Wall clock time and date at job start Wed Apr 1 2020 06:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34861 * 125.89183 * 2 1 4 4 C 1.40889 * 107.41638 * 180.29594 * 3 2 1 5 5 C 1.34854 * 107.41784 * 359.73426 * 4 3 2 6 6 C 1.50699 * 125.89064 * 180.02562 * 5 4 3 7 7 N 1.36338 * 108.21833 * 0.02562 * 5 4 3 8 8 C 1.46506 * 125.63536 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47052 * 359.97438 * 8 7 5 10 10 C 1.53003 * 109.47075 * 119.99902 * 8 7 5 11 11 C 1.50701 * 109.47162 * 239.99799 * 8 7 5 12 12 O 1.21286 * 119.99801 * 0.02562 * 11 8 7 13 13 N 1.34771 * 119.99981 * 180.02562 * 11 8 7 14 14 C 1.46504 * 119.99888 * 179.97438 * 13 11 8 15 15 H 1.08999 * 110.97239 * 37.69750 * 14 13 11 16 16 C 1.55017 * 111.10832 * 273.54501 * 14 13 11 17 17 O 1.43903 * 105.18344 * 206.03118 * 16 14 13 18 18 C 1.42402 * 109.55801 * 24.28930 * 17 16 14 19 19 C 1.52704 * 116.14002 * 129.84919 * 18 17 16 20 20 N 1.47210 * 87.86272 * 90.73415 * 19 18 17 21 21 C 1.36935 * 135.97302 * 206.39269 * 20 19 18 22 22 H 1.07997 * 120.00351 * 359.97438 * 21 20 19 23 23 C 1.38815 * 120.00246 * 179.97438 * 21 20 19 24 24 N 1.31624 * 119.99470 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00365 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46988 * 60.00300 * 25 23 21 27 27 H 1.48499 * 109.47164 * 179.97438 * 25 23 21 28 28 H 1.48489 * 109.47247 * 300.00345 * 25 23 21 29 29 C 1.47209 * 88.05579 * 26.42335 * 20 19 18 30 30 C 1.53659 * 108.53339 * 358.09243 * 18 17 16 31 31 H 1.09004 * 109.46577 * 270.15311 * 1 2 3 32 32 H 1.09002 * 109.47022 * 30.14822 * 1 2 3 33 33 H 1.09001 * 109.47405 * 150.15757 * 1 2 3 34 34 H 1.07999 * 126.28926 * 0.03122 * 3 2 1 35 35 H 1.07998 * 126.29053 * 179.73293 * 4 3 2 36 36 H 1.09006 * 109.47086 * 269.96029 * 6 5 4 37 37 H 1.08998 * 109.47265 * 29.96264 * 6 5 4 38 38 H 1.09002 * 109.47035 * 149.95923 * 6 5 4 39 39 H 1.09002 * 109.46786 * 179.97438 * 10 8 7 40 40 H 1.08997 * 109.46898 * 299.99858 * 10 8 7 41 41 H 1.09000 * 109.47208 * 60.00062 * 10 8 7 42 42 H 0.96995 * 120.00429 * 0.02562 * 13 11 8 43 43 H 1.09000 * 110.30114 * 87.10383 * 16 14 13 44 44 H 1.09001 * 110.29857 * 324.95813 * 16 14 13 45 45 H 1.09002 * 113.50144 * 335.96920 * 19 18 17 46 46 H 1.08997 * 113.49644 * 205.49348 * 19 18 17 47 47 H 0.97002 * 119.99761 * 180.02562 * 24 23 21 48 48 H 1.09001 * 113.49691 * 88.26969 * 29 20 19 49 49 H 1.08995 * 113.50212 * 218.74855 * 29 20 19 50 50 H 1.09002 * 110.93075 * 97.29470 * 30 18 17 51 51 H 1.09002 * 110.93025 * 220.95868 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2976 1.0925 0.0000 4 6 3.6339 0.6461 -0.0069 5 6 3.6090 -0.7022 -0.0050 6 6 4.8133 -1.6081 -0.0100 7 7 2.3063 -1.1045 0.0024 8 6 1.8421 -2.4941 0.0062 9 1 2.7017 -3.1643 0.0018 10 6 1.0031 -2.7481 1.2602 11 6 1.0025 -2.7466 -1.2196 12 8 0.8112 -1.8538 -2.0180 13 7 0.4643 -3.9644 -1.4285 14 6 -0.3524 -4.2096 -2.6198 15 1 0.0517 -3.6838 -3.4849 16 6 -1.8324 -3.8213 -2.3717 17 8 -2.5936 -4.6370 -3.2806 18 6 -1.8499 -5.8062 -3.6088 19 6 -2.5878 -7.1354 -3.4649 20 7 -3.0012 -6.9949 -4.8708 21 6 -4.0471 -7.4339 -5.6381 22 1 -4.8203 -8.0460 -5.1978 23 6 -4.1134 -7.0922 -6.9819 24 7 -3.1713 -6.3458 -7.5183 25 14 -5.5396 -7.6916 -8.0287 26 1 -6.8157 -7.1817 -7.4655 27 1 -5.3780 -7.1926 -9.4180 28 1 -5.5596 -9.1763 -8.0347 29 6 -1.7976 -6.1765 -5.0907 30 6 -0.4873 -5.7328 -2.9022 31 1 -0.3632 0.0027 1.0277 32 1 -0.3633 0.8887 -0.5161 33 1 -0.3634 -0.8914 -0.5114 34 1 1.9671 2.1207 0.0005 35 1 4.5160 1.2691 -0.0128 36 1 5.0979 -1.8285 -1.0389 37 1 5.6415 -1.1143 0.4983 38 1 4.5716 -2.5367 0.5070 39 1 0.6574 -3.7818 1.2628 40 1 1.6104 -2.5654 2.1467 41 1 0.1435 -2.0778 1.2642 42 1 0.6170 -4.6782 -0.7898 43 1 -1.9881 -2.7649 -2.5908 44 1 -2.1132 -4.0400 -1.3415 45 1 -3.4194 -7.0969 -2.7614 46 1 -1.9257 -7.9832 -3.2893 47 1 -3.2179 -6.1067 -8.4573 48 1 -0.9180 -6.7609 -5.3607 49 1 -1.9631 -5.3306 -5.7579 50 1 -0.4997 -6.3016 -1.9725 51 1 0.3109 -6.0794 -3.5586 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054015676.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:21 Heat of formation + Delta-G solvation = 14.458936 kcal Electronic energy + Delta-G solvation = -31288.143410 eV Core-core repulsion = 27189.923616 eV Total energy + Delta-G solvation = -4098.219793 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.62794 -41.58583 -40.37262 -37.94914 -35.84832 -35.24096 -34.20313 -33.50342 -31.86230 -30.34587 -30.01480 -29.57193 -27.40440 -26.54467 -25.71856 -24.99957 -23.96167 -22.88217 -21.95659 -21.30259 -20.60856 -19.81463 -18.77926 -18.27803 -17.76788 -17.16061 -17.02808 -16.53336 -16.42256 -16.22104 -15.89954 -15.55478 -15.29494 -14.92417 -14.80472 -14.68963 -14.48459 -14.20441 -14.12465 -13.98156 -13.59773 -13.51153 -13.41507 -13.31613 -13.24120 -13.05386 -12.90899 -12.81817 -12.78151 -12.69674 -12.57194 -12.48723 -12.30641 -12.07456 -11.77491 -11.67934 -11.36043 -11.03591 -10.93788 -10.35597 -10.15482 -9.52116 -8.94599 -8.64254 -7.91758 -5.24695 1.17635 1.38063 1.42386 1.47320 1.53167 1.75107 2.11367 2.13805 2.46124 2.80209 3.23855 3.31579 3.44709 3.58152 3.62805 3.70026 3.75251 3.79884 3.91027 4.04455 4.14496 4.18004 4.36234 4.50562 4.57198 4.62853 4.63691 4.64873 4.69901 4.74170 4.76045 4.81852 4.82534 4.86143 4.87325 4.92513 4.95373 5.03816 5.12056 5.13843 5.17190 5.25585 5.32598 5.41673 5.48476 5.52152 5.91556 6.19854 6.29420 6.31579 6.36744 6.56812 6.88491 7.08044 7.58821 8.58791 9.26009 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024370 B = 0.002097 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.679261 B =13346.187653 C =13504.896229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.029 3.971 3 C -0.231 4.231 4 C -0.217 4.217 5 C 0.002 3.998 6 C -0.081 4.081 7 N -0.430 5.430 8 C 0.114 3.886 9 H 0.153 0.847 10 C -0.161 4.161 11 C 0.500 3.500 12 O -0.558 6.558 13 N -0.690 5.690 14 C 0.127 3.873 15 H 0.079 0.921 16 C 0.040 3.960 17 O -0.373 6.373 18 C 0.077 3.923 19 C 0.115 3.885 20 N -0.642 5.642 21 C -0.227 4.227 22 H 0.086 0.914 23 C -0.073 4.073 24 N -0.956 5.956 25 Si 0.982 3.018 26 H -0.278 1.278 27 H -0.295 1.295 28 H -0.271 1.271 29 C 0.144 3.856 30 C -0.122 4.122 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.134 0.866 35 H 0.143 0.857 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.424 0.576 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.048 0.952 46 H 0.077 0.923 47 H 0.247 0.753 48 H 0.041 0.959 49 H 0.028 0.972 50 H 0.127 0.873 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.589 5.872 24.715 30.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.082 4.082 3 C -0.255 4.255 4 C -0.241 4.241 5 C -0.108 4.108 6 C -0.139 4.139 7 N -0.108 5.108 8 C 0.008 3.992 9 H 0.171 0.829 10 C -0.218 4.218 11 C 0.286 3.714 12 O -0.435 6.435 13 N -0.345 5.345 14 C 0.021 3.979 15 H 0.097 0.903 16 C -0.038 4.038 17 O -0.291 6.291 18 C 0.035 3.965 19 C -0.010 4.010 20 N -0.368 5.368 21 C -0.356 4.356 22 H 0.104 0.896 23 C -0.266 4.266 24 N -0.605 5.605 25 Si 0.810 3.190 26 H -0.204 1.204 27 H -0.221 1.221 28 H -0.197 1.197 29 C 0.018 3.982 30 C -0.161 4.161 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.152 0.848 35 H 0.160 0.840 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.130 0.870 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.264 0.736 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.067 0.933 46 H 0.094 0.906 47 H 0.056 0.944 48 H 0.059 0.941 49 H 0.046 0.954 50 H 0.145 0.855 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 15.915 6.144 23.782 29.268 hybrid contribution -0.731 -0.059 -1.230 1.432 sum 15.183 6.085 22.552 27.859 Atomic orbital electron populations 1.20426 0.88134 1.03125 1.02313 1.20395 0.93869 0.86052 1.07930 1.20862 0.93640 0.97824 1.13176 1.20877 0.97347 0.93751 1.12147 1.20822 0.85060 0.95146 1.09818 1.20400 0.92634 0.97900 1.02928 1.43747 1.05434 1.04577 1.57084 1.21496 1.00248 0.83018 0.94420 0.82942 1.22272 1.00044 1.05072 0.94429 1.21174 0.80075 0.82546 0.87612 1.90821 1.60584 1.44645 1.47412 1.45543 1.51167 1.12878 1.24950 1.22361 0.90269 0.96559 0.88708 0.90328 1.23910 0.90379 0.95037 0.94430 1.88454 1.42385 1.33326 1.64966 1.23019 0.91034 0.86597 0.95809 1.22904 0.96820 0.94819 0.86439 1.45783 1.22752 1.60548 1.07698 1.19286 0.99284 1.25870 0.91117 0.89642 1.25711 1.01513 1.01260 0.98113 1.70035 1.35960 1.42327 1.12159 0.85093 0.78548 0.78159 0.77200 1.20400 1.22092 1.19711 1.22436 0.88702 0.93362 0.93659 1.23059 0.95481 0.94233 1.03300 0.89933 0.91173 0.92235 0.84844 0.83969 0.91313 0.88898 0.89968 0.86957 0.89396 0.91881 0.73626 0.91144 0.89498 0.93332 0.90560 0.94411 0.94121 0.95389 0.85532 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.72 8.30 71.23 0.59 -1.13 16 2 C 0.03 0.67 5.76 41.08 0.24 0.91 16 3 C -0.23 -5.65 10.77 22.14 0.24 -5.41 16 4 C -0.22 -4.83 10.76 22.14 0.24 -4.59 16 5 C 0.00 0.03 6.89 41.08 0.28 0.31 16 6 C -0.08 -0.90 9.93 71.24 0.71 -0.19 16 7 N -0.43 -8.50 2.40 -477.18 -1.15 -9.64 16 8 C 0.11 1.45 3.18 44.25 0.14 1.59 16 9 H 0.15 0.99 6.63 -2.39 -0.02 0.97 16 10 C -0.16 -1.15 9.11 71.98 0.66 -0.49 16 11 C 0.50 9.53 6.08 87.66 0.53 10.06 16 12 O -0.56 -16.80 13.64 -3.05 -0.04 -16.84 16 13 N -0.69 -9.85 5.13 -435.22 -2.23 -12.09 16 14 C 0.13 2.94 3.37 46.54 0.16 3.09 16 15 H 0.08 2.34 7.74 -2.39 -0.02 2.32 16 16 C 0.04 1.12 7.49 72.67 0.54 1.67 16 17 O -0.37 -14.87 11.17 -148.98 -1.66 -16.53 16 18 C 0.08 2.78 1.75 -10.72 -0.02 2.76 16 19 C 0.12 4.49 8.20 83.39 0.68 5.17 16 20 N -0.64 -34.22 3.79 -738.53 -2.80 -37.02 16 21 C -0.23 -13.32 10.74 84.03 0.90 -12.42 16 22 H 0.09 4.73 7.83 -2.91 -0.02 4.71 16 23 C -0.07 -4.38 5.50 84.86 0.47 -3.91 16 24 N -0.96 -60.65 11.51 21.65 0.25 -60.40 16 25 Si 0.98 47.47 29.55 68.60 2.03 49.50 16 26 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 27 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 28 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 29 C 0.14 7.03 6.88 83.43 0.57 7.61 16 30 C -0.12 -2.69 6.03 31.67 0.19 -2.50 16 31 H 0.08 1.32 7.78 -2.39 -0.02 1.31 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.37 5.04 -2.39 -0.01 1.36 16 34 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 35 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 0.52 7.07 -2.39 -0.02 0.51 16 39 H 0.11 0.11 7.56 -2.39 -0.02 0.09 16 40 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.06 0.66 5.84 -2.39 -0.01 0.65 16 42 H 0.42 2.29 7.92 -92.71 -0.73 1.56 16 43 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.08 2.50 8.13 -2.39 -0.02 2.48 16 47 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 48 H 0.04 1.91 7.95 -2.39 -0.02 1.89 16 49 H 0.03 1.62 7.15 -2.39 -0.02 1.60 16 50 H 0.13 1.71 7.96 -2.39 -0.02 1.69 16 51 H 0.10 2.13 7.82 -2.39 -0.02 2.11 16 Total: -1.00 -87.12 403.11 1.72 -85.40 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.20 Total: 15.10 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 7.12 Total: 2.53 kcal Atomic # 7 Polarization: -113.22 SS G_CDS: -5.93 Total: -119.15 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -1.71 Total: -33.38 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -87.12 1.72 -85.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054015676.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.859 kcal (2) G-P(sol) polarization free energy of solvation -87.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds