Wall clock time and date at job start Wed Apr 1 2020 05:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36763 * 125.80307 * 2 1 4 4 C 1.47273 * 126.93979 * 359.97438 * 3 2 1 5 5 O 1.21626 * 120.00003 * 318.19605 * 4 3 2 6 6 N 1.34776 * 119.99868 * 138.20125 * 4 3 2 7 7 C 1.47049 * 120.11842 * 174.87901 * 6 4 3 8 8 C 1.53542 * 107.41722 * 130.20034 * 7 6 4 9 9 O 1.42811 * 108.29834 * 55.56707 * 8 7 6 10 10 C 1.42777 * 115.72744 * 295.58237 * 9 8 7 11 11 H 1.09007 * 112.22445 * 290.73217 * 10 9 8 12 12 C 1.55395 * 107.09466 * 166.05930 * 10 9 8 13 13 N 1.47486 * 104.77945 * 281.69188 * 12 10 9 14 14 C 1.36942 * 125.68565 * 155.60058 * 13 12 10 15 15 H 1.07999 * 119.99740 * 179.97438 * 14 13 12 16 16 C 1.38810 * 119.99867 * 359.96687 * 14 13 12 17 17 N 1.31613 * 120.00355 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99401 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47071 * 90.00592 * 18 16 14 20 20 H 1.48502 * 109.46940 * 210.00135 * 18 16 14 21 21 H 1.48494 * 109.47689 * 330.00043 * 18 16 14 22 22 C 1.48448 * 108.74732 * 334.92187 * 13 12 10 23 23 C 1.45664 * 120.11955 * 354.89591 * 6 4 3 24 24 H 1.09000 * 109.95871 * 345.46517 * 23 6 4 25 25 C 1.46681 * 106.11790 * 180.24578 * 3 2 1 26 26 C 1.34489 * 106.33408 * 359.62776 * 25 3 2 27 27 N 1.34660 * 125.80324 * 180.02562 * 2 1 3 28 28 C 1.46504 * 124.84931 * 359.95463 * 27 2 1 29 29 C 1.53003 * 109.46850 * 120.00162 * 28 27 2 30 30 C 1.52996 * 109.47399 * 240.00281 * 28 27 2 31 31 H 1.08998 * 109.47363 * 89.97987 * 1 2 3 32 32 H 1.09006 * 109.47314 * 209.97523 * 1 2 3 33 33 H 1.08999 * 109.47352 * 329.97480 * 1 2 3 34 34 H 1.08996 * 109.88151 * 249.70497 * 7 6 4 35 35 H 1.09002 * 109.87663 * 10.70389 * 7 6 4 36 36 H 1.09006 * 109.67998 * 175.35583 * 8 7 6 37 37 H 1.08997 * 109.68582 * 295.90912 * 8 7 6 38 38 H 1.09007 * 110.37327 * 40.50969 * 12 10 9 39 39 H 1.08997 * 110.38206 * 162.75496 * 12 10 9 40 40 H 0.97001 * 119.99961 * 180.02562 * 17 16 14 41 41 H 1.08994 * 110.71631 * 242.89093 * 22 13 12 42 42 H 1.08998 * 109.81379 * 121.25118 * 22 13 12 43 43 H 1.08009 * 126.83244 * 179.74744 * 25 3 2 44 44 H 1.07993 * 125.57405 * 180.08970 * 26 25 3 45 45 H 1.08998 * 109.47295 * 0.02562 * 28 27 2 46 46 H 1.08998 * 109.47118 * 59.99957 * 29 28 27 47 47 H 1.08997 * 109.46901 * 180.02562 * 29 28 27 48 48 H 1.09003 * 109.47192 * 299.99766 * 29 28 27 49 49 H 1.09007 * 109.46972 * 300.00155 * 30 28 27 50 50 H 1.09000 * 109.47117 * 60.00196 * 30 28 27 51 51 H 1.08997 * 109.47341 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1092 0.0000 4 6 1.8701 2.5156 -0.0005 5 8 0.9401 2.8633 -0.7031 6 7 2.5009 3.4175 0.7774 7 6 2.1423 4.8412 0.6960 8 6 1.9047 5.3380 2.1293 9 8 3.0744 5.0598 2.8999 10 6 3.3875 3.6778 3.0744 11 1 2.6686 3.1702 3.7177 12 6 4.8440 3.6035 3.6109 13 7 5.6933 3.8172 2.4242 14 6 6.9759 4.2969 2.4358 15 1 7.5158 4.4172 1.5082 16 6 7.5819 4.6288 3.6397 17 7 6.9241 4.4819 4.7701 18 14 9.3313 5.2840 3.6552 19 1 9.3063 6.7646 3.5451 20 1 9.9949 4.8932 4.9250 21 1 10.0833 4.7149 2.5082 22 6 4.9345 3.4107 1.2149 23 6 3.5406 2.9854 1.7016 24 1 3.5031 1.9030 1.8242 25 6 3.6881 0.6151 -0.0060 26 6 3.6095 -0.7275 -0.0008 27 7 2.2947 -1.0921 -0.0005 28 6 1.8094 -2.4744 -0.0002 29 6 2.3202 -3.1946 -1.2497 30 6 2.3216 -3.1946 1.2487 31 1 -0.3634 0.0004 -1.0276 32 1 -0.3634 -0.8902 0.5135 33 1 -0.3634 0.8897 0.5142 34 1 2.9569 5.4031 0.2392 35 1 1.2332 4.9613 0.1067 36 1 1.7164 6.4116 2.1192 37 1 1.0490 4.8188 2.5608 38 1 5.0174 4.3877 4.3478 39 1 5.0383 2.6238 4.0473 40 1 7.3476 4.7142 5.6114 41 1 5.4247 2.5756 0.7146 42 1 4.8482 4.2555 0.5315 43 1 4.5889 1.2110 -0.0115 44 1 4.4497 -1.4060 -0.0017 45 1 0.7194 -2.4768 0.0001 46 1 3.4102 -3.1922 -1.2504 47 1 1.9587 -4.2229 -1.2497 48 1 1.9552 -2.6815 -2.1395 49 1 3.4117 -3.1922 1.2481 50 1 1.9577 -2.6816 2.1389 51 1 1.9609 -4.2231 1.2488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083171447.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:54 Heat of formation + Delta-G solvation = -4.394594 kcal Electronic energy + Delta-G solvation = -32620.385868 eV Core-core repulsion = 28521.348524 eV Total energy + Delta-G solvation = -4099.037344 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.58073 -41.37737 -39.48788 -37.29369 -36.19505 -35.84008 -34.01656 -32.65645 -31.77601 -30.74009 -29.26330 -28.96046 -28.17997 -27.25960 -26.24917 -24.78965 -23.44391 -23.02044 -22.22669 -21.47928 -19.88675 -19.33248 -18.84642 -18.25325 -17.74961 -17.60532 -16.90068 -16.72459 -16.34839 -16.09658 -15.79810 -15.62796 -15.41638 -15.17559 -14.72220 -14.55999 -14.45475 -14.07411 -13.98741 -13.83507 -13.60785 -13.54014 -13.43235 -13.35443 -13.05534 -13.02876 -12.92134 -12.71173 -12.61163 -12.57556 -12.35566 -12.17202 -12.08832 -12.01469 -11.94491 -11.77763 -11.37133 -10.99995 -10.86821 -10.74394 -9.62583 -9.42168 -9.07847 -8.86303 -7.73202 -5.16819 0.83642 1.49163 1.49931 1.51787 1.59861 1.72743 2.05183 2.25008 2.53511 2.85514 3.37700 3.52830 3.59493 3.66184 3.76655 3.80487 3.90595 3.99007 4.02514 4.03570 4.12953 4.17910 4.25408 4.33961 4.40913 4.46250 4.52215 4.62756 4.66346 4.68678 4.73012 4.73603 4.83903 4.85358 4.89249 4.89393 4.99729 5.02498 5.07756 5.21716 5.25317 5.26733 5.33641 5.45287 5.50469 5.78251 5.80493 6.14800 6.26229 6.36919 6.43575 6.48347 7.12390 7.15362 7.77597 8.41744 9.29029 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011972 B = 0.003532 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.142881 B = 7925.791694 C = 9408.175762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.095 3.905 3 C -0.266 4.266 4 C 0.595 3.405 5 O -0.579 6.579 6 N -0.595 5.595 7 C 0.079 3.921 8 C 0.050 3.950 9 O -0.386 6.386 10 C 0.065 3.935 11 H 0.091 0.909 12 C 0.167 3.833 13 N -0.614 5.614 14 C -0.236 4.236 15 H 0.078 0.922 16 C -0.061 4.061 17 N -0.946 5.946 18 Si 0.979 3.021 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.271 1.271 22 C 0.134 3.866 23 C 0.119 3.881 24 H 0.115 0.885 25 C -0.190 4.190 26 C 0.001 3.999 27 N -0.428 5.428 28 C 0.115 3.885 29 C -0.159 4.159 30 C -0.161 4.161 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.123 0.877 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.016 0.984 40 H 0.248 0.752 41 H 0.039 0.961 42 H 0.016 0.984 43 H 0.135 0.865 44 H 0.189 0.811 45 H 0.115 0.885 46 H 0.063 0.937 47 H 0.099 0.901 48 H 0.053 0.947 49 H 0.062 0.938 50 H 0.053 0.947 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.488 -16.761 -8.489 23.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.023 4.023 3 C -0.276 4.276 4 C 0.387 3.613 5 O -0.460 6.460 6 N -0.326 5.326 7 C -0.043 4.043 8 C -0.027 4.027 9 O -0.305 6.305 10 C 0.005 3.995 11 H 0.108 0.892 12 C 0.042 3.958 13 N -0.340 5.340 14 C -0.364 4.364 15 H 0.095 0.905 16 C -0.254 4.254 17 N -0.595 5.595 18 Si 0.807 3.193 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.196 1.196 22 C 0.009 3.991 23 C 0.013 3.987 24 H 0.133 0.867 25 C -0.214 4.214 26 C -0.126 4.126 27 N -0.104 5.104 28 C 0.014 3.986 29 C -0.216 4.216 30 C -0.218 4.218 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.125 0.875 36 H 0.141 0.859 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.034 0.966 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.034 0.966 43 H 0.152 0.848 44 H 0.206 0.794 45 H 0.133 0.867 46 H 0.082 0.918 47 H 0.117 0.883 48 H 0.073 0.927 49 H 0.081 0.919 50 H 0.072 0.928 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.789 -16.724 -8.654 23.944 hybrid contribution 1.252 0.693 0.003 1.431 sum -13.537 -16.031 -8.651 22.695 Atomic orbital electron populations 1.20422 0.86068 1.03762 1.03718 1.20395 0.94357 0.85184 1.02383 1.20038 0.94679 0.91232 1.21626 1.17832 0.80539 0.85179 0.77786 1.90678 1.30635 1.81314 1.43415 1.47568 1.37447 1.07756 1.39836 1.22373 1.02198 0.80526 0.99250 1.23095 0.87768 1.02646 0.89175 1.87952 1.45548 1.24280 1.72722 1.23961 0.98321 0.82334 0.94864 0.89163 1.21801 0.83918 0.99403 0.90674 1.44843 1.12202 1.75307 1.01655 1.19378 0.88677 1.35018 0.93370 0.90454 1.25541 1.02371 1.02505 0.94948 1.69983 1.37141 1.55191 0.97219 0.85076 0.79545 0.77772 0.76885 1.21670 1.21772 1.19590 1.21763 0.90876 0.96562 0.89940 1.22162 0.86649 1.00679 0.89162 0.86689 1.22206 0.95096 0.94691 1.09415 1.21846 0.86670 0.95347 1.08731 1.44043 1.05217 1.06339 1.54797 1.21850 1.01282 0.77369 0.98050 1.22159 1.02339 1.01642 0.95477 1.22175 1.02351 1.01690 0.95589 0.89873 0.88799 0.91389 0.91801 0.87456 0.85904 0.92026 0.89647 0.96627 0.94244 0.94282 0.96580 0.84779 0.79421 0.86734 0.91772 0.88269 0.92747 0.91851 0.92751 0.88257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.58 9.37 71.23 0.67 -0.91 16 2 C 0.09 2.32 6.89 41.78 0.29 2.61 16 3 C -0.27 -8.23 5.15 -19.04 -0.10 -8.33 16 4 C 0.59 20.96 7.25 86.62 0.63 21.59 16 5 O -0.58 -22.30 15.90 -4.11 -0.07 -22.36 16 6 N -0.59 -20.87 2.72 -797.30 -2.17 -23.04 16 7 C 0.08 2.56 6.41 86.46 0.55 3.12 16 8 C 0.05 1.56 7.03 72.16 0.51 2.07 16 9 O -0.39 -15.99 10.12 -148.98 -1.51 -17.50 16 10 C 0.06 2.61 4.13 31.93 0.13 2.74 16 11 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 12 C 0.17 8.40 5.47 87.01 0.48 8.87 16 13 N -0.61 -32.28 3.43 -688.51 -2.36 -34.64 16 14 C -0.24 -13.43 10.29 84.03 0.86 -12.56 16 15 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 16 C -0.06 -3.48 5.49 84.86 0.47 -3.01 16 17 N -0.95 -56.34 10.09 21.65 0.22 -56.12 16 18 Si 0.98 46.12 29.55 68.60 2.03 48.15 16 19 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 20 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 22 C 0.13 5.89 6.76 86.22 0.58 6.48 16 23 C 0.12 4.46 2.32 45.88 0.11 4.56 16 24 H 0.12 4.16 5.30 -2.39 -0.01 4.15 16 25 C -0.19 -5.56 8.85 23.62 0.21 -5.35 16 26 C 0.00 0.02 10.17 83.12 0.85 0.87 16 27 N -0.43 -8.37 2.57 -487.59 -1.25 -9.62 16 28 C 0.11 1.30 3.45 44.99 0.16 1.45 16 29 C -0.16 -1.42 9.23 71.98 0.66 -0.75 16 30 C -0.16 -1.54 9.23 71.98 0.66 -0.88 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.09 1.16 6.96 -2.38 -0.02 1.15 16 33 H 0.07 1.54 7.74 -2.39 -0.02 1.52 16 34 H 0.06 2.21 7.61 -2.39 -0.02 2.19 16 35 H 0.11 3.25 7.01 -2.39 -0.02 3.24 16 36 H 0.12 3.18 8.14 -2.38 -0.02 3.16 16 37 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.09 4.96 5.86 -2.38 -0.01 4.94 16 39 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 41 H 0.04 1.65 6.00 -2.39 -0.01 1.64 16 42 H 0.02 0.75 7.31 -2.39 -0.02 0.73 16 43 H 0.13 4.28 5.39 -2.91 -0.02 4.27 16 44 H 0.19 3.13 8.06 -2.91 -0.02 3.10 16 45 H 0.11 0.96 6.47 -2.39 -0.02 0.95 16 46 H 0.06 0.62 7.88 -2.39 -0.02 0.60 16 47 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.06 0.68 7.88 -2.38 -0.02 0.66 16 50 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -73.91 392.03 3.54 -70.37 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.93 Total: 22.21 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: 7.71 Total: 22.56 kcal Atomic # 7 Polarization: -117.87 SS G_CDS: -5.56 Total: -123.43 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -1.57 Total: -39.86 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -73.91 3.54 -70.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083171447.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.978 kcal (2) G-P(sol) polarization free energy of solvation -73.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds