Wall clock time and date at job start Wed Apr 1 2020 04:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35689 * 116.99604 * 2 1 4 4 C 1.38903 * 119.61703 * 179.97438 * 3 2 1 5 5 C 1.39567 * 118.94129 * 179.97438 * 4 3 2 6 6 C 1.48161 * 120.88882 * 179.72443 * 5 4 3 7 7 O 1.21520 * 120.00044 * 180.02562 * 6 5 4 8 8 N 1.34778 * 120.00241 * 0.02562 * 6 5 4 9 9 C 1.46495 * 120.00056 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.47542 * 34.99338 * 9 8 6 11 11 C 1.53009 * 109.46699 * 274.99735 * 9 8 6 12 12 C 1.52998 * 109.47390 * 154.99856 * 9 8 6 13 13 H 1.08994 * 109.49772 * 305.06359 * 12 9 8 14 14 C 1.53042 * 109.50102 * 184.99473 * 12 9 8 15 15 C 1.53035 * 109.53873 * 178.68156 * 14 12 9 16 16 C 1.53198 * 109.31291 * 61.36842 * 15 14 12 17 17 N 1.46934 * 108.77294 * 305.36660 * 16 15 14 18 18 C 1.36933 * 120.62347 * 233.58763 * 17 16 15 19 19 H 1.08003 * 119.99922 * 151.83449 * 18 17 16 20 20 C 1.38810 * 120.00691 * 331.82853 * 18 17 16 21 21 N 1.31623 * 119.99781 * 343.08593 * 20 18 17 22 22 Si 1.86795 * 120.00530 * 163.08382 * 20 18 17 23 23 H 1.48506 * 109.47163 * 90.00003 * 22 20 18 24 24 H 1.48494 * 109.47474 * 210.00015 * 22 20 18 25 25 H 1.48499 * 109.47265 * 330.00169 * 22 20 18 26 26 C 1.46920 * 118.74007 * 53.60650 * 17 16 15 27 27 C 1.39968 * 118.21914 * 359.97438 * 5 4 3 28 28 C 1.37974 * 119.13583 * 359.97438 * 27 5 4 29 29 C 1.50703 * 119.51377 * 180.02562 * 28 27 5 30 30 N 1.31913 * 120.97589 * 0.02562 * 28 27 5 31 31 H 1.08999 * 109.47143 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47531 * 300.00334 * 1 2 3 33 33 H 1.09002 * 109.47192 * 60.00816 * 1 2 3 34 34 H 1.07992 * 120.52886 * 359.97438 * 4 3 2 35 35 H 0.97001 * 119.99617 * 0.02562 * 8 6 5 36 36 H 1.08996 * 109.47371 * 299.99645 * 11 9 8 37 37 H 1.08996 * 109.47166 * 60.00401 * 11 9 8 38 38 H 1.09008 * 109.46677 * 180.02562 * 11 9 8 39 39 H 1.08997 * 109.46323 * 298.70708 * 14 12 9 40 40 H 1.09000 * 109.45294 * 58.67804 * 14 12 9 41 41 H 1.08996 * 109.49700 * 181.31850 * 15 14 12 42 42 H 1.09003 * 109.50181 * 301.38553 * 15 14 12 43 43 H 1.08999 * 109.58601 * 65.14849 * 16 15 14 44 44 H 1.08997 * 109.58645 * 185.57693 * 16 15 14 45 45 H 0.96998 * 119.99921 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.58389 * 186.60480 * 26 17 16 47 47 H 1.08996 * 109.58556 * 66.18064 * 26 17 16 48 48 H 1.08005 * 120.43231 * 180.02562 * 27 5 4 49 49 H 1.09000 * 109.46726 * 269.98005 * 29 28 27 50 50 H 1.09005 * 109.46726 * 29.98003 * 29 28 27 51 51 H 1.08994 * 109.47025 * 149.97806 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4325 1.2726 0.0005 5 6 4.0513 2.5235 0.0000 6 6 5.5282 2.6416 0.0066 7 8 6.0501 3.7390 0.0065 8 7 6.2930 1.5318 0.0128 9 6 7.7532 1.6485 0.0200 10 1 8.0454 2.5179 0.6090 11 6 8.2588 1.8114 -1.4150 12 6 8.3628 0.3873 0.6353 13 1 7.9346 0.2214 1.6238 14 6 9.8785 0.5597 0.7576 15 6 10.4851 -0.6881 1.4032 16 6 10.2071 -1.9046 0.5144 17 7 8.7604 -1.9928 0.2727 18 6 8.0777 -3.1491 0.5405 19 1 7.0311 -3.1096 0.8042 20 6 8.7306 -4.3723 0.4729 21 7 9.8825 -4.4695 -0.1564 22 14 7.9745 -5.8802 1.2752 23 1 7.0987 -6.5746 0.2973 24 1 9.0536 -6.8010 1.7142 25 1 7.1698 -5.4640 2.4518 26 6 8.0606 -0.8169 -0.2622 27 6 3.2393 3.6636 -0.0016 28 6 1.8680 3.5116 -0.0032 29 6 0.9856 4.7333 -0.0055 30 7 1.3178 2.3127 -0.0026 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3634 0.5137 -0.8901 34 1 4.0230 0.3684 0.0014 35 1 5.8764 0.6558 0.0125 36 1 7.9667 0.9421 -2.0040 37 1 7.8246 2.7100 -1.8533 38 1 9.3454 1.8978 -1.4097 39 1 10.3090 0.7015 -0.2337 40 1 10.0961 1.4305 1.3759 41 1 11.5615 -0.5551 1.5113 42 1 10.0375 -0.8442 2.3847 43 1 10.7299 -1.7904 -0.4352 44 1 10.5496 -2.8096 1.0160 45 1 10.3385 -5.3243 -0.2039 46 1 6.9869 -1.0043 -0.2729 47 1 8.4084 -0.6141 -1.2751 48 1 3.6804 4.6495 -0.0025 49 1 0.7713 5.0286 1.0216 50 1 1.4952 5.5485 -0.5193 51 1 0.0522 4.5063 -0.5206 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025519829.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:49 Heat of formation + Delta-G solvation = -44.585662 kcal Electronic energy + Delta-G solvation = -31052.682178 eV Core-core repulsion = 26951.902018 eV Total energy + Delta-G solvation = -4100.780159 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.05730 -40.94670 -39.58962 -38.87166 -36.73046 -34.93560 -34.24590 -32.84757 -32.35479 -32.15551 -29.50647 -29.30704 -27.58470 -27.21402 -26.09042 -24.60109 -23.86854 -23.77801 -22.15463 -21.29757 -20.23207 -19.48238 -18.65174 -18.11713 -17.82969 -17.14655 -16.94834 -16.78921 -16.66176 -16.20885 -15.81470 -15.69112 -15.38914 -15.19686 -15.04607 -14.99800 -14.69238 -14.34034 -14.07879 -13.95212 -13.72367 -13.38069 -13.32367 -13.30176 -13.05882 -13.02849 -12.76757 -12.69023 -12.67431 -12.29678 -12.06378 -12.03145 -11.95789 -11.71399 -11.52905 -11.42695 -11.20539 -11.05587 -11.02867 -10.77533 -10.50777 -10.17001 -9.55021 -8.63282 -7.85607 -5.30365 -0.47061 0.00538 1.46453 1.48612 1.57474 1.71897 1.86929 2.07855 2.51883 2.65621 3.06955 3.29390 3.43828 3.60553 3.78250 3.89166 3.92163 3.99326 3.99770 4.05228 4.35588 4.37902 4.39078 4.42106 4.42717 4.47362 4.53962 4.65888 4.70305 4.74628 4.79379 4.85094 4.86471 4.88328 4.94840 4.98391 5.03847 5.06703 5.14762 5.20421 5.30399 5.35726 5.35958 5.43387 5.49975 5.59276 5.69437 5.81094 6.12762 6.35923 6.41358 6.67858 6.99426 7.17169 7.89059 8.40332 9.20413 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010300 B = 0.003009 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.703046 B = 9302.772261 C =11683.223194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.319 6.319 3 C 0.313 3.687 4 C -0.172 4.172 5 C -0.056 4.056 6 C 0.563 3.437 7 O -0.558 6.558 8 N -0.706 5.706 9 C 0.158 3.842 10 H 0.088 0.912 11 C -0.160 4.160 12 C -0.099 4.099 13 H 0.066 0.934 14 C -0.097 4.097 15 C -0.132 4.132 16 C 0.174 3.826 17 N -0.609 5.609 18 C -0.260 4.260 19 H 0.067 0.933 20 C -0.050 4.050 21 N -0.934 5.934 22 Si 0.962 3.038 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.271 1.271 26 C 0.150 3.850 27 C -0.158 4.158 28 C 0.163 3.837 29 C -0.101 4.101 30 N -0.533 5.533 31 H 0.119 0.881 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.152 0.848 35 H 0.408 0.592 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.048 0.952 43 H -0.003 1.003 44 H 0.049 0.951 45 H 0.249 0.751 46 H 0.050 0.950 47 H 0.025 0.975 48 H 0.159 0.841 49 H 0.096 0.904 50 H 0.098 0.902 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.675 17.415 0.563 23.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.226 6.226 3 C 0.134 3.866 4 C -0.194 4.194 5 C -0.066 4.066 6 C 0.350 3.650 7 O -0.437 6.437 8 N -0.357 5.357 9 C 0.054 3.946 10 H 0.106 0.894 11 C -0.218 4.218 12 C -0.119 4.119 13 H 0.085 0.915 14 C -0.135 4.135 15 C -0.171 4.171 16 C 0.048 3.952 17 N -0.332 5.332 18 C -0.390 4.390 19 H 0.085 0.915 20 C -0.245 4.245 21 N -0.580 5.580 22 Si 0.790 3.210 23 H -0.212 1.212 24 H -0.221 1.221 25 H -0.196 1.196 26 C 0.024 3.976 27 C -0.179 4.179 28 C 0.026 3.974 29 C -0.158 4.158 30 N -0.259 5.259 31 H 0.137 0.863 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.170 0.830 35 H 0.245 0.755 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.015 0.985 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.069 0.931 47 H 0.043 0.957 48 H 0.177 0.823 49 H 0.114 0.886 50 H 0.117 0.883 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.989 17.662 0.538 23.830 hybrid contribution 0.460 -1.771 0.198 1.840 sum -15.529 15.891 0.736 22.231 Atomic orbital electron populations 1.23096 0.75440 1.04718 1.02562 1.86279 1.24743 1.23982 1.87585 1.19765 0.89201 0.85151 0.92502 1.21299 0.92780 0.98765 1.06517 1.20127 0.93182 0.93814 0.99506 1.18211 0.86327 0.84331 0.76163 1.90745 1.74719 1.27116 1.51139 1.46116 1.07493 1.08998 1.73102 1.20969 0.77937 0.98171 0.97548 0.89444 1.22219 1.02294 1.01666 0.95652 1.21752 0.96943 0.93735 0.99490 0.91549 1.21410 0.93462 0.97390 1.01209 1.22015 1.00033 0.96058 0.98949 1.20619 0.83707 0.95941 0.94901 1.44268 1.04835 1.09743 1.74319 1.19487 0.95409 0.84828 1.39306 0.91529 1.25743 0.98495 1.00119 1.00168 1.70184 1.18767 1.24599 1.44480 0.85363 0.77275 0.79669 0.78668 1.21178 1.22108 1.19589 1.21131 0.95579 0.86438 0.94432 1.22100 0.93589 0.99799 1.02392 1.21480 0.91919 0.92556 0.91437 1.20880 0.98747 0.91519 1.04671 1.67084 1.41284 0.98746 1.18801 0.86287 0.92061 0.92034 0.83018 0.75488 0.92228 0.92766 0.90289 0.91636 0.90564 0.91217 0.93335 0.98513 0.93226 0.94226 0.93139 0.95736 0.82329 0.88598 0.88298 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.38 113.37 1.18 1.75 16 2 O -0.32 -7.37 10.47 -90.08 -0.94 -8.31 16 3 C 0.31 7.47 7.49 84.80 0.63 8.11 16 4 C -0.17 -4.04 9.55 22.75 0.22 -3.83 16 5 C -0.06 -1.33 5.91 -19.90 -0.12 -1.45 16 6 C 0.56 15.17 7.76 86.88 0.67 15.85 16 7 O -0.56 -17.67 16.11 -3.78 -0.06 -17.74 16 8 N -0.71 -18.11 4.97 -445.09 -2.21 -20.32 16 9 C 0.16 4.21 2.35 44.99 0.11 4.32 16 10 H 0.09 2.37 7.58 -2.39 -0.02 2.35 16 11 C -0.16 -4.12 8.76 71.99 0.63 -3.49 16 12 C -0.10 -3.03 2.27 -10.71 -0.02 -3.06 16 13 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 14 C -0.10 -2.89 4.89 30.62 0.15 -2.74 16 15 C -0.13 -4.73 6.08 30.67 0.19 -4.54 16 16 C 0.17 8.21 5.30 86.36 0.46 8.67 16 17 N -0.61 -29.45 2.99 -699.08 -2.09 -31.54 16 18 C -0.26 -13.96 9.58 84.03 0.81 -13.16 16 19 H 0.07 3.46 7.89 -2.91 -0.02 3.44 16 20 C -0.05 -2.75 4.92 84.86 0.42 -2.34 16 21 N -0.93 -54.87 11.20 21.65 0.24 -54.62 16 22 Si 0.96 44.50 29.59 68.60 2.03 46.53 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 C 0.15 5.70 5.26 86.37 0.45 6.16 16 27 C -0.16 -3.28 9.30 22.63 0.21 -3.07 16 28 C 0.16 3.04 6.77 42.48 0.29 3.33 16 29 C -0.10 -1.07 10.16 71.24 0.72 -0.34 16 30 N -0.53 -11.68 9.09 -297.17 -2.70 -14.38 16 31 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 33 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 34 H 0.15 3.30 6.53 -2.91 -0.02 3.28 16 35 H 0.41 9.88 5.42 -92.71 -0.50 9.38 16 36 H 0.06 1.62 6.23 -2.39 -0.01 1.60 16 37 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.08 1.88 6.59 -2.38 -0.02 1.87 16 39 H 0.07 1.91 6.63 -2.39 -0.02 1.90 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 44 H 0.05 2.69 6.06 -2.39 -0.01 2.67 16 45 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 46 H 0.05 1.85 6.75 -2.39 -0.02 1.83 16 47 H 0.02 0.96 6.06 -2.39 -0.01 0.95 16 48 H 0.16 2.94 7.74 -2.91 -0.02 2.92 16 49 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.10 0.71 8.07 -2.38 -0.02 0.69 16 51 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -68.34 401.82 1.69 -66.64 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.44 Total: 23.57 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 6.99 Total: 10.17 kcal Atomic # 7 Polarization: -114.10 SS G_CDS: -6.76 Total: -120.87 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -1.00 Total: -26.05 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -68.34 1.69 -66.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025519829.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.059 kcal (2) G-P(sol) polarization free energy of solvation -68.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds