Wall clock time and date at job start Wed Apr 1 2020 04:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34675 * 119.70587 * 2 1 4 4 O 1.21969 * 119.95220 * 359.97438 * 3 2 1 5 5 C 1.41225 * 120.09128 * 179.97438 * 3 2 1 6 6 C 1.36116 * 119.50932 * 0.02562 * 5 3 2 7 7 C 1.40403 * 119.41692 * 0.02562 * 6 5 3 8 8 C 1.36297 * 119.90501 * 359.97438 * 7 6 5 9 9 C 1.47885 * 119.75687 * 179.97438 * 8 7 6 10 10 O 1.21539 * 119.99869 * 174.50389 * 9 8 7 11 11 N 1.34778 * 119.99966 * 354.49665 * 9 8 7 12 12 C 1.46498 * 119.99975 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47088 * 180.02562 * 12 11 9 14 14 H 1.08994 * 109.58589 * 300.13628 * 13 12 11 15 15 C 1.53192 * 109.58475 * 179.84869 * 13 12 11 16 16 C 1.53075 * 109.29348 * 185.72055 * 15 13 12 17 17 C 1.53040 * 109.65835 * 61.15215 * 16 15 13 18 18 C 1.52994 * 109.49723 * 178.74770 * 17 16 15 19 19 C 1.53004 * 109.49680 * 58.65490 * 17 16 15 20 20 C 1.53190 * 109.31437 * 298.70202 * 17 16 15 21 21 N 1.46925 * 109.58271 * 60.41834 * 13 12 11 22 22 C 1.36932 * 120.63565 * 353.37022 * 21 13 12 23 23 H 1.08003 * 119.99993 * 32.56821 * 22 21 13 24 24 C 1.38811 * 120.00486 * 212.56785 * 22 21 13 25 25 N 1.31627 * 119.99791 * 10.14911 * 24 22 21 26 26 Si 1.86796 * 120.00436 * 190.14611 * 24 22 21 27 27 H 1.48495 * 109.47276 * 59.99594 * 26 24 22 28 28 H 1.48499 * 109.47373 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.46950 * 299.99821 * 26 24 22 30 30 H 1.08999 * 109.46887 * 244.45666 * 1 2 3 31 31 H 1.09000 * 109.47171 * 4.45788 * 1 2 3 32 32 H 1.08998 * 109.47107 * 124.45521 * 1 2 3 33 33 H 1.08004 * 120.24855 * 180.02562 * 5 3 2 34 34 H 1.07999 * 120.29081 * 180.02562 * 6 5 3 35 35 H 1.07995 * 120.04828 * 180.25783 * 7 6 5 36 36 H 0.97001 * 119.99606 * 0.02562 * 11 9 8 37 37 H 1.09003 * 109.46765 * 300.00288 * 12 11 9 38 38 H 1.08996 * 109.47143 * 60.00122 * 12 11 9 39 39 H 1.08997 * 109.49797 * 305.53088 * 15 13 12 40 40 H 1.08996 * 109.49711 * 65.63003 * 15 13 12 41 41 H 1.09000 * 109.34706 * 301.12904 * 16 15 13 42 42 H 1.09001 * 109.45351 * 181.24307 * 16 15 13 43 43 H 1.09001 * 109.47442 * 179.83954 * 18 17 16 44 44 H 1.09000 * 109.47342 * 299.83997 * 18 17 16 45 45 H 1.09000 * 109.47222 * 59.84079 * 18 17 16 46 46 H 1.09006 * 109.46756 * 300.15685 * 19 17 16 47 47 H 1.08998 * 109.47165 * 60.15297 * 19 17 16 48 48 H 1.09000 * 109.47221 * 180.16304 * 19 17 16 49 49 H 1.08998 * 109.58601 * 294.84306 * 20 17 16 50 50 H 1.09001 * 109.70182 * 174.49376 * 20 17 16 51 51 H 0.97000 * 119.99972 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1323 1.1698 0.0000 4 8 1.5162 2.2224 -0.0005 5 6 3.5446 1.1793 0.0005 6 6 4.2230 -0.0008 0.0005 7 6 3.5064 -1.2082 -0.0006 8 6 2.1436 -1.1896 -0.0011 9 6 1.3921 -2.4633 -0.0028 10 8 0.1809 -2.4543 0.0975 11 7 2.0504 -3.6339 -0.1158 12 6 1.3059 -4.8956 -0.1181 13 6 2.2836 -6.0644 -0.2566 14 1 2.8391 -5.9675 -1.1893 15 6 1.5080 -7.3855 -0.2555 16 6 2.4979 -8.5531 -0.2502 17 6 3.3580 -8.4932 1.0141 18 6 4.3246 -9.6790 1.0309 19 6 2.4560 -8.5513 2.2486 20 6 4.1542 -7.1845 1.0238 21 7 3.2190 -6.0609 0.8764 22 6 3.2196 -5.0299 1.7776 23 1 2.2979 -4.5190 2.0142 24 6 4.4047 -4.6413 2.3870 25 7 5.5531 -5.1210 1.9586 26 14 4.3698 -3.4376 3.8150 27 1 3.5663 -4.0096 4.9251 28 1 5.7559 -3.1865 4.2848 29 1 3.7594 -2.1591 3.3699 30 1 -0.3633 -0.4431 0.9272 31 1 -0.3633 1.0246 -0.0799 32 1 -0.3633 -0.5814 -0.8474 33 1 4.0824 2.1159 0.0010 34 1 5.3029 -0.0083 0.0014 35 1 4.0343 -2.1503 0.0036 36 1 3.0171 -3.6409 -0.1956 37 1 0.7535 -4.9932 0.8165 38 1 0.6080 -4.9042 -0.9552 39 1 0.8811 -7.4386 0.6346 40 1 0.8818 -7.4405 -1.1459 41 1 3.1392 -8.4868 -1.1291 42 1 1.9489 -9.4945 -0.2717 43 1 4.9390 -9.6344 1.9301 44 1 3.7577 -10.6100 1.0240 45 1 4.9658 -9.6376 0.1504 46 1 1.7668 -7.7069 2.2351 47 1 1.8897 -9.4826 2.2413 48 1 3.0688 -8.5057 3.1489 49 1 4.8624 -7.1815 0.1953 50 1 4.6938 -7.0896 1.9661 51 1 6.3812 -4.8498 2.3847 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089690679.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:52 Heat of formation + Delta-G solvation = -26.917074 kcal Electronic energy + Delta-G solvation = -32735.789529 eV Core-core repulsion = 28635.775537 eV Total energy + Delta-G solvation = -4100.013992 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.63613 -40.79095 -39.90606 -37.88908 -36.85290 -35.58759 -34.92133 -33.82382 -31.69309 -31.46238 -28.80358 -28.61682 -27.97992 -27.27359 -26.08176 -24.71047 -23.82479 -23.57084 -21.84216 -21.64184 -19.45250 -19.23606 -18.51831 -18.09976 -17.82413 -17.49270 -17.07495 -16.83281 -16.47896 -16.06239 -15.68582 -15.61354 -15.31413 -15.29528 -14.95491 -14.68998 -14.52992 -14.26148 -13.94520 -13.74530 -13.72240 -13.48839 -13.16157 -13.08764 -12.97850 -12.88560 -12.74114 -12.71357 -12.47353 -12.45360 -12.21079 -12.07492 -11.83164 -11.58294 -11.41482 -11.21086 -11.17218 -10.98843 -10.86065 -10.78345 -10.43903 -9.95544 -9.17322 -8.43959 -7.75600 -5.24214 -0.65010 0.55689 1.35210 1.43337 1.50556 1.53357 1.74523 2.17358 2.52294 2.56293 3.36878 3.43851 3.52582 3.66041 3.84073 4.01677 4.09007 4.10448 4.21439 4.25362 4.36565 4.37711 4.42818 4.45829 4.57768 4.69279 4.73406 4.77952 4.83778 4.90864 4.94589 4.97727 4.98728 5.09817 5.14044 5.15492 5.18890 5.21388 5.29763 5.31696 5.43638 5.45856 5.55813 5.61345 5.67124 5.78070 5.85335 5.87539 5.96548 6.49069 6.53583 6.78431 7.06132 7.27604 7.95908 8.50362 9.27147 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014247 B = 0.003801 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.880622 B = 7363.881869 C = 8478.675738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.481 5.481 3 C 0.499 3.501 4 O -0.595 6.595 5 C -0.227 4.227 6 C -0.010 4.010 7 C -0.165 4.165 8 C 0.101 3.899 9 C 0.546 3.454 10 O -0.564 6.564 11 N -0.669 5.669 12 C 0.139 3.861 13 C 0.160 3.840 14 H 0.036 0.964 15 C -0.125 4.125 16 C -0.092 4.092 17 C -0.092 4.092 18 C -0.129 4.129 19 C -0.117 4.117 20 C 0.197 3.803 21 N -0.595 5.595 22 C -0.232 4.232 23 H 0.059 0.941 24 C -0.017 4.017 25 N -0.916 5.916 26 Si 0.921 3.079 27 H -0.299 1.299 28 H -0.296 1.296 29 H -0.277 1.277 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.174 0.826 34 H 0.181 0.819 35 H 0.161 0.839 36 H 0.417 0.583 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.040 0.960 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.048 0.952 47 H 0.056 0.944 48 H 0.027 0.973 49 H -0.003 1.003 50 H 0.050 0.950 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.497 -2.427 -6.883 7.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.192 5.192 3 C 0.302 3.698 4 O -0.482 6.482 5 C -0.249 4.249 6 C -0.031 4.031 7 C -0.190 4.190 8 C -0.009 4.009 9 C 0.331 3.669 10 O -0.445 6.445 11 N -0.320 5.320 12 C 0.015 3.985 13 C 0.054 3.946 14 H 0.054 0.946 15 C -0.164 4.164 16 C -0.129 4.129 17 C -0.094 4.094 18 C -0.187 4.187 19 C -0.175 4.175 20 C 0.071 3.929 21 N -0.319 5.319 22 C -0.363 4.363 23 H 0.076 0.924 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.752 3.248 27 H -0.226 1.226 28 H -0.222 1.222 29 H -0.203 1.203 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.191 0.809 34 H 0.198 0.802 35 H 0.179 0.821 36 H 0.257 0.743 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.059 0.941 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.046 0.954 49 H 0.015 0.985 50 H 0.068 0.932 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.628 -1.766 -6.765 7.877 hybrid contribution 0.751 0.720 1.355 1.709 sum -2.877 -1.046 -5.410 6.216 Atomic orbital electron populations 1.22211 0.76029 1.03916 1.04720 1.45413 1.10243 1.05320 1.58242 1.17816 0.90474 0.82107 0.79375 1.90874 1.70840 1.30205 1.56302 1.22544 0.91207 1.01715 1.09412 1.21815 1.02926 0.90023 0.88375 1.21380 0.90912 1.01750 1.04943 1.20227 0.93014 0.86354 1.01298 1.17894 0.86780 0.83827 0.78364 1.90752 1.13999 1.87561 1.52235 1.45895 1.12168 1.04470 1.69417 1.21416 0.94058 0.81598 1.01384 1.20888 0.90195 0.92820 0.90679 0.94604 1.21958 0.97925 0.94482 1.02057 1.21389 0.97092 0.97934 0.96512 1.21158 0.96302 0.96363 0.95585 1.21710 0.98707 0.97331 1.00959 1.21623 0.98871 1.00605 0.96371 1.20580 0.89631 0.84010 0.98651 1.44136 1.40546 1.20832 1.26338 1.19061 0.91625 1.09037 1.16531 0.92359 1.25328 0.95564 0.99691 1.00858 1.70047 0.96862 1.47117 1.42165 0.86091 0.75895 0.80913 0.81918 1.22608 1.22207 1.20332 0.90385 0.89241 0.89114 0.80876 0.80189 0.82127 0.74345 0.92818 0.90025 0.92188 0.90152 0.92668 0.91212 0.94094 0.91627 0.92999 0.93342 0.92522 0.95390 0.98500 0.93154 0.94182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.18 8.93 127.77 1.14 3.32 16 2 N -0.48 -15.59 3.02 -660.61 -1.99 -17.58 16 3 C 0.50 16.61 7.43 84.99 0.63 17.24 16 4 O -0.60 -23.22 16.39 -5.21 -0.09 -23.31 16 5 C -0.23 -5.88 10.00 22.51 0.23 -5.66 16 6 C -0.01 -0.23 10.08 22.30 0.22 -0.01 16 7 C -0.17 -4.55 9.49 22.34 0.21 -4.33 16 8 C 0.10 3.17 6.63 40.45 0.27 3.43 16 9 C 0.55 18.23 7.70 86.80 0.67 18.90 16 10 O -0.56 -20.51 13.21 -3.84 -0.05 -20.56 16 11 N -0.67 -21.53 3.82 -465.94 -1.78 -23.31 16 12 C 0.14 4.30 4.43 86.38 0.38 4.68 16 13 C 0.16 5.07 3.00 44.98 0.14 5.21 16 14 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 15 C -0.12 -3.30 5.04 30.68 0.15 -3.15 16 16 C -0.09 -2.40 4.70 30.63 0.14 -2.26 16 17 C -0.09 -2.88 0.77 -52.11 -0.04 -2.92 16 18 C -0.13 -3.53 8.48 71.98 0.61 -2.92 16 19 C -0.12 -3.72 7.99 71.98 0.58 -3.15 16 20 C 0.20 7.89 3.93 86.36 0.34 8.23 16 21 N -0.59 -23.36 2.41 -675.23 -1.63 -24.99 16 22 C -0.23 -10.21 6.93 84.03 0.58 -9.63 16 23 H 0.06 2.68 5.92 -2.91 -0.02 2.66 16 24 C -0.02 -0.80 5.05 84.86 0.43 -0.37 16 25 N -0.92 -45.51 11.11 21.65 0.24 -45.27 16 26 Si 0.92 40.53 29.57 68.60 2.03 42.56 16 27 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 28 H -0.30 -13.29 7.11 99.48 0.71 -12.58 16 29 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 30 H 0.08 2.43 7.37 -2.39 -0.02 2.42 16 31 H 0.09 2.66 6.88 -2.39 -0.02 2.64 16 32 H 0.09 2.63 7.08 -2.39 -0.02 2.61 16 33 H 0.17 3.63 8.06 -2.91 -0.02 3.60 16 34 H 0.18 2.78 8.06 -2.91 -0.02 2.75 16 35 H 0.16 4.40 6.33 -2.91 -0.02 4.38 16 36 H 0.42 13.76 5.41 -92.71 -0.50 13.26 16 37 H 0.05 1.88 7.40 -2.39 -0.02 1.86 16 38 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.06 1.69 6.35 -2.39 -0.02 1.68 16 40 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.04 1.18 8.14 -2.39 -0.02 1.17 16 44 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.05 1.69 5.98 -2.38 -0.01 1.67 16 47 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 50 H 0.05 2.40 6.18 -2.39 -0.01 2.39 16 51 H 0.25 12.40 8.31 -92.71 -0.77 11.63 16 Total: -1.00 -58.82 390.32 3.85 -54.96 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: 0.44 Total: 30.88 kcal Atomic # 6 Polarization: 19.94 SS G_CDS: 6.68 Total: 26.62 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -5.16 Total: -111.15 kcal Atomic # 8 Polarization: -43.74 SS G_CDS: -0.14 Total: -43.87 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -58.82 3.85 -54.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089690679.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.044 kcal (2) G-P(sol) polarization free energy of solvation -58.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds