Wall clock time and date at job start Wed Apr 1 2020 06:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34854 * 125.89131 * 2 1 4 4 C 1.40889 * 107.41708 * 180.29540 * 3 2 1 5 5 C 1.34852 * 107.41793 * 359.73853 * 4 3 2 6 6 C 1.50698 * 125.89034 * 179.97438 * 5 4 3 7 7 N 1.36340 * 108.21874 * 359.97438 * 5 4 3 8 8 C 1.46502 * 125.63639 * 180.02562 * 7 5 4 9 9 H 1.08994 * 109.47258 * 0.02562 * 8 7 5 10 10 C 1.52998 * 109.47276 * 120.00383 * 8 7 5 11 11 C 1.50709 * 109.47028 * 240.00455 * 8 7 5 12 12 O 1.21284 * 119.99767 * 359.97438 * 11 8 7 13 13 N 1.34773 * 119.99753 * 180.02562 * 11 8 7 14 14 C 1.46506 * 119.99852 * 179.97438 * 13 11 8 15 15 H 1.08994 * 110.88299 * 322.92399 * 14 13 11 16 16 C 1.54459 * 110.82551 * 86.45054 * 14 13 11 17 17 O 1.43519 * 107.57625 * 139.58540 * 16 14 13 18 18 C 1.42539 * 109.64037 * 0.62867 * 17 16 14 19 19 C 1.52944 * 116.18239 * 207.22985 * 18 17 16 20 20 N 1.47773 * 85.80790 * 218.97490 * 19 18 17 21 21 C 1.36934 * 134.40694 * 203.90039 * 20 19 18 22 22 H 1.08000 * 120.00336 * 180.02562 * 21 20 19 23 23 C 1.38818 * 120.00208 * 0.02562 * 21 20 19 24 24 N 1.31619 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00206 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47251 * 59.99816 * 25 23 21 27 27 H 1.48503 * 109.46871 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.46895 * 299.99686 * 25 23 21 29 29 C 1.47769 * 91.18682 * 23.91613 * 20 19 18 30 30 C 1.53997 * 106.48997 * 336.97331 * 18 17 16 31 31 H 1.08997 * 109.47182 * 270.14825 * 1 2 3 32 32 H 1.09000 * 109.47124 * 30.15146 * 1 2 3 33 33 H 1.09004 * 109.46781 * 150.15102 * 1 2 3 34 34 H 1.07991 * 126.29246 * 0.03554 * 3 2 1 35 35 H 1.07999 * 126.29442 * 179.73753 * 4 3 2 36 36 H 1.08999 * 109.47298 * 270.04003 * 6 5 4 37 37 H 1.09000 * 109.47871 * 30.04207 * 6 5 4 38 38 H 1.09005 * 109.47254 * 150.03797 * 6 5 4 39 39 H 1.09002 * 109.47000 * 59.99970 * 10 8 7 40 40 H 1.09003 * 109.47291 * 179.97438 * 10 8 7 41 41 H 1.08997 * 109.47107 * 300.00213 * 10 8 7 42 42 H 0.96997 * 120.00329 * 359.97438 * 13 11 8 43 43 H 1.08998 * 109.83438 * 20.07813 * 16 14 13 44 44 H 1.09001 * 109.91289 * 259.14285 * 16 14 13 45 45 H 1.09003 * 113.81720 * 333.19511 * 19 18 17 46 46 H 1.08997 * 113.82459 * 104.74796 * 19 18 17 47 47 H 0.97003 * 119.99879 * 179.97438 * 24 23 21 48 48 H 1.09003 * 113.82142 * 221.87071 * 29 20 19 49 49 H 1.09003 * 113.93214 * 90.31920 * 29 20 19 50 50 H 1.09006 * 111.15629 * 153.02154 * 30 18 17 51 51 H 1.08997 * 111.15838 * 277.26139 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2975 1.0925 0.0000 4 6 3.6338 0.6461 -0.0069 5 6 3.6090 -0.7022 -0.0050 6 6 4.8133 -1.6080 -0.0112 7 7 2.3063 -1.1046 0.0034 8 6 1.8421 -2.4941 0.0086 9 1 2.7016 -3.1643 0.0051 10 6 1.0038 -2.7471 1.2632 11 6 1.0019 -2.7476 -1.2166 12 8 0.8094 -1.8552 -2.0152 13 7 0.4636 -3.9655 -1.4243 14 6 -0.3536 -4.2118 -2.6151 15 1 -0.9596 -3.3390 -2.8577 16 6 0.5314 -4.6166 -3.8145 17 8 -0.1472 -5.6668 -4.5190 18 6 -1.3885 -5.9494 -3.8779 19 6 -1.9253 -7.3719 -4.0440 20 7 -3.2559 -6.7399 -4.1616 21 6 -4.5403 -7.1639 -3.9480 22 1 -5.3664 -6.4877 -4.1112 23 6 -4.7806 -8.4629 -3.5216 24 7 -3.7738 -9.2869 -3.3222 25 14 -6.5328 -9.0415 -3.2309 26 1 -7.3070 -8.9292 -4.4931 27 1 -6.5186 -10.4572 -2.7825 28 1 -7.1656 -8.1979 -2.1853 29 6 -2.6467 -5.4678 -4.6021 30 6 -1.2477 -5.4691 -2.4216 31 1 -0.3633 0.0027 1.0276 32 1 -0.3633 0.8886 -0.5162 33 1 -0.3633 -0.8914 -0.5115 34 1 1.9671 2.1206 0.0005 35 1 4.5160 1.2691 -0.0127 36 1 5.0979 -1.8272 -1.0403 37 1 5.6416 -1.1149 0.4976 38 1 4.5717 -2.5373 0.5048 39 1 0.1442 -2.0769 1.2670 40 1 0.6580 -3.7808 1.2668 41 1 1.6115 -2.5637 2.1492 42 1 0.6173 -4.6791 -0.7855 43 1 1.4970 -4.9748 -3.4574 44 1 0.6757 -3.7614 -4.4748 45 1 -1.5901 -7.8651 -4.9564 46 1 -1.8097 -7.9926 -3.1555 47 1 -3.9417 -10.1945 -3.0239 48 1 -3.1010 -4.5838 -4.1545 49 1 -2.5283 -5.3850 -5.6825 50 1 -2.2167 -5.2015 -2.0001 51 1 -0.7468 -6.2172 -1.8072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054015678.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:30 Heat of formation + Delta-G solvation = 33.064520 kcal Electronic energy + Delta-G solvation = -31389.961654 eV Core-core repulsion = 27292.548659 eV Total energy + Delta-G solvation = -4097.412995 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.84559 -40.33877 -39.24251 -36.36882 -34.84588 -34.46374 -32.77390 -32.14187 -30.59235 -29.49686 -29.11761 -28.17362 -25.86393 -25.07526 -24.95572 -24.25026 -22.18902 -21.95892 -20.91536 -20.47499 -18.99217 -18.82801 -17.45904 -16.89700 -16.80757 -16.29388 -15.60508 -15.39414 -15.18076 -15.05688 -14.79485 -14.41441 -14.07805 -13.80967 -13.63635 -13.54380 -13.41535 -13.30475 -13.06340 -12.90502 -12.73283 -12.59047 -12.43979 -12.24886 -12.17011 -12.00670 -11.81864 -11.72758 -11.56376 -11.32777 -11.14183 -10.98775 -10.88681 -10.77805 -10.30004 -10.18088 -10.10064 -9.64223 -9.28847 -8.93230 -8.79799 -8.70627 -7.84015 -6.97869 -5.84679 -3.17324 1.99327 2.20293 2.50113 2.95265 2.96844 3.35037 3.39532 3.40567 4.05837 4.18539 4.29559 4.33950 4.44419 4.51716 4.62470 4.88099 5.00240 5.02306 5.03547 5.05322 5.08339 5.14790 5.23542 5.24989 5.31216 5.31543 5.45042 5.48054 5.48995 5.53554 5.61254 5.70419 5.74951 5.83902 5.91328 6.03671 6.15759 6.22080 6.24178 6.31858 6.36226 6.53015 6.62615 6.96328 7.01242 7.08408 7.14502 7.17591 7.29290 7.43284 7.61587 7.84352 7.88788 8.96726 9.62533 10.49989 11.32814 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020298 B = 0.002248 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.116792 B =12454.367991 C =12829.801198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.048 3.952 3 C -0.207 4.207 4 C -0.191 4.191 5 C 0.005 3.995 6 C -0.083 4.083 7 N -0.426 5.426 8 C 0.113 3.887 9 H 0.122 0.878 10 C -0.165 4.165 11 C 0.501 3.499 12 O -0.511 6.511 13 N -0.712 5.712 14 C 0.112 3.888 15 H 0.104 0.896 16 C 0.045 3.955 17 O -0.365 6.365 18 C 0.056 3.944 19 C 0.178 3.822 20 N -0.604 5.604 21 C -0.222 4.222 22 H 0.081 0.919 23 C -0.007 4.007 24 N -0.921 5.921 25 Si 0.914 3.086 26 H -0.284 1.284 27 H -0.289 1.289 28 H -0.284 1.284 29 C 0.108 3.892 30 C -0.118 4.118 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.403 0.597 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.037 0.963 46 H 0.079 0.921 47 H 0.255 0.745 48 H 0.046 0.954 49 H 0.043 0.957 50 H 0.096 0.904 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.500 14.450 11.230 23.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.062 4.062 3 C -0.231 4.231 4 C -0.216 4.216 5 C -0.104 4.104 6 C -0.141 4.141 7 N -0.104 5.104 8 C 0.006 3.994 9 H 0.140 0.860 10 C -0.222 4.222 11 C 0.285 3.715 12 O -0.385 6.385 13 N -0.365 5.365 14 C 0.007 3.993 15 H 0.122 0.878 16 C -0.034 4.034 17 O -0.283 6.283 18 C 0.015 3.985 19 C 0.052 3.948 20 N -0.333 5.333 21 C -0.350 4.350 22 H 0.099 0.901 23 C -0.203 4.203 24 N -0.568 5.568 25 Si 0.744 3.256 26 H -0.211 1.211 27 H -0.215 1.215 28 H -0.210 1.210 29 C -0.018 4.018 30 C -0.156 4.156 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.239 0.761 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.055 0.945 46 H 0.097 0.903 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.061 0.939 50 H 0.114 0.886 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 15.080 14.419 10.547 23.379 hybrid contribution -0.861 -0.646 0.371 1.139 sum 14.219 13.773 10.918 22.607 Atomic orbital electron populations 1.20464 0.88636 1.03997 1.01464 1.20165 0.93254 0.85361 1.07443 1.20584 0.92761 0.97286 1.12447 1.20581 0.97242 0.92689 1.11064 1.20232 0.84100 0.94720 1.11365 1.20292 0.93801 0.97519 1.02443 1.43535 1.05482 1.03805 1.57569 1.21220 0.99306 0.83791 0.95092 0.86003 1.22228 1.00785 1.03690 0.95546 1.20625 0.80612 0.82947 0.87328 1.90798 1.58646 1.43233 1.45806 1.45916 1.52344 1.12489 1.25722 1.22697 0.91911 0.99998 0.84700 0.87850 1.23441 0.95540 0.91216 0.93164 1.88361 1.33210 1.53923 1.52782 1.24197 0.83066 1.00927 0.90271 1.22241 0.82368 0.89720 1.00465 1.45715 1.01772 1.08567 1.77210 1.18934 0.81396 0.95895 1.38727 0.90100 1.24797 0.97682 0.96026 1.01833 1.69799 1.29109 1.06227 1.51646 0.86175 0.83656 0.77701 0.78077 1.21095 1.21508 1.21045 1.22908 0.90371 0.91313 0.97255 1.22957 1.00521 0.94831 0.97317 0.91824 0.90530 0.91099 0.85011 0.84981 0.91279 0.90234 0.92206 0.90547 0.89897 0.90402 0.76134 0.91747 0.91271 0.94549 0.90255 0.93465 0.93616 0.93899 0.88574 0.89837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 8.30 36.00 0.30 -0.63 16 2 C 0.05 0.58 5.76 -81.79 -0.47 0.11 16 3 C -0.21 -2.48 10.77 -39.78 -0.43 -2.90 16 4 C -0.19 -2.16 10.76 -39.78 -0.43 -2.59 16 5 C 0.01 0.06 6.89 -81.79 -0.56 -0.51 16 6 C -0.08 -0.60 9.93 36.00 0.36 -0.24 16 7 N -0.43 -4.66 2.40 -102.18 -0.25 -4.91 16 8 C 0.11 0.97 3.18 -69.08 -0.22 0.75 16 9 H 0.12 0.78 6.63 -51.93 -0.34 0.44 16 10 C -0.16 -1.06 9.11 37.16 0.34 -0.73 16 11 C 0.50 5.55 6.08 -10.98 -0.07 5.49 16 12 O -0.51 -7.69 13.62 5.55 0.08 -7.61 16 13 N -0.71 -7.05 5.03 -51.79 -0.26 -7.31 16 14 C 0.11 1.45 3.29 -65.84 -0.22 1.24 16 15 H 0.10 1.48 7.72 -51.93 -0.40 1.08 16 16 C 0.04 0.64 7.57 37.92 0.29 0.93 16 17 O -0.37 -6.60 11.16 -35.23 -0.39 -6.99 16 18 C 0.06 1.06 1.48 -90.30 -0.13 0.92 16 19 C 0.18 4.15 7.05 -3.38 -0.02 4.13 16 20 N -0.60 -15.20 3.69 -183.19 -0.68 -15.87 16 21 C -0.22 -6.08 10.70 -15.06 -0.16 -6.24 16 22 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 23 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 24 N -0.92 -26.49 11.40 55.49 0.63 -25.86 16 25 Si 0.91 21.59 29.55 -169.99 -5.02 16.57 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 29 C 0.11 2.24 8.43 -3.37 -0.03 2.21 16 30 C -0.12 -1.79 6.02 -24.89 -0.15 -1.94 16 31 H 0.06 0.55 7.78 -51.93 -0.40 0.15 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.84 5.04 -51.93 -0.26 0.58 16 34 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.35 7.07 -51.93 -0.37 -0.02 16 39 H 0.08 0.57 5.85 -51.93 -0.30 0.27 16 40 H 0.08 0.38 7.56 -51.93 -0.39 -0.01 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.40 2.90 7.92 -40.82 -0.32 2.57 16 43 H 0.06 0.84 8.02 -51.93 -0.42 0.43 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.08 1.97 7.16 -51.93 -0.37 1.60 16 47 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 48 H 0.05 0.88 8.11 -51.93 -0.42 0.46 16 49 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 50 H 0.10 1.55 8.05 -51.93 -0.42 1.13 16 51 H 0.08 1.16 7.98 -51.93 -0.41 0.75 16 LS Contribution 403.12 15.07 6.07 6.07 Total: -1.00 -33.66 403.12 -9.71 -43.37 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -8.19 Total: 2.83 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -1.70 Total: -0.28 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.55 Total: -53.96 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.32 Total: -14.61 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.66 -9.71 -43.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054015678.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.432 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds