Wall clock time and date at job start Wed Apr 1 2020 04:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35693 * 119.44377 * 2 1 4 4 C 1.35268 * 121.00033 * 180.02562 * 3 2 1 5 5 C 1.41149 * 119.86741 * 0.02562 * 4 3 2 6 6 C 1.48458 * 120.53773 * 180.02562 * 5 4 3 7 7 O 1.21476 * 120.00240 * 179.97438 * 6 5 4 8 8 N 1.34781 * 120.00177 * 359.97398 * 6 5 4 9 9 C 1.46500 * 120.00051 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46780 * 180.02562 * 9 8 6 11 11 H 1.08996 * 109.58718 * 60.07361 * 10 9 8 12 12 C 1.53195 * 109.58661 * 180.36080 * 10 9 8 13 13 C 1.53065 * 109.29589 * 174.27952 * 12 10 9 14 14 C 1.53040 * 109.66228 * 298.84467 * 13 12 10 15 15 C 1.52996 * 109.49963 * 301.35486 * 14 13 12 16 16 C 1.53003 * 109.52703 * 181.26460 * 14 13 12 17 17 C 1.53199 * 109.30899 * 61.30198 * 14 13 12 18 18 N 1.46928 * 108.77350 * 305.36196 * 17 14 13 19 19 C 1.36930 * 120.63395 * 233.62943 * 18 17 14 20 20 H 1.07998 * 120.00469 * 148.95301 * 19 18 17 21 21 C 1.38817 * 120.00199 * 328.95085 * 19 18 17 22 22 N 1.31618 * 119.99767 * 345.98188 * 21 19 18 23 23 Si 1.86797 * 120.00119 * 165.97360 * 21 19 18 24 24 H 1.48495 * 109.47260 * 60.00334 * 23 21 19 25 25 H 1.48503 * 109.46987 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47215 * 300.00019 * 23 21 19 27 27 C 1.38294 * 118.92676 * 359.97438 * 5 4 3 28 28 C 1.34603 * 119.43550 * 180.28855 * 2 1 3 29 29 O 1.22011 * 119.96791 * 359.96942 * 28 2 1 30 30 H 1.09000 * 109.46695 * 89.99229 * 1 2 3 31 31 H 1.08996 * 109.47433 * 209.99654 * 1 2 3 32 32 H 1.08998 * 109.46781 * 329.99925 * 1 2 3 33 33 H 1.07995 * 119.49895 * 0.02562 * 3 2 1 34 34 H 1.08004 * 120.06724 * 180.02562 * 4 3 2 35 35 H 0.97003 * 119.99841 * 0.02562 * 8 6 5 36 36 H 1.08996 * 109.47500 * 300.00203 * 9 8 6 37 37 H 1.08996 * 109.46750 * 60.00693 * 9 8 6 38 38 H 1.08994 * 109.49510 * 294.37881 * 12 10 9 39 39 H 1.09008 * 109.49335 * 54.46954 * 12 10 9 40 40 H 1.09003 * 109.45345 * 178.75730 * 13 12 10 41 41 H 1.08997 * 109.33892 * 58.86463 * 13 12 10 42 42 H 1.08995 * 109.47463 * 179.83883 * 15 14 13 43 43 H 1.09004 * 109.46858 * 299.83173 * 15 14 13 44 44 H 1.08998 * 109.47557 * 59.82739 * 15 14 13 45 45 H 1.08988 * 109.47260 * 300.14908 * 16 14 13 46 46 H 1.08997 * 109.46628 * 60.15300 * 16 14 13 47 47 H 1.09006 * 109.47019 * 180.14747 * 16 14 13 48 48 H 1.08997 * 109.58549 * 185.58028 * 17 14 13 49 49 H 1.08997 * 109.70724 * 65.22510 * 17 14 13 50 50 H 0.97003 * 120.00290 * 180.02562 * 22 21 19 51 51 H 1.08001 * 120.49382 * 179.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1321 1.1817 0.0000 4 6 3.4843 1.2184 -0.0005 5 6 4.2202 0.0139 -0.0016 6 6 5.7046 0.0369 -0.0016 7 8 6.3282 -1.0056 -0.0021 8 7 6.3604 1.2144 -0.0011 9 6 7.8252 1.2370 -0.0006 10 6 8.3128 2.6873 0.0006 11 1 7.9433 3.1963 0.8908 12 6 9.8445 2.7141 -0.0079 13 6 10.3242 4.1606 -0.1507 14 6 9.8205 4.7420 -1.4738 15 6 10.3366 3.8902 -2.6352 16 6 10.3280 6.1771 -1.6279 17 6 8.2886 4.7381 -1.4782 18 7 7.8183 3.3741 -1.2005 19 6 6.9362 2.7547 -2.0450 20 1 6.9648 1.6816 -2.1635 21 6 6.0051 3.5060 -2.7489 22 7 5.7784 4.7577 -2.4109 23 14 5.0739 2.7407 -4.1760 24 1 4.2981 1.5713 -3.6906 25 1 4.1461 3.7443 -4.7568 26 1 6.0377 2.2983 -5.2156 27 6 3.5360 -1.1879 -0.0016 28 6 2.1265 -1.1723 -0.0059 29 8 1.5055 -2.2225 -0.0106 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5137 32 1 -0.3633 0.8900 0.5138 33 1 1.5749 2.1068 0.0004 34 1 3.9998 2.1675 -0.0001 35 1 5.8624 2.0469 -0.0004 36 1 8.1961 0.7287 0.8894 37 1 8.1967 0.7292 -0.8906 38 1 10.2208 2.2940 0.9247 39 1 10.2139 2.1257 -0.8478 40 1 11.4138 4.1850 -0.1349 41 1 9.9357 4.7532 0.6775 42 1 9.9753 4.3029 -3.5771 43 1 11.4266 3.8932 -2.6317 44 1 9.9758 2.8676 -2.5243 45 1 9.9610 6.7832 -0.7998 46 1 11.4179 6.1793 -1.6248 47 1 9.9666 6.5912 -2.5693 48 1 7.9252 5.0581 -2.4547 49 1 7.9171 5.4163 -0.7100 50 1 5.1275 5.2826 -2.9025 51 1 4.0737 -2.1246 -0.0028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089660532.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:42 Heat of formation + Delta-G solvation = -17.309193 kcal Electronic energy + Delta-G solvation = -32306.399839 eV Core-core repulsion = 28206.802476 eV Total energy + Delta-G solvation = -4099.597363 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.26771 -39.40989 -38.46563 -36.79910 -35.20834 -34.38308 -33.28601 -32.20127 -30.06557 -29.82776 -28.42899 -27.16267 -26.64291 -25.55232 -24.52785 -23.35280 -22.85283 -22.25227 -20.21291 -19.92945 -17.96791 -17.93252 -17.34098 -16.92664 -16.22331 -16.07596 -15.62336 -15.45649 -15.26008 -14.42045 -14.17668 -14.08693 -13.93283 -13.77494 -13.53100 -13.34507 -13.27285 -13.00017 -12.99197 -12.64820 -12.49927 -12.23144 -11.80007 -11.74286 -11.63137 -11.43774 -11.34511 -11.18959 -10.90689 -10.85246 -10.68086 -10.46958 -10.23162 -10.17132 -10.12634 -9.95134 -9.84638 -9.58758 -9.44743 -9.29817 -8.65958 -8.33014 -7.93689 -6.72248 -5.92193 -3.38255 0.57941 1.77953 2.61362 3.14051 3.28315 3.33428 3.39783 3.59261 3.93814 4.35997 4.55006 4.60522 4.94616 5.05003 5.12177 5.13880 5.23067 5.27814 5.36222 5.40758 5.43168 5.45761 5.56363 5.70886 5.81359 5.87021 5.97265 6.04397 6.10308 6.13168 6.19418 6.27177 6.31491 6.34794 6.40822 6.43683 6.44484 6.45551 6.48508 6.61466 6.86422 6.88143 6.95243 7.02570 7.06224 7.08297 7.33016 7.60376 7.71829 7.98682 8.10489 8.32756 8.68060 9.08641 9.70033 10.28408 11.13804 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014397 B = 0.003532 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.430796 B = 7925.651602 C = 8942.572287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.497 5.497 3 C 0.122 3.878 4 C -0.198 4.198 5 C -0.019 4.019 6 C 0.544 3.456 7 O -0.549 6.549 8 N -0.679 5.679 9 C 0.133 3.867 10 C 0.161 3.839 11 H 0.032 0.968 12 C -0.131 4.131 13 C -0.095 4.095 14 C -0.095 4.095 15 C -0.124 4.124 16 C -0.133 4.133 17 C 0.188 3.812 18 N -0.585 5.585 19 C -0.251 4.251 20 H 0.069 0.931 21 C 0.013 3.987 22 N -0.897 5.897 23 Si 0.886 3.114 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.284 1.284 27 C -0.184 4.184 28 C 0.512 3.488 29 O -0.555 6.555 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.167 0.833 34 H 0.158 0.842 35 H 0.416 0.584 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.044 0.956 43 H 0.030 0.970 44 H 0.065 0.935 45 H 0.048 0.952 46 H 0.041 0.959 47 H 0.050 0.950 48 H 0.085 0.915 49 H 0.018 0.982 50 H 0.254 0.746 51 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.285 1.217 6.117 6.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.209 5.209 3 C -0.004 4.004 4 C -0.221 4.221 5 C -0.026 4.026 6 C 0.329 3.671 7 O -0.429 6.429 8 N -0.330 5.330 9 C 0.009 3.991 10 C 0.054 3.946 11 H 0.050 0.950 12 C -0.170 4.170 13 C -0.133 4.133 14 C -0.097 4.097 15 C -0.182 4.182 16 C -0.191 4.191 17 C 0.062 3.938 18 N -0.309 5.309 19 C -0.380 4.380 20 H 0.086 0.914 21 C -0.186 4.186 22 N -0.541 5.541 23 Si 0.716 3.284 24 H -0.206 1.206 25 H -0.217 1.217 26 H -0.210 1.210 27 C -0.207 4.207 28 C 0.314 3.686 29 O -0.438 6.438 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.184 0.816 34 H 0.175 0.825 35 H 0.256 0.744 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.084 0.916 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.069 0.931 48 H 0.103 0.897 49 H 0.036 0.964 50 H 0.064 0.936 51 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.405 -0.033 6.041 6.502 hybrid contribution -0.674 0.366 -1.040 1.292 sum -3.078 0.333 5.001 5.882 Atomic orbital electron populations 1.22148 0.77362 1.04819 1.03879 1.45347 1.09268 1.06881 1.59436 1.21828 0.93680 0.89176 0.95708 1.20900 0.92550 0.99246 1.09453 1.20629 0.94354 0.93693 0.93935 1.18234 0.86497 0.84404 0.77989 1.90720 1.68439 1.32526 1.51186 1.45956 1.07907 1.08399 1.70761 1.21369 0.79255 0.97474 1.01026 1.20732 0.92104 0.90626 0.91171 0.95016 1.22010 0.97233 0.97082 1.00691 1.21408 0.98578 0.95895 0.97430 1.21242 1.00317 0.93719 0.94404 1.21701 0.97826 1.01188 0.97455 1.21756 0.99377 0.96777 1.01222 1.20801 0.86308 0.85346 1.01322 1.44028 1.50448 1.14018 1.22359 1.19132 1.08284 0.92229 1.18403 0.91382 1.24997 0.97157 0.96415 1.00037 1.69992 1.35493 1.08205 1.40395 0.86621 0.79824 0.78442 0.83532 1.20641 1.21671 1.21030 1.22647 0.92026 0.99697 1.06306 1.17080 0.88947 0.82786 0.79747 1.90927 1.69474 1.29802 1.53645 0.90665 0.88877 0.89612 0.81571 0.82475 0.74417 0.92356 0.91285 0.93037 0.91608 0.93638 0.92942 0.93663 0.95055 0.91584 0.93337 0.93973 0.93056 0.89669 0.96419 0.93558 0.82216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 10.34 59.85 0.62 1.15 16 2 N -0.50 -6.30 2.98 -127.13 -0.38 -6.68 16 3 C 0.12 1.39 10.25 -16.90 -0.17 1.22 16 4 C -0.20 -2.76 9.51 -39.54 -0.38 -3.14 16 5 C -0.02 -0.32 5.91 -104.56 -0.62 -0.94 16 6 C 0.54 10.08 7.80 -12.05 -0.09 9.99 16 7 O -0.55 -11.62 16.39 5.39 0.09 -11.53 16 8 N -0.68 -12.06 3.80 -61.05 -0.23 -12.29 16 9 C 0.13 2.32 4.43 -4.04 -0.02 2.30 16 10 C 0.16 2.82 3.01 -67.59 -0.20 2.61 16 11 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 12 C -0.13 -2.02 5.04 -26.60 -0.13 -2.15 16 13 C -0.10 -1.46 4.71 -26.68 -0.13 -1.58 16 14 C -0.10 -1.60 0.77 -154.39 -0.12 -1.72 16 15 C -0.12 -2.12 7.99 37.16 0.30 -1.83 16 16 C -0.13 -2.00 8.48 37.16 0.32 -1.68 16 17 C 0.19 3.85 3.95 -3.71 -0.01 3.84 16 18 N -0.59 -12.02 2.41 -164.77 -0.40 -12.42 16 19 C -0.25 -5.71 6.97 -15.06 -0.10 -5.81 16 20 H 0.07 1.63 5.86 -52.49 -0.31 1.32 16 21 C 0.01 0.32 4.97 -17.43 -0.09 0.24 16 22 N -0.90 -22.25 11.23 55.49 0.62 -21.62 16 23 Si 0.89 19.99 29.58 -169.99 -5.03 14.96 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C -0.18 -3.09 9.61 -38.53 -0.37 -3.46 16 28 C 0.51 8.38 7.42 -15.31 -0.11 8.27 16 29 O -0.56 -10.50 16.62 4.91 0.08 -10.42 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.90 7.38 -51.93 -0.38 0.52 16 32 H 0.09 0.47 8.00 -51.93 -0.42 0.05 16 33 H 0.17 1.23 8.02 -52.49 -0.42 0.81 16 34 H 0.16 2.16 6.50 -52.48 -0.34 1.82 16 35 H 0.42 7.43 5.50 -40.82 -0.22 7.20 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.33 7.42 -51.93 -0.39 0.95 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 1.07 6.35 -51.92 -0.33 0.74 16 40 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.07 1.23 5.98 -51.93 -0.31 0.92 16 45 H 0.05 0.70 8.14 -51.94 -0.42 0.28 16 46 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.09 2.02 6.19 -51.93 -0.32 1.70 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.25 6.29 8.31 -40.82 -0.34 5.95 16 51 H 0.16 2.76 7.69 -52.49 -0.40 2.36 16 LS Contribution 396.37 15.07 5.97 5.97 Total: -1.00 -29.33 396.37 -8.64 -37.97 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -8.05 Total: 8.75 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -1.32 Total: 7.30 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.38 Total: -53.01 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: 0.17 Total: -21.95 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.96 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.33 -8.64 -37.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089660532.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.664 kcal (2) G-P(sol) polarization free energy of solvation -29.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds