Wall clock time and date at job start Wed Apr 1 2020 04:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35693 * 119.44377 * 2 1 4 4 C 1.35268 * 121.00033 * 180.02562 * 3 2 1 5 5 C 1.41149 * 119.86741 * 0.02562 * 4 3 2 6 6 C 1.48458 * 120.53773 * 180.02562 * 5 4 3 7 7 O 1.21476 * 120.00240 * 179.97438 * 6 5 4 8 8 N 1.34781 * 120.00177 * 359.97398 * 6 5 4 9 9 C 1.46500 * 120.00051 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46780 * 180.02562 * 9 8 6 11 11 H 1.08996 * 109.58718 * 60.07361 * 10 9 8 12 12 C 1.53195 * 109.58661 * 180.36080 * 10 9 8 13 13 C 1.53065 * 109.29589 * 174.27952 * 12 10 9 14 14 C 1.53040 * 109.66228 * 298.84467 * 13 12 10 15 15 C 1.52996 * 109.49963 * 301.35486 * 14 13 12 16 16 C 1.53003 * 109.52703 * 181.26460 * 14 13 12 17 17 C 1.53199 * 109.30899 * 61.30198 * 14 13 12 18 18 N 1.46928 * 108.77350 * 305.36196 * 17 14 13 19 19 C 1.36930 * 120.63395 * 233.62943 * 18 17 14 20 20 H 1.07998 * 120.00469 * 148.95301 * 19 18 17 21 21 C 1.38817 * 120.00199 * 328.95085 * 19 18 17 22 22 N 1.31618 * 119.99767 * 345.98188 * 21 19 18 23 23 Si 1.86797 * 120.00119 * 165.97360 * 21 19 18 24 24 H 1.48495 * 109.47260 * 60.00334 * 23 21 19 25 25 H 1.48503 * 109.46987 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47215 * 300.00019 * 23 21 19 27 27 C 1.38294 * 118.92676 * 359.97438 * 5 4 3 28 28 C 1.34603 * 119.43550 * 180.28855 * 2 1 3 29 29 O 1.22011 * 119.96791 * 359.96942 * 28 2 1 30 30 H 1.09000 * 109.46695 * 89.99229 * 1 2 3 31 31 H 1.08996 * 109.47433 * 209.99654 * 1 2 3 32 32 H 1.08998 * 109.46781 * 329.99925 * 1 2 3 33 33 H 1.07995 * 119.49895 * 0.02562 * 3 2 1 34 34 H 1.08004 * 120.06724 * 180.02562 * 4 3 2 35 35 H 0.97003 * 119.99841 * 0.02562 * 8 6 5 36 36 H 1.08996 * 109.47500 * 300.00203 * 9 8 6 37 37 H 1.08996 * 109.46750 * 60.00693 * 9 8 6 38 38 H 1.08994 * 109.49510 * 294.37881 * 12 10 9 39 39 H 1.09008 * 109.49335 * 54.46954 * 12 10 9 40 40 H 1.09003 * 109.45345 * 178.75730 * 13 12 10 41 41 H 1.08997 * 109.33892 * 58.86463 * 13 12 10 42 42 H 1.08995 * 109.47463 * 179.83883 * 15 14 13 43 43 H 1.09004 * 109.46858 * 299.83173 * 15 14 13 44 44 H 1.08998 * 109.47557 * 59.82739 * 15 14 13 45 45 H 1.08988 * 109.47260 * 300.14908 * 16 14 13 46 46 H 1.08997 * 109.46628 * 60.15300 * 16 14 13 47 47 H 1.09006 * 109.47019 * 180.14747 * 16 14 13 48 48 H 1.08997 * 109.58549 * 185.58028 * 17 14 13 49 49 H 1.08997 * 109.70724 * 65.22510 * 17 14 13 50 50 H 0.97003 * 120.00290 * 180.02562 * 22 21 19 51 51 H 1.08001 * 120.49382 * 179.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1321 1.1817 0.0000 4 6 3.4843 1.2184 -0.0005 5 6 4.2202 0.0139 -0.0016 6 6 5.7046 0.0369 -0.0016 7 8 6.3282 -1.0056 -0.0021 8 7 6.3604 1.2144 -0.0011 9 6 7.8252 1.2370 -0.0006 10 6 8.3128 2.6873 0.0006 11 1 7.9433 3.1963 0.8908 12 6 9.8445 2.7141 -0.0079 13 6 10.3242 4.1606 -0.1507 14 6 9.8205 4.7420 -1.4738 15 6 10.3366 3.8902 -2.6352 16 6 10.3280 6.1771 -1.6279 17 6 8.2886 4.7381 -1.4782 18 7 7.8183 3.3741 -1.2005 19 6 6.9362 2.7547 -2.0450 20 1 6.9648 1.6816 -2.1635 21 6 6.0051 3.5060 -2.7489 22 7 5.7784 4.7577 -2.4109 23 14 5.0739 2.7407 -4.1760 24 1 4.2981 1.5713 -3.6906 25 1 4.1461 3.7443 -4.7568 26 1 6.0377 2.2983 -5.2156 27 6 3.5360 -1.1879 -0.0016 28 6 2.1265 -1.1723 -0.0059 29 8 1.5055 -2.2225 -0.0106 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5137 32 1 -0.3633 0.8900 0.5138 33 1 1.5749 2.1068 0.0004 34 1 3.9998 2.1675 -0.0001 35 1 5.8624 2.0469 -0.0004 36 1 8.1961 0.7287 0.8894 37 1 8.1967 0.7292 -0.8906 38 1 10.2208 2.2940 0.9247 39 1 10.2139 2.1257 -0.8478 40 1 11.4138 4.1850 -0.1349 41 1 9.9357 4.7532 0.6775 42 1 9.9753 4.3029 -3.5771 43 1 11.4266 3.8932 -2.6317 44 1 9.9758 2.8676 -2.5243 45 1 9.9610 6.7832 -0.7998 46 1 11.4179 6.1793 -1.6248 47 1 9.9666 6.5912 -2.5693 48 1 7.9252 5.0581 -2.4547 49 1 7.9171 5.4163 -0.7100 50 1 5.1275 5.2826 -2.9025 51 1 4.0737 -2.1246 -0.0028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089660532.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:41 Heat of formation + Delta-G solvation = -33.614449 kcal Electronic energy + Delta-G solvation = -32307.106888 eV Core-core repulsion = 28206.802476 eV Total energy + Delta-G solvation = -4100.304412 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.44013 -40.87906 -39.91659 -38.04542 -36.67706 -35.55993 -34.97418 -33.64406 -31.69685 -30.98195 -29.61759 -28.30925 -27.98591 -27.26568 -25.75705 -24.55419 -24.26672 -23.65799 -21.71915 -21.32985 -19.44646 -19.22029 -18.53039 -18.20523 -17.69637 -17.26903 -17.09005 -16.73378 -16.70245 -16.10218 -15.70991 -15.34726 -15.30541 -15.20021 -14.96074 -14.68666 -14.51001 -14.26396 -14.10728 -13.93414 -13.72394 -13.47047 -13.14649 -12.98435 -12.89569 -12.85283 -12.72062 -12.70688 -12.47365 -12.45839 -12.20752 -12.08350 -11.82835 -11.65383 -11.52125 -11.22372 -11.12306 -11.03648 -10.87378 -10.78987 -10.43743 -9.88545 -9.09998 -8.45971 -7.75674 -5.20965 -0.65210 0.61604 1.42990 1.48692 1.54019 1.59472 1.76511 2.18593 2.53553 2.65013 3.38289 3.55235 3.64354 3.66150 3.71486 4.01060 4.07719 4.10289 4.12781 4.24428 4.36014 4.40767 4.43345 4.45910 4.56500 4.67416 4.72988 4.77484 4.80221 4.90050 4.94361 4.96900 4.98660 5.09472 5.13600 5.14313 5.17870 5.20677 5.29698 5.39227 5.44415 5.49299 5.56377 5.61317 5.66968 5.78279 5.86925 5.89894 5.94433 6.51855 6.62181 6.79113 7.19806 7.28157 7.96337 8.50216 9.27620 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014397 B = 0.003532 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.430796 B = 7925.651602 C = 8942.572287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.489 5.489 3 C 0.157 3.843 4 C -0.222 4.222 5 C -0.016 4.016 6 C 0.540 3.460 7 O -0.582 6.582 8 N -0.674 5.674 9 C 0.135 3.865 10 C 0.162 3.838 11 H 0.037 0.963 12 C -0.126 4.126 13 C -0.091 4.091 14 C -0.093 4.093 15 C -0.118 4.118 16 C -0.128 4.128 17 C 0.197 3.803 18 N -0.594 5.594 19 C -0.232 4.232 20 H 0.055 0.945 21 C -0.016 4.016 22 N -0.914 5.914 23 Si 0.922 3.078 24 H -0.282 1.282 25 H -0.292 1.292 26 H -0.300 1.300 27 C -0.213 4.213 28 C 0.505 3.495 29 O -0.592 6.592 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.132 0.868 33 H 0.223 0.777 34 H 0.161 0.839 35 H 0.417 0.583 36 H 0.076 0.924 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.028 0.972 43 H 0.056 0.944 44 H 0.046 0.954 45 H 0.052 0.948 46 H 0.065 0.935 47 H 0.041 0.959 48 H 0.049 0.951 49 H -0.001 1.001 50 H 0.249 0.751 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.261 3.026 7.307 8.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.198 5.198 3 C 0.030 3.970 4 C -0.244 4.244 5 C -0.024 4.024 6 C 0.326 3.674 7 O -0.464 6.464 8 N -0.324 5.324 9 C 0.012 3.988 10 C 0.056 3.944 11 H 0.054 0.946 12 C -0.165 4.165 13 C -0.128 4.128 14 C -0.095 4.095 15 C -0.175 4.175 16 C -0.186 4.186 17 C 0.072 3.928 18 N -0.318 5.318 19 C -0.363 4.363 20 H 0.073 0.927 21 C -0.213 4.213 22 N -0.560 5.560 23 Si 0.753 3.247 24 H -0.208 1.208 25 H -0.218 1.218 26 H -0.228 1.228 27 C -0.236 4.236 28 C 0.309 3.691 29 O -0.479 6.479 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.150 0.850 33 H 0.239 0.761 34 H 0.179 0.821 35 H 0.257 0.743 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.047 0.953 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.017 0.983 50 H 0.059 0.941 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.385 1.801 7.243 7.835 hybrid contribution -0.681 -0.151 -1.406 1.569 sum -3.066 1.650 5.837 6.797 Atomic orbital electron populations 1.22530 0.74480 1.06653 1.05213 1.45520 1.11128 1.06181 1.56941 1.22590 0.93100 0.90228 0.91066 1.20975 0.93806 0.98130 1.11473 1.20568 0.93144 0.94735 0.93920 1.18604 0.87544 0.83996 0.77259 1.90693 1.69403 1.33556 1.52726 1.45945 1.08096 1.08191 1.70166 1.21375 0.79126 0.97532 1.00798 1.20855 0.93752 0.89947 0.89803 0.94551 1.21967 0.95083 0.97607 1.01869 1.21383 1.00034 0.95271 0.96144 1.21165 0.97411 0.95303 0.95578 1.21625 0.99353 0.99792 0.96752 1.21703 1.00791 0.95190 1.00940 1.20576 0.88958 0.84743 0.98554 1.44143 1.50246 1.14102 1.23293 1.19047 1.07693 0.91557 1.17990 0.92715 1.25230 0.98148 0.96689 1.01262 1.70065 1.36201 1.08678 1.41069 0.86080 0.78854 0.77714 0.82074 1.20826 1.21798 1.22777 1.22477 0.92795 0.99242 1.09108 1.16977 0.88650 0.83551 0.79971 1.90895 1.69960 1.31234 1.55847 0.89539 0.89954 0.84971 0.76092 0.82125 0.74336 0.90627 0.93421 0.90260 0.92360 0.91142 0.92519 0.95313 0.92462 0.93533 0.92879 0.91595 0.94024 0.93272 0.98251 0.94147 0.84127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.73 10.34 127.77 1.32 2.05 16 2 N -0.49 -11.23 2.98 -674.32 -2.01 -13.24 16 3 C 0.16 3.03 10.25 83.41 0.86 3.89 16 4 C -0.22 -5.83 9.51 22.30 0.21 -5.62 16 5 C -0.02 -0.55 5.91 -19.82 -0.12 -0.67 16 6 C 0.54 20.53 7.80 86.97 0.68 21.21 16 7 O -0.58 -25.59 16.39 -3.64 -0.06 -25.65 16 8 N -0.67 -24.05 3.80 -465.38 -1.77 -25.82 16 9 C 0.14 4.70 4.43 86.38 0.38 5.08 16 10 C 0.16 5.50 3.01 44.98 0.14 5.64 16 11 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 12 C -0.13 -3.58 5.04 30.68 0.15 -3.42 16 13 C -0.09 -2.48 4.71 30.63 0.14 -2.33 16 14 C -0.09 -2.98 0.77 -52.10 -0.04 -3.02 16 15 C -0.12 -3.87 7.99 71.98 0.58 -3.30 16 16 C -0.13 -3.55 8.48 71.98 0.61 -2.94 16 17 C 0.20 8.06 3.95 86.36 0.34 8.41 16 18 N -0.59 -24.31 2.41 -675.20 -1.63 -25.94 16 19 C -0.23 -10.67 6.97 84.04 0.59 -10.09 16 20 H 0.06 2.68 5.86 -2.91 -0.02 2.66 16 21 C -0.02 -0.77 4.97 84.86 0.42 -0.34 16 22 N -0.91 -45.68 11.23 21.65 0.24 -45.44 16 23 Si 0.92 41.42 29.58 68.60 2.03 43.45 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 26 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 27 C -0.21 -7.47 9.61 22.95 0.22 -7.25 16 28 C 0.51 16.62 7.42 84.93 0.63 17.25 16 29 O -0.59 -23.00 16.62 -5.35 -0.09 -23.08 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.08 1.43 7.38 -2.39 -0.02 1.42 16 32 H 0.13 0.71 8.00 -2.39 -0.02 0.69 16 33 H 0.22 1.89 8.02 -2.91 -0.02 1.87 16 34 H 0.16 4.16 6.50 -2.91 -0.02 4.14 16 35 H 0.42 14.81 5.50 -92.71 -0.51 14.30 16 36 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.05 1.87 7.42 -2.39 -0.02 1.85 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.06 1.77 6.35 -2.38 -0.02 1.76 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.05 1.70 5.98 -2.39 -0.01 1.68 16 45 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 48 H 0.05 2.37 6.19 -2.39 -0.01 2.36 16 49 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 50 H 0.25 12.39 8.31 -92.71 -0.77 11.62 16 51 H 0.14 5.32 7.69 -2.91 -0.02 5.30 16 Total: -1.00 -67.36 396.37 4.25 -63.11 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 0.43 Total: 28.06 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: 7.11 Total: 24.55 kcal Atomic # 7 Polarization: -105.28 SS G_CDS: -5.16 Total: -110.44 kcal Atomic # 8 Polarization: -48.58 SS G_CDS: -0.15 Total: -48.73 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -67.36 4.25 -63.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089660532.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.493 kcal (2) G-P(sol) polarization free energy of solvation -67.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds