Wall clock time and date at job start Wed Apr 1 2020 04:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.49613 * 2 1 4 4 C 1.53038 * 109.49714 * 120.06297 * 2 1 3 5 5 C 1.53038 * 109.53588 * 58.58865 * 4 2 1 6 6 C 1.53195 * 109.31394 * 61.36699 * 5 4 2 7 7 H 1.08991 * 109.58792 * 65.28922 * 6 5 4 8 8 C 1.52994 * 109.58689 * 185.57942 * 6 5 4 9 9 N 1.46502 * 109.47205 * 179.88594 * 8 6 5 10 10 C 1.34782 * 120.00052 * 179.97438 * 9 8 6 11 11 O 1.21610 * 119.99917 * 0.02562 * 10 9 8 12 12 C 1.47398 * 119.99689 * 179.97438 * 10 9 8 13 13 C 1.37349 * 128.56765 * 359.68620 * 12 10 9 14 14 O 1.33492 * 106.34448 * 179.85198 * 13 12 10 15 15 N 1.20658 * 113.15385 * 0.44649 * 14 13 12 16 16 C 1.30014 * 112.30206 * 359.72280 * 15 14 13 17 17 C 1.50704 * 127.33880 * 180.02562 * 16 15 14 18 18 C 1.53005 * 117.49446 * 8.57288 * 17 16 15 19 19 C 1.53003 * 117.49392 * 299.95415 * 17 16 15 20 20 N 1.46932 * 108.76970 * 305.36359 * 6 5 4 21 21 C 1.36941 * 120.62488 * 233.60648 * 20 6 5 22 22 H 1.08005 * 119.99967 * 49.54215 * 21 20 6 23 23 C 1.38810 * 119.99844 * 229.53272 * 21 20 6 24 24 N 1.31623 * 119.99862 * 188.54485 * 23 21 20 25 25 Si 1.86798 * 120.00270 * 8.54848 * 23 21 20 26 26 H 1.48503 * 109.47250 * 84.39342 * 25 23 21 27 27 H 1.48493 * 109.47157 * 204.39972 * 25 23 21 28 28 H 1.48500 * 109.46911 * 324.39783 * 25 23 21 29 29 C 1.46918 * 118.74374 * 53.60891 * 20 6 5 30 30 H 1.09001 * 109.46906 * 299.93675 * 1 2 3 31 31 H 1.08999 * 109.46934 * 59.93609 * 1 2 3 32 32 H 1.08994 * 109.46674 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46924 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47224 * 300.06530 * 3 2 1 35 35 H 1.09003 * 109.47230 * 60.06349 * 3 2 1 36 36 H 1.09001 * 109.46235 * 298.56704 * 4 2 1 37 37 H 1.09000 * 109.44819 * 178.60319 * 4 2 1 38 38 H 1.08992 * 109.50108 * 301.40983 * 5 4 2 39 39 H 1.09002 * 109.52140 * 181.33180 * 5 4 2 40 40 H 1.09008 * 109.47082 * 299.88391 * 8 6 5 41 41 H 1.09002 * 109.47592 * 59.88492 * 8 6 5 42 42 H 0.96996 * 119.99605 * 359.97438 * 9 8 6 43 43 H 1.08003 * 126.83126 * 359.97438 * 13 12 10 44 44 H 1.08994 * 115.55390 * 154.27989 * 17 16 15 45 45 H 1.08996 * 117.49852 * 0.02562 * 18 17 16 46 46 H 1.08996 * 117.49502 * 145.02440 * 18 17 16 47 47 H 1.09004 * 117.49393 * 214.97830 * 19 17 16 48 48 H 1.08993 * 117.50246 * 359.97438 * 19 17 16 49 49 H 0.97000 * 119.99829 * 180.02562 * 24 23 21 50 50 H 1.08995 * 109.59170 * 186.60329 * 29 20 6 51 51 H 1.09004 * 109.70281 * 66.24697 * 29 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 6 2.0408 -0.7227 1.2486 5 6 1.5030 -2.1553 1.2666 6 6 2.0141 -2.9040 0.0316 7 1 3.0977 -3.0064 0.0888 8 6 1.3704 -4.2905 -0.0306 9 7 1.8587 -5.0031 -1.2138 10 6 1.4253 -6.2523 -1.4748 11 8 0.6285 -6.7878 -0.7283 12 6 1.9162 -6.9690 -2.6656 13 6 2.8022 -6.5352 -3.6212 14 8 2.9339 -7.5369 -4.4938 15 7 2.2604 -8.4990 -4.2167 16 6 1.5733 -8.3230 -3.1271 17 6 0.6275 -9.2986 -2.4753 18 6 0.5868 -10.7228 -3.0330 19 6 -0.5788 -9.7661 -3.2922 20 7 1.6516 -2.1384 -1.1690 21 6 0.9636 -2.7319 -2.1935 22 1 0.0705 -3.3023 -1.9851 23 6 1.4140 -2.6002 -3.4999 24 7 0.6688 -3.0237 -4.4988 25 14 3.0777 -1.8220 -3.8404 26 1 4.1407 -2.8514 -3.7148 27 1 3.0903 -1.2625 -5.2158 28 1 3.3247 -0.7335 -2.8609 29 6 2.0413 -0.7241 -1.2494 30 1 -0.3633 0.5129 0.8906 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3632 -1.0276 -0.0005 33 1 3.1307 1.4418 -0.0005 34 1 1.6766 1.9567 -0.8894 35 1 1.6785 1.9560 0.8906 36 1 1.6988 -0.1952 2.1390 37 1 3.1305 -0.7440 1.2353 38 1 0.4134 -2.1351 1.2547 39 1 1.8476 -2.6624 2.1678 40 1 1.6318 -4.8529 0.8659 41 1 0.2871 -4.1859 -0.0908 42 1 2.4940 -4.5758 -1.8094 43 1 3.2960 -5.5753 -3.6583 44 1 0.4903 -9.1743 -1.4012 45 1 1.2443 -10.9542 -3.8709 46 1 0.4228 -11.5357 -2.3256 47 1 -1.5095 -9.9496 -2.7554 48 1 -0.6885 -9.3677 -4.3008 49 1 0.9837 -2.9320 -5.4116 50 1 1.6007 -0.2736 -2.1388 51 1 3.1273 -0.6444 -1.2992 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089690801.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:58 Heat of formation + Delta-G solvation = 70.907842 kcal Electronic energy + Delta-G solvation = -32483.646768 eV Core-core repulsion = 28387.874783 eV Total energy + Delta-G solvation = -4095.771985 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.58537 -39.39161 -38.49310 -37.30217 -35.18162 -33.23639 -32.96457 -32.29831 -31.38515 -30.87779 -27.76575 -26.82244 -25.62078 -24.88719 -24.05779 -23.00886 -22.51359 -22.29012 -20.36651 -20.04200 -19.66486 -18.44477 -17.91279 -17.35636 -16.69136 -16.14828 -15.54093 -15.38737 -15.26125 -14.98228 -14.47405 -14.19550 -14.05118 -13.81313 -13.61760 -13.51683 -13.10545 -12.84278 -12.59701 -12.44131 -11.95380 -11.91490 -11.64286 -11.59736 -11.53701 -11.43263 -11.40361 -11.19259 -11.11827 -10.95790 -10.83247 -10.67220 -10.42899 -10.34284 -9.97547 -9.77212 -9.68803 -9.46818 -9.38549 -9.33600 -9.31595 -8.63550 -8.25562 -6.70011 -6.08823 -3.71427 1.47246 2.00011 3.14811 3.25108 3.32745 3.35738 3.68691 3.82695 4.00620 4.24025 4.36933 4.47802 4.79412 5.00030 5.06821 5.09700 5.19141 5.22817 5.26379 5.29466 5.32315 5.45972 5.56038 5.65844 5.69253 5.81287 5.81912 5.86571 5.93368 5.98259 6.01782 6.09697 6.12344 6.16040 6.19200 6.26144 6.27293 6.30147 6.31989 6.34687 6.48862 6.54966 6.66872 6.71074 6.81434 6.88313 7.05296 7.12016 7.97894 8.18411 8.36509 8.46875 8.81752 8.83867 9.53535 10.03003 11.03575 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.003613 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.574473 B = 7748.839741 C = 8786.990289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 C -0.138 4.138 4 C -0.096 4.096 5 C -0.130 4.130 6 C 0.159 3.841 7 H 0.035 0.965 8 C 0.141 3.859 9 N -0.680 5.680 10 C 0.593 3.407 11 O -0.553 6.553 12 C -0.232 4.232 13 C 0.003 3.997 14 O 0.091 5.909 15 N -0.365 5.365 16 C 0.097 3.903 17 C -0.078 4.078 18 C -0.170 4.170 19 C -0.158 4.158 20 N -0.601 5.601 21 C -0.262 4.262 22 H 0.077 0.923 23 C 0.043 3.957 24 N -0.898 5.898 25 Si 0.839 3.161 26 H -0.286 1.286 27 H -0.299 1.299 28 H -0.235 1.235 29 C 0.151 3.849 30 H 0.034 0.966 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.406 0.594 43 H 0.222 0.778 44 H 0.138 0.862 45 H 0.099 0.901 46 H 0.100 0.900 47 H 0.103 0.897 48 H 0.095 0.905 49 H 0.264 0.736 50 H 0.064 0.936 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.406 -2.453 7.003 8.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.091 4.091 3 C -0.195 4.195 4 C -0.134 4.134 5 C -0.170 4.170 6 C 0.053 3.947 7 H 0.053 0.947 8 C 0.017 3.983 9 N -0.330 5.330 10 C 0.379 3.621 11 O -0.434 6.434 12 C -0.239 4.239 13 C -0.079 4.079 14 O 0.032 5.968 15 N -0.073 5.073 16 C -0.066 4.066 17 C -0.097 4.097 18 C -0.207 4.207 19 C -0.196 4.196 20 N -0.327 5.327 21 C -0.391 4.391 22 H 0.094 0.906 23 C -0.159 4.159 24 N -0.538 5.538 25 Si 0.667 3.333 26 H -0.213 1.213 27 H -0.226 1.226 28 H -0.159 1.159 29 C 0.026 3.974 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.243 0.757 43 H 0.238 0.762 44 H 0.156 0.844 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.122 0.878 48 H 0.114 0.886 49 H 0.074 0.926 50 H 0.082 0.918 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 3.975 -3.809 6.440 8.472 hybrid contribution 0.976 1.551 -0.250 1.850 sum 4.952 -2.258 6.190 8.242 Atomic orbital electron populations 1.21719 0.94467 1.02546 0.99629 1.21123 0.96355 0.94222 0.97353 1.21813 1.00343 0.96404 1.00985 1.21412 0.99603 0.95489 0.96888 1.21987 1.01675 0.95766 0.97561 1.20854 0.96010 0.89742 0.88081 0.94729 1.21232 0.99939 0.90974 0.86140 1.45661 1.46210 1.13457 1.27632 1.16707 0.81080 0.81365 0.82960 1.90704 1.34958 1.68188 1.49520 1.22286 1.04651 0.95859 1.01142 1.26388 0.98174 0.94665 0.88714 1.84523 1.50685 1.17888 1.43697 1.73527 1.08920 1.08146 1.16722 1.23756 0.97771 0.93323 0.91709 1.20302 0.97311 0.92471 0.99568 1.23027 1.02066 0.92088 1.03536 1.22995 0.92835 1.02555 1.01248 1.44318 1.66165 1.04812 1.17359 1.18668 1.05631 1.30293 0.84489 0.90576 1.25759 0.96987 0.96946 0.96176 1.69792 1.37159 1.47853 0.98960 0.87787 0.85671 0.81851 0.77947 1.21329 1.22602 1.15931 1.21723 0.96192 0.84736 0.94763 0.94644 0.93449 0.91240 0.93324 0.92989 0.93424 0.93131 0.92851 0.91247 0.92720 0.92453 0.91138 0.75685 0.76192 0.84435 0.88277 0.88147 0.87848 0.88634 0.92618 0.91792 0.95253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 7.99 37.16 0.30 -1.71 16 2 C -0.09 -1.36 0.77 -154.39 -0.12 -1.48 16 3 C -0.14 -1.83 8.48 37.16 0.32 -1.52 16 4 C -0.10 -1.33 4.71 -26.69 -0.13 -1.46 16 5 C -0.13 -1.88 5.03 -26.61 -0.13 -2.01 16 6 C 0.16 2.65 3.01 -67.60 -0.20 2.45 16 7 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 8 C 0.14 2.47 4.49 -4.04 -0.02 2.45 16 9 N -0.68 -12.63 4.15 -61.39 -0.25 -12.89 16 10 C 0.59 11.71 7.81 -12.53 -0.10 11.61 16 11 O -0.55 -11.97 15.80 5.27 0.08 -11.89 16 12 C -0.23 -4.27 6.47 -102.90 -0.67 -4.93 16 13 C 0.00 0.04 11.85 30.41 0.36 0.40 16 14 O 0.09 1.51 11.06 18.65 0.21 1.72 16 15 N -0.37 -6.36 11.71 34.78 0.41 -5.96 16 16 C 0.10 1.71 7.08 -79.76 -0.56 1.14 16 17 C -0.08 -1.20 5.90 -91.77 -0.54 -1.74 16 18 C -0.17 -2.11 10.16 -26.73 -0.27 -2.38 16 19 C -0.16 -2.14 10.23 -26.73 -0.27 -2.41 16 20 N -0.60 -11.68 1.85 -164.78 -0.30 -11.99 16 21 C -0.26 -6.07 6.62 -15.06 -0.10 -6.17 16 22 H 0.08 2.07 7.10 -52.48 -0.37 1.70 16 23 C 0.04 1.06 5.30 -17.43 -0.09 0.96 16 24 N -0.90 -24.38 13.97 55.49 0.78 -23.61 16 25 Si 0.84 18.16 26.63 -169.99 -4.53 13.63 16 26 H -0.29 -5.98 7.11 56.52 0.40 -5.57 16 27 H -0.30 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.23 -4.73 3.87 56.52 0.22 -4.52 16 29 C 0.15 2.78 2.70 -3.72 -0.01 2.77 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.23 5.97 -51.93 -0.31 0.92 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.06 6.33 -51.93 -0.33 0.73 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 41 H 0.07 1.40 7.44 -51.93 -0.39 1.01 16 42 H 0.41 7.56 6.56 -40.82 -0.27 7.29 16 43 H 0.22 3.19 7.68 -52.48 -0.40 2.79 16 44 H 0.14 2.19 7.29 -51.93 -0.38 1.81 16 45 H 0.10 1.27 7.97 -51.93 -0.41 0.86 16 46 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 49 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 50 H 0.06 1.32 6.50 -51.93 -0.34 0.98 16 51 H 0.03 0.55 6.36 -51.93 -0.33 0.22 16 LS Contribution 395.22 15.07 5.96 5.96 Total: -1.00 -27.74 395.22 -8.24 -35.98 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -8.34 Total: 13.05 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -2.24 Total: -4.02 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: 0.62 Total: -54.43 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.29 Total: -10.17 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -4.53 Total: 13.63 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -27.74 -8.24 -35.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089690801.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.891 kcal (2) G-P(sol) polarization free energy of solvation -27.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds