Wall clock time and date at job start Wed Apr 1 2020 06:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34854 * 125.89131 * 2 1 4 4 C 1.40889 * 107.41708 * 180.29540 * 3 2 1 5 5 C 1.34852 * 107.41793 * 359.73853 * 4 3 2 6 6 C 1.50698 * 125.89034 * 179.97438 * 5 4 3 7 7 N 1.36340 * 108.21874 * 359.97438 * 5 4 3 8 8 C 1.46502 * 125.63639 * 180.02562 * 7 5 4 9 9 H 1.08994 * 109.47258 * 0.02562 * 8 7 5 10 10 C 1.52998 * 109.47276 * 120.00383 * 8 7 5 11 11 C 1.50709 * 109.47028 * 240.00455 * 8 7 5 12 12 O 1.21284 * 119.99767 * 359.97438 * 11 8 7 13 13 N 1.34773 * 119.99753 * 180.02562 * 11 8 7 14 14 C 1.46506 * 119.99852 * 179.97438 * 13 11 8 15 15 H 1.08994 * 110.88299 * 322.92399 * 14 13 11 16 16 C 1.54459 * 110.82551 * 86.45054 * 14 13 11 17 17 O 1.43519 * 107.57625 * 139.58540 * 16 14 13 18 18 C 1.42539 * 109.64037 * 0.62867 * 17 16 14 19 19 C 1.52944 * 116.18239 * 207.22985 * 18 17 16 20 20 N 1.47773 * 85.80790 * 218.97490 * 19 18 17 21 21 C 1.36934 * 134.40694 * 203.90039 * 20 19 18 22 22 H 1.08000 * 120.00336 * 180.02562 * 21 20 19 23 23 C 1.38818 * 120.00208 * 0.02562 * 21 20 19 24 24 N 1.31619 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00206 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47251 * 59.99816 * 25 23 21 27 27 H 1.48503 * 109.46871 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.46895 * 299.99686 * 25 23 21 29 29 C 1.47769 * 91.18682 * 23.91613 * 20 19 18 30 30 C 1.53997 * 106.48997 * 336.97331 * 18 17 16 31 31 H 1.08997 * 109.47182 * 270.14825 * 1 2 3 32 32 H 1.09000 * 109.47124 * 30.15146 * 1 2 3 33 33 H 1.09004 * 109.46781 * 150.15102 * 1 2 3 34 34 H 1.07991 * 126.29246 * 0.03554 * 3 2 1 35 35 H 1.07999 * 126.29442 * 179.73753 * 4 3 2 36 36 H 1.08999 * 109.47298 * 270.04003 * 6 5 4 37 37 H 1.09000 * 109.47871 * 30.04207 * 6 5 4 38 38 H 1.09005 * 109.47254 * 150.03797 * 6 5 4 39 39 H 1.09002 * 109.47000 * 59.99970 * 10 8 7 40 40 H 1.09003 * 109.47291 * 179.97438 * 10 8 7 41 41 H 1.08997 * 109.47107 * 300.00213 * 10 8 7 42 42 H 0.96997 * 120.00329 * 359.97438 * 13 11 8 43 43 H 1.08998 * 109.83438 * 20.07813 * 16 14 13 44 44 H 1.09001 * 109.91289 * 259.14285 * 16 14 13 45 45 H 1.09003 * 113.81720 * 333.19511 * 19 18 17 46 46 H 1.08997 * 113.82459 * 104.74796 * 19 18 17 47 47 H 0.97003 * 119.99879 * 179.97438 * 24 23 21 48 48 H 1.09003 * 113.82142 * 221.87071 * 29 20 19 49 49 H 1.09003 * 113.93214 * 90.31920 * 29 20 19 50 50 H 1.09006 * 111.15629 * 153.02154 * 30 18 17 51 51 H 1.08997 * 111.15838 * 277.26139 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2975 1.0925 0.0000 4 6 3.6338 0.6461 -0.0069 5 6 3.6090 -0.7022 -0.0050 6 6 4.8133 -1.6080 -0.0112 7 7 2.3063 -1.1046 0.0034 8 6 1.8421 -2.4941 0.0086 9 1 2.7016 -3.1643 0.0051 10 6 1.0038 -2.7471 1.2632 11 6 1.0019 -2.7476 -1.2166 12 8 0.8094 -1.8552 -2.0152 13 7 0.4636 -3.9655 -1.4243 14 6 -0.3536 -4.2118 -2.6151 15 1 -0.9596 -3.3390 -2.8577 16 6 0.5314 -4.6166 -3.8145 17 8 -0.1472 -5.6668 -4.5190 18 6 -1.3885 -5.9494 -3.8779 19 6 -1.9253 -7.3719 -4.0440 20 7 -3.2559 -6.7399 -4.1616 21 6 -4.5403 -7.1639 -3.9480 22 1 -5.3664 -6.4877 -4.1112 23 6 -4.7806 -8.4629 -3.5216 24 7 -3.7738 -9.2869 -3.3222 25 14 -6.5328 -9.0415 -3.2309 26 1 -7.3070 -8.9292 -4.4931 27 1 -6.5186 -10.4572 -2.7825 28 1 -7.1656 -8.1979 -2.1853 29 6 -2.6467 -5.4678 -4.6021 30 6 -1.2477 -5.4691 -2.4216 31 1 -0.3633 0.0027 1.0276 32 1 -0.3633 0.8886 -0.5162 33 1 -0.3633 -0.8914 -0.5115 34 1 1.9671 2.1206 0.0005 35 1 4.5160 1.2691 -0.0127 36 1 5.0979 -1.8272 -1.0403 37 1 5.6416 -1.1149 0.4976 38 1 4.5717 -2.5373 0.5048 39 1 0.1442 -2.0769 1.2670 40 1 0.6580 -3.7808 1.2668 41 1 1.6115 -2.5637 2.1492 42 1 0.6173 -4.6791 -0.7855 43 1 1.4970 -4.9748 -3.4574 44 1 0.6757 -3.7614 -4.4748 45 1 -1.5901 -7.8651 -4.9564 46 1 -1.8097 -7.9926 -3.1555 47 1 -3.9417 -10.1945 -3.0239 48 1 -3.1010 -4.5838 -4.1545 49 1 -2.5283 -5.3850 -5.6825 50 1 -2.2167 -5.2015 -2.0001 51 1 -0.7468 -6.2172 -1.8072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054015678.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:29 Heat of formation + Delta-G solvation = 11.622671 kcal Electronic energy + Delta-G solvation = -31390.891442 eV Core-core repulsion = 27292.548659 eV Total energy + Delta-G solvation = -4098.342783 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.63673 -41.61962 -40.36053 -37.94669 -35.88420 -35.27057 -34.14695 -33.50285 -31.72577 -30.29847 -29.99700 -29.63679 -27.48595 -26.77045 -25.75541 -24.99402 -23.93068 -23.01759 -21.90043 -21.29742 -20.38348 -19.82665 -18.79762 -18.27769 -17.86498 -17.18844 -17.09960 -16.55550 -16.52144 -16.31384 -15.98326 -15.59706 -15.40863 -14.99946 -14.66693 -14.47736 -14.26047 -14.14424 -14.10827 -13.98295 -13.79275 -13.50015 -13.37236 -13.33155 -13.22547 -12.92600 -12.88340 -12.83770 -12.77311 -12.63992 -12.56387 -12.49461 -12.39386 -12.06067 -12.02560 -11.75977 -11.56073 -11.08442 -10.88434 -10.38654 -10.25863 -9.52286 -8.99282 -8.64192 -7.93175 -5.27753 1.17898 1.35411 1.46973 1.50026 1.56147 1.73798 2.11981 2.14008 2.43031 2.81499 3.20343 3.28221 3.41179 3.46603 3.66073 3.71437 3.76451 3.78064 3.90001 3.98715 4.03832 4.18165 4.36599 4.50378 4.54803 4.58260 4.60938 4.63470 4.69182 4.70449 4.75427 4.77696 4.81381 4.82990 4.91088 4.92550 4.98413 5.02439 5.11470 5.13372 5.15482 5.21115 5.31948 5.41853 5.46436 5.52325 5.85855 6.14191 6.20471 6.28267 6.36768 6.54856 6.88320 7.02453 7.56245 8.49844 9.23970 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020298 B = 0.002248 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.116792 B =12454.367991 C =12829.801198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.028 3.972 3 C -0.229 4.229 4 C -0.215 4.215 5 C 0.001 3.999 6 C -0.082 4.082 7 N -0.430 5.430 8 C 0.114 3.886 9 H 0.151 0.849 10 C -0.161 4.161 11 C 0.504 3.496 12 O -0.552 6.552 13 N -0.696 5.696 14 C 0.131 3.869 15 H 0.093 0.907 16 C 0.042 3.958 17 O -0.381 6.381 18 C 0.078 3.922 19 C 0.173 3.827 20 N -0.628 5.628 21 C -0.237 4.237 22 H 0.085 0.915 23 C -0.061 4.061 24 N -0.951 5.951 25 Si 0.980 3.020 26 H -0.281 1.281 27 H -0.293 1.293 28 H -0.272 1.272 29 C 0.105 3.895 30 C -0.108 4.108 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.421 0.579 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.011 0.989 46 H 0.061 0.939 47 H 0.251 0.749 48 H 0.064 0.936 49 H 0.039 0.961 50 H 0.089 0.911 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.316 14.599 12.945 25.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 C -0.253 4.253 4 C -0.239 4.239 5 C -0.109 4.109 6 C -0.139 4.139 7 N -0.108 5.108 8 C 0.008 3.992 9 H 0.168 0.832 10 C -0.219 4.219 11 C 0.289 3.711 12 O -0.429 6.429 13 N -0.351 5.351 14 C 0.025 3.975 15 H 0.111 0.889 16 C -0.035 4.035 17 O -0.299 6.299 18 C 0.037 3.963 19 C 0.048 3.952 20 N -0.356 5.356 21 C -0.364 4.364 22 H 0.103 0.897 23 C -0.255 4.255 24 N -0.599 5.599 25 Si 0.808 3.192 26 H -0.207 1.207 27 H -0.219 1.219 28 H -0.198 1.198 29 C -0.021 4.021 30 C -0.146 4.146 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.153 0.847 35 H 0.161 0.839 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.125 0.875 41 H 0.106 0.894 42 H 0.259 0.741 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.029 0.971 46 H 0.079 0.921 47 H 0.060 0.940 48 H 0.082 0.918 49 H 0.057 0.943 50 H 0.107 0.893 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 15.912 14.578 12.279 24.829 hybrid contribution -1.050 -0.636 -0.238 1.250 sum 14.862 13.942 12.041 23.670 Atomic orbital electron populations 1.20424 0.88136 1.03186 1.02246 1.20405 0.93874 0.86000 1.07987 1.20856 0.93540 0.97817 1.13066 1.20875 0.97408 0.93627 1.12040 1.20812 0.84976 0.95185 1.09919 1.20399 0.92725 0.97835 1.02970 1.43736 1.05504 1.04442 1.57135 1.21453 1.00169 0.83177 0.94432 0.83159 1.22259 1.00138 1.04835 0.94659 1.21080 0.80136 0.82318 0.87537 1.90793 1.60177 1.44541 1.47438 1.45698 1.51464 1.12935 1.24985 1.22284 0.91461 0.98413 0.85363 0.88879 1.23619 0.96151 0.90295 0.93465 1.88334 1.32739 1.55186 1.53628 1.23706 0.82961 0.97223 0.92396 1.22106 0.82697 0.91986 0.98431 1.46009 1.01711 1.10364 1.77524 1.19320 0.82694 0.96278 1.38144 0.89692 1.25625 1.01517 0.96208 1.02132 1.69979 1.30966 1.06182 1.52742 0.85134 0.79116 0.76853 0.78090 1.20749 1.21893 1.19802 1.23035 0.91260 0.90446 0.97322 1.22836 1.00936 0.96054 0.94749 0.90198 0.90832 0.92328 0.84659 0.83873 0.91181 0.88867 0.90275 0.91763 0.87535 0.89393 0.74087 0.89740 0.91338 0.97106 0.92089 0.93989 0.91816 0.94348 0.89264 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.71 8.30 71.23 0.59 -1.12 16 2 C 0.03 0.66 5.76 41.08 0.24 0.90 16 3 C -0.23 -5.47 10.77 22.14 0.24 -5.23 16 4 C -0.22 -4.71 10.76 22.14 0.24 -4.47 16 5 C 0.00 0.02 6.89 41.08 0.28 0.30 16 6 C -0.08 -0.95 9.93 71.24 0.71 -0.24 16 7 N -0.43 -8.66 2.40 -477.20 -1.15 -9.81 16 8 C 0.11 1.62 3.18 44.25 0.14 1.76 16 9 H 0.15 1.27 6.63 -2.39 -0.02 1.26 16 10 C -0.16 -1.57 9.11 71.98 0.66 -0.91 16 11 C 0.50 10.01 6.08 87.66 0.53 10.54 16 12 O -0.55 -16.02 13.62 -3.04 -0.04 -16.06 16 13 N -0.70 -11.77 5.03 -436.15 -2.19 -13.96 16 14 C 0.13 3.13 3.29 46.34 0.15 3.28 16 15 H 0.09 2.52 7.72 -2.39 -0.02 2.50 16 16 C 0.04 1.14 7.57 72.48 0.55 1.69 16 17 O -0.38 -13.40 11.16 -148.98 -1.66 -15.07 16 18 C 0.08 2.90 1.48 -10.44 -0.02 2.89 16 19 C 0.17 8.29 7.05 86.11 0.61 8.90 16 20 N -0.63 -31.94 3.69 -739.60 -2.73 -34.67 16 21 C -0.24 -13.01 10.70 84.04 0.90 -12.11 16 22 H 0.09 4.46 7.83 -2.91 -0.02 4.44 16 23 C -0.06 -3.40 5.50 84.86 0.47 -2.94 16 24 N -0.95 -55.59 11.40 21.65 0.25 -55.34 16 25 Si 0.98 44.43 29.55 68.60 2.03 46.46 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 27 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 28 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 29 C 0.10 4.35 8.43 86.12 0.73 5.07 16 30 C -0.11 -3.07 6.02 31.79 0.19 -2.88 16 31 H 0.08 1.32 7.78 -2.39 -0.02 1.30 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.35 5.04 -2.39 -0.01 1.34 16 34 H 0.14 2.90 8.06 -2.92 -0.02 2.88 16 35 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 36 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.08 0.60 7.07 -2.38 -0.02 0.59 16 39 H 0.06 0.82 5.85 -2.39 -0.01 0.80 16 40 H 0.11 0.53 7.56 -2.39 -0.02 0.51 16 41 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.42 4.38 7.92 -92.71 -0.73 3.64 16 43 H 0.08 1.96 8.02 -2.39 -0.02 1.94 16 44 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.06 3.11 7.16 -2.39 -0.02 3.09 16 47 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 48 H 0.06 2.40 8.11 -2.39 -0.02 2.38 16 49 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.09 2.74 8.05 -2.38 -0.02 2.72 16 51 H 0.10 2.55 7.98 -2.39 -0.02 2.53 16 Total: -1.00 -74.54 403.12 1.90 -72.64 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.20 Total: 20.39 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 7.20 Total: 5.43 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -5.82 Total: -113.78 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -1.70 Total: -31.13 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -74.54 1.90 -72.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054015678.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.260 kcal (2) G-P(sol) polarization free energy of solvation -74.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds