Wall clock time and date at job start Wed Apr 1 2020 05:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36763 * 125.80307 * 2 1 4 4 C 1.47273 * 126.93979 * 359.97438 * 3 2 1 5 5 O 1.21626 * 120.00003 * 318.19605 * 4 3 2 6 6 N 1.34776 * 119.99868 * 138.20125 * 4 3 2 7 7 C 1.47049 * 120.11842 * 174.87901 * 6 4 3 8 8 C 1.53542 * 107.41722 * 130.20034 * 7 6 4 9 9 O 1.42811 * 108.29834 * 55.56707 * 8 7 6 10 10 C 1.42777 * 115.72744 * 295.58237 * 9 8 7 11 11 H 1.09007 * 112.22445 * 290.73217 * 10 9 8 12 12 C 1.55395 * 107.09466 * 166.05930 * 10 9 8 13 13 N 1.47486 * 104.77945 * 281.69188 * 12 10 9 14 14 C 1.36942 * 125.68565 * 155.60058 * 13 12 10 15 15 H 1.07999 * 119.99740 * 179.97438 * 14 13 12 16 16 C 1.38810 * 119.99867 * 359.96687 * 14 13 12 17 17 N 1.31613 * 120.00355 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99401 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47071 * 90.00592 * 18 16 14 20 20 H 1.48502 * 109.46940 * 210.00135 * 18 16 14 21 21 H 1.48494 * 109.47689 * 330.00043 * 18 16 14 22 22 C 1.48448 * 108.74732 * 334.92187 * 13 12 10 23 23 C 1.45664 * 120.11955 * 354.89591 * 6 4 3 24 24 H 1.09000 * 109.95871 * 345.46517 * 23 6 4 25 25 C 1.46681 * 106.11790 * 180.24578 * 3 2 1 26 26 C 1.34489 * 106.33408 * 359.62776 * 25 3 2 27 27 N 1.34660 * 125.80324 * 180.02562 * 2 1 3 28 28 C 1.46504 * 124.84931 * 359.95463 * 27 2 1 29 29 C 1.53003 * 109.46850 * 120.00162 * 28 27 2 30 30 C 1.52996 * 109.47399 * 240.00281 * 28 27 2 31 31 H 1.08998 * 109.47363 * 89.97987 * 1 2 3 32 32 H 1.09006 * 109.47314 * 209.97523 * 1 2 3 33 33 H 1.08999 * 109.47352 * 329.97480 * 1 2 3 34 34 H 1.08996 * 109.88151 * 249.70497 * 7 6 4 35 35 H 1.09002 * 109.87663 * 10.70389 * 7 6 4 36 36 H 1.09006 * 109.67998 * 175.35583 * 8 7 6 37 37 H 1.08997 * 109.68582 * 295.90912 * 8 7 6 38 38 H 1.09007 * 110.37327 * 40.50969 * 12 10 9 39 39 H 1.08997 * 110.38206 * 162.75496 * 12 10 9 40 40 H 0.97001 * 119.99961 * 180.02562 * 17 16 14 41 41 H 1.08994 * 110.71631 * 242.89093 * 22 13 12 42 42 H 1.08998 * 109.81379 * 121.25118 * 22 13 12 43 43 H 1.08009 * 126.83244 * 179.74744 * 25 3 2 44 44 H 1.07993 * 125.57405 * 180.08970 * 26 25 3 45 45 H 1.08998 * 109.47295 * 0.02562 * 28 27 2 46 46 H 1.08998 * 109.47118 * 59.99957 * 29 28 27 47 47 H 1.08997 * 109.46901 * 180.02562 * 29 28 27 48 48 H 1.09003 * 109.47192 * 299.99766 * 29 28 27 49 49 H 1.09007 * 109.46972 * 300.00155 * 30 28 27 50 50 H 1.09000 * 109.47117 * 60.00196 * 30 28 27 51 51 H 1.08997 * 109.47341 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1092 0.0000 4 6 1.8701 2.5156 -0.0005 5 8 0.9401 2.8633 -0.7031 6 7 2.5009 3.4175 0.7774 7 6 2.1423 4.8412 0.6960 8 6 1.9047 5.3380 2.1293 9 8 3.0744 5.0598 2.8999 10 6 3.3875 3.6778 3.0744 11 1 2.6686 3.1702 3.7177 12 6 4.8440 3.6035 3.6109 13 7 5.6933 3.8172 2.4242 14 6 6.9759 4.2969 2.4358 15 1 7.5158 4.4172 1.5082 16 6 7.5819 4.6288 3.6397 17 7 6.9241 4.4819 4.7701 18 14 9.3313 5.2840 3.6552 19 1 9.3063 6.7646 3.5451 20 1 9.9949 4.8932 4.9250 21 1 10.0833 4.7149 2.5082 22 6 4.9345 3.4107 1.2149 23 6 3.5406 2.9854 1.7016 24 1 3.5031 1.9030 1.8242 25 6 3.6881 0.6151 -0.0060 26 6 3.6095 -0.7275 -0.0008 27 7 2.2947 -1.0921 -0.0005 28 6 1.8094 -2.4744 -0.0002 29 6 2.3202 -3.1946 -1.2497 30 6 2.3216 -3.1946 1.2487 31 1 -0.3634 0.0004 -1.0276 32 1 -0.3634 -0.8902 0.5135 33 1 -0.3634 0.8897 0.5142 34 1 2.9569 5.4031 0.2392 35 1 1.2332 4.9613 0.1067 36 1 1.7164 6.4116 2.1192 37 1 1.0490 4.8188 2.5608 38 1 5.0174 4.3877 4.3478 39 1 5.0383 2.6238 4.0473 40 1 7.3476 4.7142 5.6114 41 1 5.4247 2.5756 0.7146 42 1 4.8482 4.2555 0.5315 43 1 4.5889 1.2110 -0.0115 44 1 4.4497 -1.4060 -0.0017 45 1 0.7194 -2.4768 0.0001 46 1 3.4102 -3.1922 -1.2504 47 1 1.9587 -4.2229 -1.2497 48 1 1.9552 -2.6815 -2.1395 49 1 3.4117 -3.1922 1.2481 50 1 1.9577 -2.6816 2.1389 51 1 1.9609 -4.2231 1.2488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083171447.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:55 Heat of formation + Delta-G solvation = 15.418267 kcal Electronic energy + Delta-G solvation = -32619.526717 eV Core-core repulsion = 28521.348524 eV Total energy + Delta-G solvation = -4098.178194 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.57180 -39.96527 -38.01066 -35.67663 -35.32254 -34.36537 -32.10669 -31.73091 -30.39129 -29.41811 -27.73915 -27.71572 -27.21786 -26.22025 -24.33736 -23.56743 -22.50169 -21.75349 -20.44175 -20.06670 -18.86982 -17.98504 -17.26024 -16.92627 -16.49800 -16.24937 -15.35638 -15.31579 -15.02385 -14.78101 -14.58282 -14.35998 -14.10265 -13.71353 -13.63770 -13.40765 -13.17448 -12.97802 -12.82374 -12.79478 -12.55372 -12.45828 -12.37653 -12.18239 -11.88292 -11.69689 -11.56437 -11.52587 -11.41798 -11.08192 -11.04174 -10.81289 -10.70881 -10.51713 -10.11232 -9.88297 -9.70926 -9.40549 -9.38159 -8.64766 -8.47406 -8.15624 -7.97868 -6.80573 -5.61290 -3.01994 1.94421 2.54959 2.67473 3.29153 3.44183 3.48441 3.50455 3.53419 4.20144 4.33352 4.51735 4.52658 4.56151 4.67662 4.87900 5.00661 5.09149 5.11761 5.17279 5.21835 5.28959 5.31251 5.37877 5.41001 5.47852 5.50172 5.54489 5.59801 5.66485 5.72623 5.73560 5.76178 5.83069 5.83402 5.89601 6.06014 6.10298 6.14225 6.23183 6.37582 6.63251 6.72227 6.84314 6.91021 7.15595 7.27628 7.28583 7.60498 7.74199 7.83380 7.98047 8.40468 8.51838 9.24141 9.84654 10.48544 11.43263 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011972 B = 0.003532 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.142881 B = 7925.791694 C = 9408.175762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.088 3.912 3 C -0.227 4.227 4 C 0.595 3.405 5 O -0.558 6.558 6 N -0.593 5.593 7 C 0.079 3.921 8 C 0.049 3.951 9 O -0.356 6.356 10 C 0.054 3.946 11 H 0.067 0.933 12 C 0.163 3.837 13 N -0.595 5.595 14 C -0.217 4.217 15 H 0.077 0.923 16 C -0.010 4.010 17 N -0.922 5.922 18 Si 0.914 3.086 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.131 3.869 23 C 0.096 3.904 24 H 0.107 0.893 25 C -0.162 4.162 26 C -0.014 4.014 27 N -0.437 5.437 28 C 0.122 3.878 29 C -0.162 4.162 30 C -0.164 4.164 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.046 0.954 38 H 0.122 0.878 39 H 0.029 0.971 40 H 0.252 0.748 41 H 0.031 0.969 42 H 0.030 0.970 43 H 0.152 0.848 44 H 0.164 0.836 45 H 0.098 0.902 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.064 0.936 49 H 0.067 0.933 50 H 0.065 0.935 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.343 -14.529 -7.777 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.027 4.027 3 C -0.237 4.237 4 C 0.385 3.615 5 O -0.437 6.437 6 N -0.325 5.325 7 C -0.044 4.044 8 C -0.029 4.029 9 O -0.274 6.274 10 C -0.006 4.006 11 H 0.085 0.915 12 C 0.038 3.962 13 N -0.321 5.321 14 C -0.346 4.346 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.571 5.571 18 Si 0.745 3.255 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.208 1.208 22 C 0.005 3.995 23 C -0.009 4.009 24 H 0.124 0.876 25 C -0.186 4.186 26 C -0.140 4.140 27 N -0.114 5.114 28 C 0.020 3.980 29 C -0.220 4.220 30 C -0.221 4.221 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.064 0.936 38 H 0.140 0.860 39 H 0.046 0.954 40 H 0.063 0.937 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.169 0.831 44 H 0.181 0.819 45 H 0.116 0.884 46 H 0.085 0.915 47 H 0.093 0.907 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.084 0.916 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.624 -14.467 -7.916 21.391 hybrid contribution 0.945 0.060 -0.152 0.959 sum -12.680 -14.407 -8.068 20.819 Atomic orbital electron populations 1.20372 0.87752 1.02935 1.03133 1.20076 0.93262 0.85267 1.04145 1.20025 0.93639 0.91607 1.18411 1.17509 0.81083 0.84389 0.78530 1.90707 1.29599 1.80763 1.42668 1.47550 1.37781 1.07213 1.39919 1.22328 1.02190 0.81080 0.98764 1.22869 0.88973 1.00879 0.90204 1.88018 1.43351 1.24259 1.71766 1.24165 1.00519 0.81809 0.94089 0.91497 1.22091 0.81193 1.01516 0.91446 1.44619 1.12314 1.75214 1.00000 1.19051 0.87416 1.34939 0.93170 0.90490 1.24742 0.98611 1.01923 0.95231 1.69733 1.35912 1.54441 0.97016 0.86075 0.83892 0.78739 0.76788 1.21642 1.21728 1.20823 1.21707 0.89440 0.96983 0.91386 1.22505 0.87955 1.00527 0.89863 0.87571 1.22306 0.95909 0.93448 1.06897 1.21544 0.85469 0.95960 1.10985 1.43741 1.05819 1.05211 1.56662 1.21472 1.00213 0.79439 0.96911 1.22167 1.02493 1.00563 0.96772 1.22179 1.02611 1.00560 0.96780 0.90434 0.91978 0.89881 0.90637 0.88603 0.88375 0.93615 0.86028 0.95362 0.93706 0.95183 0.95157 0.83094 0.81913 0.88366 0.91514 0.90745 0.91734 0.91426 0.91598 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 9.37 36.00 0.34 -0.57 16 2 C 0.09 1.16 6.89 -81.89 -0.56 0.59 16 3 C -0.23 -3.57 5.15 -103.35 -0.53 -4.10 16 4 C 0.59 10.52 7.25 -12.59 -0.09 10.43 16 5 O -0.56 -10.81 15.90 5.25 0.08 -10.72 16 6 N -0.59 -10.42 2.72 -165.98 -0.45 -10.87 16 7 C 0.08 1.29 6.41 -3.46 -0.02 1.27 16 8 C 0.05 0.78 7.03 37.44 0.26 1.05 16 9 O -0.36 -7.35 10.12 -35.23 -0.36 -7.70 16 10 C 0.05 1.08 4.13 -24.67 -0.10 0.98 16 11 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 12 C 0.16 3.95 5.47 -2.23 -0.01 3.94 16 13 N -0.59 -15.20 3.43 -168.97 -0.58 -15.77 16 14 C -0.22 -6.05 10.29 -15.06 -0.15 -6.20 16 15 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 16 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 17 N -0.92 -26.69 10.09 55.49 0.56 -26.13 16 18 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.13 2.80 6.76 -2.63 -0.02 2.78 16 23 C 0.10 1.79 2.32 -67.26 -0.16 1.64 16 24 H 0.11 1.92 5.30 -51.93 -0.28 1.64 16 25 C -0.16 -2.38 8.85 -37.50 -0.33 -2.71 16 26 C -0.01 -0.16 10.17 -16.83 -0.17 -0.34 16 27 N -0.44 -4.77 2.57 -105.47 -0.27 -5.05 16 28 C 0.12 0.89 3.45 -67.93 -0.23 0.66 16 29 C -0.16 -1.00 9.23 37.16 0.34 -0.65 16 30 C -0.16 -1.06 9.23 37.16 0.34 -0.71 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.49 6.96 -51.93 -0.36 0.13 16 33 H 0.08 1.00 7.74 -51.93 -0.40 0.60 16 34 H 0.08 1.29 7.61 -51.93 -0.40 0.89 16 35 H 0.10 1.49 7.01 -51.93 -0.36 1.12 16 36 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.12 3.38 5.86 -51.93 -0.30 3.08 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.03 0.62 6.00 -51.93 -0.31 0.31 16 42 H 0.03 0.68 7.31 -51.93 -0.38 0.30 16 43 H 0.15 2.35 5.39 -52.48 -0.28 2.06 16 44 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 45 H 0.10 0.62 6.47 -51.93 -0.34 0.28 16 46 H 0.07 0.43 7.88 -51.93 -0.41 0.02 16 47 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.07 0.46 7.88 -51.92 -0.41 0.05 16 50 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 51 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 392.03 15.07 5.91 5.91 Total: -1.00 -33.19 392.03 -9.33 -42.52 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -8.00 Total: 3.04 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -1.20 Total: 7.69 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.74 Total: -57.82 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.27 Total: -18.43 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.19 -9.33 -42.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083171447.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.942 kcal (2) G-P(sol) polarization free energy of solvation -33.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds