Wall clock time and date at job start Wed Apr 1 2020 06:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34861 * 125.89183 * 2 1 4 4 C 1.40889 * 107.41638 * 180.29594 * 3 2 1 5 5 C 1.34854 * 107.41784 * 359.73426 * 4 3 2 6 6 C 1.50699 * 125.89064 * 180.02562 * 5 4 3 7 7 N 1.36338 * 108.21833 * 0.02562 * 5 4 3 8 8 C 1.46506 * 125.63536 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47052 * 359.97438 * 8 7 5 10 10 C 1.53003 * 109.47075 * 119.99902 * 8 7 5 11 11 C 1.50701 * 109.47162 * 239.99799 * 8 7 5 12 12 O 1.21286 * 119.99801 * 0.02562 * 11 8 7 13 13 N 1.34771 * 119.99981 * 180.02562 * 11 8 7 14 14 C 1.46504 * 119.99888 * 179.97438 * 13 11 8 15 15 H 1.08999 * 110.97239 * 37.69750 * 14 13 11 16 16 C 1.55017 * 111.10832 * 273.54501 * 14 13 11 17 17 O 1.43903 * 105.18344 * 206.03118 * 16 14 13 18 18 C 1.42402 * 109.55801 * 24.28930 * 17 16 14 19 19 C 1.52704 * 116.14002 * 129.84919 * 18 17 16 20 20 N 1.47210 * 87.86272 * 90.73415 * 19 18 17 21 21 C 1.36935 * 135.97302 * 206.39269 * 20 19 18 22 22 H 1.07997 * 120.00351 * 359.97438 * 21 20 19 23 23 C 1.38815 * 120.00246 * 179.97438 * 21 20 19 24 24 N 1.31624 * 119.99470 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00365 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46988 * 60.00300 * 25 23 21 27 27 H 1.48499 * 109.47164 * 179.97438 * 25 23 21 28 28 H 1.48489 * 109.47247 * 300.00345 * 25 23 21 29 29 C 1.47209 * 88.05579 * 26.42335 * 20 19 18 30 30 C 1.53659 * 108.53339 * 358.09243 * 18 17 16 31 31 H 1.09004 * 109.46577 * 270.15311 * 1 2 3 32 32 H 1.09002 * 109.47022 * 30.14822 * 1 2 3 33 33 H 1.09001 * 109.47405 * 150.15757 * 1 2 3 34 34 H 1.07999 * 126.28926 * 0.03122 * 3 2 1 35 35 H 1.07998 * 126.29053 * 179.73293 * 4 3 2 36 36 H 1.09006 * 109.47086 * 269.96029 * 6 5 4 37 37 H 1.08998 * 109.47265 * 29.96264 * 6 5 4 38 38 H 1.09002 * 109.47035 * 149.95923 * 6 5 4 39 39 H 1.09002 * 109.46786 * 179.97438 * 10 8 7 40 40 H 1.08997 * 109.46898 * 299.99858 * 10 8 7 41 41 H 1.09000 * 109.47208 * 60.00062 * 10 8 7 42 42 H 0.96995 * 120.00429 * 0.02562 * 13 11 8 43 43 H 1.09000 * 110.30114 * 87.10383 * 16 14 13 44 44 H 1.09001 * 110.29857 * 324.95813 * 16 14 13 45 45 H 1.09002 * 113.50144 * 335.96920 * 19 18 17 46 46 H 1.08997 * 113.49644 * 205.49348 * 19 18 17 47 47 H 0.97002 * 119.99761 * 180.02562 * 24 23 21 48 48 H 1.09001 * 113.49691 * 88.26969 * 29 20 19 49 49 H 1.08995 * 113.50212 * 218.74855 * 29 20 19 50 50 H 1.09002 * 110.93075 * 97.29470 * 30 18 17 51 51 H 1.09002 * 110.93025 * 220.95868 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2976 1.0925 0.0000 4 6 3.6339 0.6461 -0.0069 5 6 3.6090 -0.7022 -0.0050 6 6 4.8133 -1.6081 -0.0100 7 7 2.3063 -1.1045 0.0024 8 6 1.8421 -2.4941 0.0062 9 1 2.7017 -3.1643 0.0018 10 6 1.0031 -2.7481 1.2602 11 6 1.0025 -2.7466 -1.2196 12 8 0.8112 -1.8538 -2.0180 13 7 0.4643 -3.9644 -1.4285 14 6 -0.3524 -4.2096 -2.6198 15 1 0.0517 -3.6838 -3.4849 16 6 -1.8324 -3.8213 -2.3717 17 8 -2.5936 -4.6370 -3.2806 18 6 -1.8499 -5.8062 -3.6088 19 6 -2.5878 -7.1354 -3.4649 20 7 -3.0012 -6.9949 -4.8708 21 6 -4.0471 -7.4339 -5.6381 22 1 -4.8203 -8.0460 -5.1978 23 6 -4.1134 -7.0922 -6.9819 24 7 -3.1713 -6.3458 -7.5183 25 14 -5.5396 -7.6916 -8.0287 26 1 -6.8157 -7.1817 -7.4655 27 1 -5.3780 -7.1926 -9.4180 28 1 -5.5596 -9.1763 -8.0347 29 6 -1.7976 -6.1765 -5.0907 30 6 -0.4873 -5.7328 -2.9022 31 1 -0.3632 0.0027 1.0277 32 1 -0.3633 0.8887 -0.5161 33 1 -0.3634 -0.8914 -0.5114 34 1 1.9671 2.1207 0.0005 35 1 4.5160 1.2691 -0.0128 36 1 5.0979 -1.8285 -1.0389 37 1 5.6415 -1.1143 0.4983 38 1 4.5716 -2.5367 0.5070 39 1 0.6574 -3.7818 1.2628 40 1 1.6104 -2.5654 2.1467 41 1 0.1435 -2.0778 1.2642 42 1 0.6170 -4.6782 -0.7898 43 1 -1.9881 -2.7649 -2.5908 44 1 -2.1132 -4.0400 -1.3415 45 1 -3.4194 -7.0969 -2.7614 46 1 -1.9257 -7.9832 -3.2893 47 1 -3.2179 -6.1067 -8.4573 48 1 -0.9180 -6.7609 -5.3607 49 1 -1.9631 -5.3306 -5.7579 50 1 -0.4997 -6.3016 -1.9725 51 1 0.3109 -6.0794 -3.5586 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054015676.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:22 Heat of formation + Delta-G solvation = 40.167636 kcal Electronic energy + Delta-G solvation = -31287.028597 eV Core-core repulsion = 27189.923616 eV Total energy + Delta-G solvation = -4097.104981 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.85941 -40.33070 -39.27663 -36.40285 -34.84410 -34.44266 -32.78428 -32.13721 -30.71990 -29.54814 -29.17836 -28.14540 -25.77141 -25.03644 -24.79881 -24.26271 -22.43878 -21.61898 -21.00896 -20.51384 -19.13293 -18.97461 -17.52244 -16.88981 -16.68853 -16.17814 -15.71553 -15.44111 -15.14608 -14.90796 -14.58687 -14.46492 -14.04805 -13.68977 -13.55620 -13.51935 -13.44091 -13.32066 -13.20386 -13.13961 -12.83908 -12.78182 -12.56788 -12.26724 -12.04130 -11.99093 -11.93394 -11.83395 -11.62841 -11.34251 -11.23423 -11.09598 -10.80899 -10.53607 -10.28346 -10.14216 -9.88956 -9.49559 -9.29759 -8.82925 -8.71822 -8.69047 -7.84790 -6.88045 -5.73781 -3.06091 1.97402 2.18343 2.48111 2.91296 2.96345 3.42128 3.45692 3.47466 4.03206 4.13545 4.27258 4.31763 4.45305 4.49694 4.57703 4.86392 4.91547 4.97001 4.98810 5.01864 5.03707 5.18682 5.20451 5.22957 5.29722 5.38652 5.42592 5.46047 5.51549 5.59814 5.60088 5.70447 5.75693 5.79263 5.87100 5.91566 5.98091 6.18620 6.21892 6.31347 6.33095 6.49492 6.56961 6.89188 7.00366 7.04992 7.16457 7.19976 7.27714 7.51931 7.73837 7.82734 8.00396 9.05513 9.72631 10.64083 11.43987 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024370 B = 0.002097 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.679261 B =13346.187653 C =13504.896229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.048 3.952 3 C -0.206 4.206 4 C -0.191 4.191 5 C 0.005 3.995 6 C -0.083 4.083 7 N -0.426 5.426 8 C 0.113 3.887 9 H 0.122 0.878 10 C -0.164 4.164 11 C 0.500 3.500 12 O -0.506 6.506 13 N -0.713 5.713 14 C 0.113 3.887 15 H 0.108 0.892 16 C 0.042 3.958 17 O -0.331 6.331 18 C 0.057 3.943 19 C 0.113 3.887 20 N -0.602 5.602 21 C -0.216 4.216 22 H 0.081 0.919 23 C -0.008 4.008 24 N -0.920 5.920 25 Si 0.914 3.086 26 H -0.284 1.284 27 H -0.289 1.289 28 H -0.285 1.285 29 C 0.153 3.847 30 C -0.141 4.141 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.402 0.598 43 H 0.085 0.915 44 H 0.056 0.944 45 H 0.046 0.954 46 H 0.043 0.957 47 H 0.254 0.746 48 H 0.037 0.963 49 H 0.079 0.921 50 H 0.080 0.920 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.366 8.029 21.602 27.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.062 4.062 3 C -0.230 4.230 4 C -0.215 4.215 5 C -0.105 4.105 6 C -0.140 4.140 7 N -0.105 5.105 8 C 0.006 3.994 9 H 0.140 0.860 10 C -0.222 4.222 11 C 0.284 3.716 12 O -0.380 6.380 13 N -0.366 5.366 14 C 0.008 3.992 15 H 0.126 0.874 16 C -0.036 4.036 17 O -0.249 6.249 18 C 0.016 3.984 19 C -0.014 4.014 20 N -0.327 5.327 21 C -0.344 4.344 22 H 0.099 0.901 23 C -0.204 4.204 24 N -0.567 5.567 25 Si 0.744 3.256 26 H -0.210 1.210 27 H -0.215 1.215 28 H -0.212 1.212 29 C 0.027 3.973 30 C -0.180 4.180 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.236 0.764 43 H 0.103 0.897 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.064 0.936 48 H 0.054 0.946 49 H 0.097 0.903 50 H 0.098 0.902 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.675 8.348 20.584 26.623 hybrid contribution -0.358 -0.792 -0.311 0.923 sum 14.317 7.556 20.274 25.944 Atomic orbital electron populations 1.20468 0.88607 1.04081 1.01422 1.20171 0.93261 0.85354 1.07444 1.20597 0.92757 0.97322 1.12337 1.20588 0.97262 0.92694 1.10971 1.20228 0.84084 0.94726 1.11429 1.20290 0.93808 0.97475 1.02446 1.43524 1.05488 1.03777 1.57674 1.21209 0.99270 0.83861 0.95025 0.86039 1.22224 1.00829 1.03526 0.95619 1.20632 0.80539 0.83036 0.87436 1.90822 1.58766 1.42950 1.45479 1.45852 1.52422 1.12501 1.25827 1.22818 0.91239 0.96994 0.88161 0.87433 1.23735 0.89395 0.96441 0.94034 1.88503 1.40441 1.32310 1.63605 1.23397 0.88220 0.87470 0.99354 1.22677 0.96141 0.92933 0.89646 1.45363 1.22491 1.59868 1.05022 1.18841 0.98303 1.26764 0.90458 0.90137 1.24798 0.98628 1.00404 0.96620 1.69813 1.33864 1.40495 1.12496 0.86166 0.81715 0.78139 0.79532 1.21024 1.21525 1.21191 1.22390 0.89219 0.95023 0.90660 1.23138 0.99259 0.93829 1.01753 0.91844 0.90451 0.91099 0.84977 0.84965 0.91272 0.90234 0.92253 0.90042 0.90400 0.90524 0.76354 0.89672 0.92546 0.93615 0.93976 0.93573 0.94586 0.90319 0.90183 0.89093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.92 8.30 36.00 0.30 -0.62 16 2 C 0.05 0.57 5.76 -81.79 -0.47 0.10 16 3 C -0.21 -2.46 10.77 -39.78 -0.43 -2.89 16 4 C -0.19 -2.14 10.76 -39.78 -0.43 -2.57 16 5 C 0.00 0.05 6.89 -81.79 -0.56 -0.51 16 6 C -0.08 -0.58 9.93 36.01 0.36 -0.22 16 7 N -0.43 -4.55 2.40 -102.18 -0.25 -4.79 16 8 C 0.11 0.90 3.18 -69.08 -0.22 0.69 16 9 H 0.12 0.69 6.63 -51.93 -0.34 0.35 16 10 C -0.16 -0.92 9.11 37.16 0.34 -0.58 16 11 C 0.50 5.32 6.08 -10.99 -0.07 5.25 16 12 O -0.51 -7.67 13.64 5.55 0.08 -7.59 16 13 N -0.71 -6.37 5.13 -51.49 -0.26 -6.64 16 14 C 0.11 1.41 3.37 -65.54 -0.22 1.19 16 15 H 0.11 1.60 7.74 -51.93 -0.40 1.19 16 16 C 0.04 0.62 7.49 38.22 0.29 0.90 16 17 O -0.33 -6.61 11.17 -35.23 -0.39 -7.00 16 18 C 0.06 1.07 1.75 -90.52 -0.16 0.91 16 19 C 0.11 2.31 8.20 -8.07 -0.07 2.24 16 20 N -0.60 -15.90 3.79 -184.48 -0.70 -16.60 16 21 C -0.22 -6.25 10.74 -15.06 -0.16 -6.41 16 22 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 23 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 24 N -0.92 -28.00 11.51 55.49 0.64 -27.36 16 25 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 C 0.15 3.64 6.88 -8.00 -0.05 3.58 16 30 C -0.14 -1.80 6.03 -25.06 -0.15 -1.95 16 31 H 0.06 0.53 7.78 -51.93 -0.40 0.13 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.82 5.04 -51.93 -0.26 0.56 16 34 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.32 7.07 -51.93 -0.37 -0.05 16 39 H 0.08 0.27 7.56 -51.93 -0.39 -0.12 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.51 5.84 -51.93 -0.30 0.21 16 42 H 0.40 2.24 7.92 -40.82 -0.32 1.91 16 43 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.04 0.78 8.13 -51.93 -0.42 0.36 16 47 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 48 H 0.04 0.83 7.95 -51.93 -0.41 0.42 16 49 H 0.08 2.15 7.15 -51.93 -0.37 1.78 16 50 H 0.08 0.80 7.96 -51.93 -0.41 0.39 16 51 H 0.09 1.12 7.82 -51.93 -0.41 0.71 16 LS Contribution 403.11 15.07 6.07 6.07 Total: -1.00 -36.85 403.11 -9.82 -46.67 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -8.18 Total: 0.87 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -1.80 Total: -1.21 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.57 Total: -55.40 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.32 Total: -14.60 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.85 -9.82 -46.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054015676.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.838 kcal (2) G-P(sol) polarization free energy of solvation -36.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds