 -9.59 -0.09 -6.21 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 33 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 34 H 0.15 1.62 6.53 -52.49 -0.34 1.28 16 35 H 0.40 5.05 5.42 -40.82 -0.22 4.83 16 36 H 0.07 0.95 6.23 -51.93 -0.32 0.63 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.91 6.59 -51.92 -0.34 0.57 16 39 H 0.06 0.95 6.63 -51.93 -0.34 0.60 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 2.25 6.06 -51.93 -0.31 1.93 16 45 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.05 0.86 6.75 -51.93 -0.35 0.51 16 47 H 0.03 0.52 6.06 -51.93 -0.31 0.21 16 48 H 0.15 1.52 7.74 -52.48 -0.41 1.11 16 49 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.08 0.41 8.07 -51.93 -0.42 -0.01 16 51 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 401.82 15.07 6.06 6.06 Total: -1.00 -31.48 401.82 -8.63 -40.11 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -7.97 Total: 4.23 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.32 Total: 1.51 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.25 Total: -55.75 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.11 Total: -12.47 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.48 -8.63 -40.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025519829.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.838 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds