Wall clock time and date at job start Wed Apr 1 2020 04:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34675 * 119.70587 * 2 1 4 4 O 1.21969 * 119.95220 * 359.97438 * 3 2 1 5 5 C 1.41225 * 120.09128 * 179.97438 * 3 2 1 6 6 C 1.36116 * 119.50932 * 0.02562 * 5 3 2 7 7 C 1.40403 * 119.41692 * 0.02562 * 6 5 3 8 8 C 1.36297 * 119.90501 * 359.97438 * 7 6 5 9 9 C 1.47885 * 119.75687 * 179.97438 * 8 7 6 10 10 O 1.21539 * 119.99869 * 174.50389 * 9 8 7 11 11 N 1.34778 * 119.99966 * 354.49665 * 9 8 7 12 12 C 1.46498 * 119.99975 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47088 * 180.02562 * 12 11 9 14 14 H 1.08994 * 109.58589 * 300.13628 * 13 12 11 15 15 C 1.53192 * 109.58475 * 179.84869 * 13 12 11 16 16 C 1.53075 * 109.29348 * 185.72055 * 15 13 12 17 17 C 1.53040 * 109.65835 * 61.15215 * 16 15 13 18 18 C 1.52994 * 109.49723 * 178.74770 * 17 16 15 19 19 C 1.53004 * 109.49680 * 58.65490 * 17 16 15 20 20 C 1.53190 * 109.31437 * 298.70202 * 17 16 15 21 21 N 1.46925 * 109.58271 * 60.41834 * 13 12 11 22 22 C 1.36932 * 120.63565 * 353.37022 * 21 13 12 23 23 H 1.08003 * 119.99993 * 32.56821 * 22 21 13 24 24 C 1.38811 * 120.00486 * 212.56785 * 22 21 13 25 25 N 1.31627 * 119.99791 * 10.14911 * 24 22 21 26 26 Si 1.86796 * 120.00436 * 190.14611 * 24 22 21 27 27 H 1.48495 * 109.47276 * 59.99594 * 26 24 22 28 28 H 1.48499 * 109.47373 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.46950 * 299.99821 * 26 24 22 30 30 H 1.08999 * 109.46887 * 244.45666 * 1 2 3 31 31 H 1.09000 * 109.47171 * 4.45788 * 1 2 3 32 32 H 1.08998 * 109.47107 * 124.45521 * 1 2 3 33 33 H 1.08004 * 120.24855 * 180.02562 * 5 3 2 34 34 H 1.07999 * 120.29081 * 180.02562 * 6 5 3 35 35 H 1.07995 * 120.04828 * 180.25783 * 7 6 5 36 36 H 0.97001 * 119.99606 * 0.02562 * 11 9 8 37 37 H 1.09003 * 109.46765 * 300.00288 * 12 11 9 38 38 H 1.08996 * 109.47143 * 60.00122 * 12 11 9 39 39 H 1.08997 * 109.49797 * 305.53088 * 15 13 12 40 40 H 1.08996 * 109.49711 * 65.63003 * 15 13 12 41 41 H 1.09000 * 109.34706 * 301.12904 * 16 15 13 42 42 H 1.09001 * 109.45351 * 181.24307 * 16 15 13 43 43 H 1.09001 * 109.47442 * 179.83954 * 18 17 16 44 44 H 1.09000 * 109.47342 * 299.83997 * 18 17 16 45 45 H 1.09000 * 109.47222 * 59.84079 * 18 17 16 46 46 H 1.09006 * 109.46756 * 300.15685 * 19 17 16 47 47 H 1.08998 * 109.47165 * 60.15297 * 19 17 16 48 48 H 1.09000 * 109.47221 * 180.16304 * 19 17 16 49 49 H 1.08998 * 109.58601 * 294.84306 * 20 17 16 50 50 H 1.09001 * 109.70182 * 174.49376 * 20 17 16 51 51 H 0.97000 * 119.99972 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1323 1.1698 0.0000 4 8 1.5162 2.2224 -0.0005 5 6 3.5446 1.1793 0.0005 6 6 4.2230 -0.0008 0.0005 7 6 3.5064 -1.2082 -0.0006 8 6 2.1436 -1.1896 -0.0011 9 6 1.3921 -2.4633 -0.0028 10 8 0.1809 -2.4543 0.0975 11 7 2.0504 -3.6339 -0.1158 12 6 1.3059 -4.8956 -0.1181 13 6 2.2836 -6.0644 -0.2566 14 1 2.8391 -5.9675 -1.1893 15 6 1.5080 -7.3855 -0.2555 16 6 2.4979 -8.5531 -0.2502 17 6 3.3580 -8.4932 1.0141 18 6 4.3246 -9.6790 1.0309 19 6 2.4560 -8.5513 2.2486 20 6 4.1542 -7.1845 1.0238 21 7 3.2190 -6.0609 0.8764 22 6 3.2196 -5.0299 1.7776 23 1 2.2979 -4.5190 2.0142 24 6 4.4047 -4.6413 2.3870 25 7 5.5531 -5.1210 1.9586 26 14 4.3698 -3.4376 3.8150 27 1 3.5663 -4.0096 4.9251 28 1 5.7559 -3.1865 4.2848 29 1 3.7594 -2.1591 3.3699 30 1 -0.3633 -0.4431 0.9272 31 1 -0.3633 1.0246 -0.0799 32 1 -0.3633 -0.5814 -0.8474 33 1 4.0824 2.1159 0.0010 34 1 5.3029 -0.0083 0.0014 35 1 4.0343 -2.1503 0.0036 36 1 3.0171 -3.6409 -0.1956 37 1 0.7535 -4.9932 0.8165 38 1 0.6080 -4.9042 -0.9552 39 1 0.8811 -7.4386 0.6346 40 1 0.8818 -7.4405 -1.1459 41 1 3.1392 -8.4868 -1.1291 42 1 1.9489 -9.4945 -0.2717 43 1 4.9390 -9.6344 1.9301 44 1 3.7577 -10.6100 1.0240 45 1 4.9658 -9.6376 0.1504 46 1 1.7668 -7.7069 2.2351 47 1 1.8897 -9.4826 2.2413 48 1 3.0688 -8.5057 3.1489 49 1 4.8624 -7.1815 0.1953 50 1 4.6938 -7.0896 1.9661 51 1 6.3812 -4.8498 2.3847 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089690679.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:53 Heat of formation + Delta-G solvation = -13.505086 kcal Electronic energy + Delta-G solvation = -32735.207942 eV Core-core repulsion = 28635.775537 eV Total energy + Delta-G solvation = -4099.432404 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.37923 -39.42463 -38.53013 -36.57849 -35.51171 -34.32546 -33.34988 -32.45299 -30.22344 -30.10232 -27.54452 -27.37638 -26.67286 -25.60601 -24.83429 -23.34442 -22.44632 -22.31072 -20.50138 -20.24247 -18.01385 -17.92075 -17.25891 -16.82943 -16.34011 -16.16450 -15.59454 -15.51439 -15.16337 -14.51618 -14.46049 -14.20649 -13.96209 -13.83092 -13.57818 -13.36974 -13.12359 -12.93185 -12.64523 -12.50880 -12.33742 -12.29021 -11.95991 -11.80029 -11.58470 -11.45777 -11.38793 -11.22325 -10.94377 -10.90817 -10.73570 -10.51567 -10.22732 -10.17918 -10.07834 -10.02309 -9.88101 -9.61575 -9.49177 -9.36723 -8.76827 -8.48463 -7.91977 -6.75381 -5.96900 -3.46628 0.54185 1.76838 2.59030 3.05900 3.24443 3.31010 3.35736 3.45925 3.78595 4.30315 4.68237 4.69964 4.93344 5.08075 5.17542 5.24580 5.32265 5.36924 5.39408 5.52607 5.58865 5.60722 5.65846 5.75907 5.90316 5.91715 5.92893 5.98205 6.06427 6.07292 6.15359 6.22358 6.27357 6.28800 6.35373 6.39177 6.40642 6.43463 6.46394 6.57407 6.76032 6.83235 6.85216 6.97412 7.04622 7.09572 7.30048 7.58951 7.65401 7.85178 8.06273 8.28678 8.41291 9.03480 9.63852 10.23039 11.08439 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014247 B = 0.003801 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.880622 B = 7363.881869 C = 8478.675738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.477 5.477 3 C 0.513 3.487 4 O -0.560 6.560 5 C -0.230 4.230 6 C -0.020 4.020 7 C -0.177 4.177 8 C 0.122 3.878 9 C 0.546 3.454 10 O -0.546 6.546 11 N -0.670 5.670 12 C 0.134 3.866 13 C 0.160 3.840 14 H 0.033 0.967 15 C -0.130 4.130 16 C -0.096 4.096 17 C -0.095 4.095 18 C -0.134 4.134 19 C -0.124 4.124 20 C 0.187 3.813 21 N -0.585 5.585 22 C -0.255 4.255 23 H 0.067 0.933 24 C 0.015 3.985 25 N -0.895 5.895 26 Si 0.886 3.114 27 H -0.284 1.284 28 H -0.289 1.289 29 H -0.279 1.279 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.150 0.850 34 H 0.142 0.858 35 H 0.159 0.841 36 H 0.419 0.581 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.045 0.955 43 H 0.051 0.949 44 H 0.041 0.959 45 H 0.048 0.952 46 H 0.065 0.935 47 H 0.030 0.970 48 H 0.044 0.956 49 H 0.018 0.982 50 H 0.088 0.912 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.366 -1.339 -5.632 6.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.188 5.188 3 C 0.314 3.686 4 O -0.444 6.444 5 C -0.252 4.252 6 C -0.042 4.042 7 C -0.202 4.202 8 C 0.012 3.988 9 C 0.330 3.670 10 O -0.427 6.427 11 N -0.321 5.321 12 C 0.011 3.989 13 C 0.053 3.947 14 H 0.051 0.949 15 C -0.170 4.170 16 C -0.133 4.133 17 C -0.097 4.097 18 C -0.192 4.192 19 C -0.181 4.181 20 C 0.062 3.938 21 N -0.309 5.309 22 C -0.385 4.385 23 H 0.084 0.916 24 C -0.185 4.185 25 N -0.538 5.538 26 Si 0.716 3.284 27 H -0.210 1.210 28 H -0.215 1.215 29 H -0.205 1.205 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.168 0.832 34 H 0.160 0.840 35 H 0.177 0.823 36 H 0.259 0.741 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.067 0.933 46 H 0.083 0.917 47 H 0.049 0.951 48 H 0.064 0.936 49 H 0.036 0.964 50 H 0.106 0.894 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.487 -0.647 -5.503 6.547 hybrid contribution 0.731 0.427 0.975 1.291 sum -2.756 -0.221 -4.528 5.305 Atomic orbital electron populations 1.22258 0.76252 1.03905 1.04929 1.45359 1.09860 1.05234 1.58388 1.17290 0.89300 0.82513 0.79450 1.90898 1.70013 1.29197 1.54274 1.22320 0.92654 1.00140 1.10076 1.21470 1.01181 0.91468 0.90038 1.21157 0.91377 1.00751 1.06873 1.20265 0.92495 0.86887 0.99198 1.17763 0.86930 0.83451 0.78884 1.90766 1.13268 1.87269 1.51382 1.45912 1.12313 1.04337 1.69520 1.21425 0.94099 0.81924 1.01483 1.20745 0.90648 0.91245 0.92071 0.94906 1.22005 0.98023 0.96021 1.00921 1.21411 0.97286 0.96852 0.97789 1.21245 0.96107 0.97877 0.94450 1.21757 0.98940 0.97186 1.01271 1.21701 0.99338 1.00047 0.97064 1.20831 0.89535 0.81876 1.01563 1.44009 1.40170 1.21242 1.25479 1.19088 0.92470 1.09718 1.17187 0.91579 1.25078 0.95417 0.98432 0.99557 1.69957 0.96883 1.45756 1.41243 0.86625 0.76863 0.81607 0.83354 1.20993 1.21465 1.20515 0.89727 0.89339 0.89516 0.83196 0.83976 0.82319 0.74128 0.91021 0.92097 0.91605 0.93035 0.92916 0.93619 0.93033 0.93986 0.93326 0.91650 0.95067 0.93638 0.96424 0.89429 0.93364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 8.93 59.85 0.53 1.55 16 2 N -0.48 -7.80 3.02 -122.81 -0.37 -8.17 16 3 C 0.51 8.70 7.43 -15.17 -0.11 8.59 16 4 O -0.56 -10.92 16.39 4.95 0.08 -10.84 16 5 C -0.23 -3.22 10.00 -39.21 -0.39 -3.61 16 6 C -0.02 -0.26 10.08 -39.53 -0.40 -0.65 16 7 C -0.18 -2.58 9.49 -39.47 -0.37 -2.95 16 8 C 0.12 1.96 6.63 -82.33 -0.55 1.42 16 9 C 0.55 9.24 7.70 -12.31 -0.09 9.15 16 10 O -0.55 -10.03 13.21 5.33 0.07 -9.96 16 11 N -0.67 -11.04 3.82 -61.24 -0.23 -11.27 16 12 C 0.13 2.17 4.43 -4.04 -0.02 2.15 16 13 C 0.16 2.67 3.00 -67.60 -0.20 2.46 16 14 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 15 C -0.13 -1.91 5.04 -26.59 -0.13 -2.05 16 16 C -0.10 -1.41 4.70 -26.67 -0.13 -1.53 16 17 C -0.10 -1.56 0.77 -154.39 -0.12 -1.68 16 18 C -0.13 -1.96 8.48 37.15 0.32 -1.64 16 19 C -0.12 -2.06 7.99 37.16 0.30 -1.76 16 20 C 0.19 3.75 3.93 -3.71 -0.01 3.74 16 21 N -0.59 -11.62 2.41 -164.78 -0.40 -12.01 16 22 C -0.26 -5.61 6.93 -15.06 -0.10 -5.71 16 23 H 0.07 1.51 5.92 -52.48 -0.31 1.20 16 24 C 0.02 0.36 5.05 -17.43 -0.09 0.27 16 25 N -0.90 -21.87 11.11 55.49 0.62 -21.26 16 26 Si 0.89 19.57 29.57 -169.99 -5.03 14.55 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 28 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 29 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 30 H 0.08 1.30 7.37 -51.93 -0.38 0.91 16 31 H 0.09 1.29 6.88 -51.93 -0.36 0.93 16 32 H 0.09 1.25 7.08 -51.93 -0.37 0.88 16 33 H 0.15 1.78 8.06 -52.48 -0.42 1.35 16 34 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.16 2.29 6.33 -52.49 -0.33 1.96 16 36 H 0.42 7.07 5.41 -40.82 -0.22 6.84 16 37 H 0.07 1.28 7.40 -51.93 -0.38 0.90 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.01 6.35 -51.93 -0.33 0.68 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 1.18 5.98 -51.93 -0.31 0.87 16 47 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.09 2.04 6.18 -51.93 -0.32 1.72 16 51 H 0.26 6.27 8.31 -40.82 -0.34 5.93 16 LS Contribution 390.32 15.07 5.88 5.88 Total: -1.00 -26.82 390.32 -8.90 -35.72 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -7.95 Total: 9.63 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -1.58 Total: 7.74 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.39 Total: -52.72 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: 0.15 Total: -20.80 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -26.82 -8.90 -35.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089690679.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.218 kcal (2) G-P(sol) polarization free energy of solvation -26.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds