Wall clock time and date at job start Wed Apr 1 2020 04:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.49613 * 2 1 4 4 C 1.53038 * 109.49714 * 120.06297 * 2 1 3 5 5 C 1.53038 * 109.53588 * 58.58865 * 4 2 1 6 6 C 1.53195 * 109.31394 * 61.36699 * 5 4 2 7 7 H 1.08991 * 109.58792 * 65.28922 * 6 5 4 8 8 C 1.52994 * 109.58689 * 185.57942 * 6 5 4 9 9 N 1.46502 * 109.47205 * 179.88594 * 8 6 5 10 10 C 1.34782 * 120.00052 * 179.97438 * 9 8 6 11 11 O 1.21610 * 119.99917 * 0.02562 * 10 9 8 12 12 C 1.47398 * 119.99689 * 179.97438 * 10 9 8 13 13 C 1.37349 * 128.56765 * 359.68620 * 12 10 9 14 14 O 1.33492 * 106.34448 * 179.85198 * 13 12 10 15 15 N 1.20658 * 113.15385 * 0.44649 * 14 13 12 16 16 C 1.30014 * 112.30206 * 359.72280 * 15 14 13 17 17 C 1.50704 * 127.33880 * 180.02562 * 16 15 14 18 18 C 1.53005 * 117.49446 * 8.57288 * 17 16 15 19 19 C 1.53003 * 117.49392 * 299.95415 * 17 16 15 20 20 N 1.46932 * 108.76970 * 305.36359 * 6 5 4 21 21 C 1.36941 * 120.62488 * 233.60648 * 20 6 5 22 22 H 1.08005 * 119.99967 * 49.54215 * 21 20 6 23 23 C 1.38810 * 119.99844 * 229.53272 * 21 20 6 24 24 N 1.31623 * 119.99862 * 188.54485 * 23 21 20 25 25 Si 1.86798 * 120.00270 * 8.54848 * 23 21 20 26 26 H 1.48503 * 109.47250 * 84.39342 * 25 23 21 27 27 H 1.48493 * 109.47157 * 204.39972 * 25 23 21 28 28 H 1.48500 * 109.46911 * 324.39783 * 25 23 21 29 29 C 1.46918 * 118.74374 * 53.60891 * 20 6 5 30 30 H 1.09001 * 109.46906 * 299.93675 * 1 2 3 31 31 H 1.08999 * 109.46934 * 59.93609 * 1 2 3 32 32 H 1.08994 * 109.46674 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46924 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47224 * 300.06530 * 3 2 1 35 35 H 1.09003 * 109.47230 * 60.06349 * 3 2 1 36 36 H 1.09001 * 109.46235 * 298.56704 * 4 2 1 37 37 H 1.09000 * 109.44819 * 178.60319 * 4 2 1 38 38 H 1.08992 * 109.50108 * 301.40983 * 5 4 2 39 39 H 1.09002 * 109.52140 * 181.33180 * 5 4 2 40 40 H 1.09008 * 109.47082 * 299.88391 * 8 6 5 41 41 H 1.09002 * 109.47592 * 59.88492 * 8 6 5 42 42 H 0.96996 * 119.99605 * 359.97438 * 9 8 6 43 43 H 1.08003 * 126.83126 * 359.97438 * 13 12 10 44 44 H 1.08994 * 115.55390 * 154.27989 * 17 16 15 45 45 H 1.08996 * 117.49852 * 0.02562 * 18 17 16 46 46 H 1.08996 * 117.49502 * 145.02440 * 18 17 16 47 47 H 1.09004 * 117.49393 * 214.97830 * 19 17 16 48 48 H 1.08993 * 117.50246 * 359.97438 * 19 17 16 49 49 H 0.97000 * 119.99829 * 180.02562 * 24 23 21 50 50 H 1.08995 * 109.59170 * 186.60329 * 29 20 6 51 51 H 1.09004 * 109.70281 * 66.24697 * 29 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 6 2.0408 -0.7227 1.2486 5 6 1.5030 -2.1553 1.2666 6 6 2.0141 -2.9040 0.0316 7 1 3.0977 -3.0064 0.0888 8 6 1.3704 -4.2905 -0.0306 9 7 1.8587 -5.0031 -1.2138 10 6 1.4253 -6.2523 -1.4748 11 8 0.6285 -6.7878 -0.7283 12 6 1.9162 -6.9690 -2.6656 13 6 2.8022 -6.5352 -3.6212 14 8 2.9339 -7.5369 -4.4938 15 7 2.2604 -8.4990 -4.2167 16 6 1.5733 -8.3230 -3.1271 17 6 0.6275 -9.2986 -2.4753 18 6 0.5868 -10.7228 -3.0330 19 6 -0.5788 -9.7661 -3.2922 20 7 1.6516 -2.1384 -1.1690 21 6 0.9636 -2.7319 -2.1935 22 1 0.0705 -3.3023 -1.9851 23 6 1.4140 -2.6002 -3.4999 24 7 0.6688 -3.0237 -4.4988 25 14 3.0777 -1.8220 -3.8404 26 1 4.1407 -2.8514 -3.7148 27 1 3.0903 -1.2625 -5.2158 28 1 3.3247 -0.7335 -2.8609 29 6 2.0413 -0.7241 -1.2494 30 1 -0.3633 0.5129 0.8906 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3632 -1.0276 -0.0005 33 1 3.1307 1.4418 -0.0005 34 1 1.6766 1.9567 -0.8894 35 1 1.6785 1.9560 0.8906 36 1 1.6988 -0.1952 2.1390 37 1 3.1305 -0.7440 1.2353 38 1 0.4134 -2.1351 1.2547 39 1 1.8476 -2.6624 2.1678 40 1 1.6318 -4.8529 0.8659 41 1 0.2871 -4.1859 -0.0908 42 1 2.4940 -4.5758 -1.8094 43 1 3.2960 -5.5753 -3.6583 44 1 0.4903 -9.1743 -1.4012 45 1 1.2443 -10.9542 -3.8709 46 1 0.4228 -11.5357 -2.3256 47 1 -1.5095 -9.9496 -2.7554 48 1 -0.6885 -9.3677 -4.3008 49 1 0.9837 -2.9320 -5.4116 50 1 1.6007 -0.2736 -2.1388 51 1 3.1273 -0.6444 -1.2992 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089690801.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:57 Heat of formation + Delta-G solvation = 56.197996 kcal Electronic energy + Delta-G solvation = -32484.284635 eV Core-core repulsion = 28387.874783 eV Total energy + Delta-G solvation = -4096.409852 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.95609 -40.85483 -39.94086 -38.45200 -36.63335 -34.90309 -34.39493 -33.70832 -32.79892 -32.46783 -29.08851 -28.05547 -27.25453 -26.26038 -25.33538 -24.54489 -23.82826 -23.34557 -21.83375 -21.46165 -21.04028 -19.82366 -19.36172 -18.73179 -18.25364 -17.59307 -17.07244 -16.88698 -16.60972 -16.40189 -15.78011 -15.59212 -15.47955 -15.25899 -14.98970 -14.80095 -14.57717 -14.28729 -14.11541 -13.93677 -13.30906 -13.15658 -13.03359 -12.80098 -12.76558 -12.71413 -12.64825 -12.57159 -12.50681 -12.35037 -12.24986 -12.04439 -11.91086 -11.51159 -11.39291 -11.20706 -11.08081 -11.00298 -10.85302 -10.79628 -10.56877 -10.38121 -9.83242 -8.36803 -8.01329 -5.62156 0.06810 0.63616 1.41826 1.55217 1.59388 1.87382 2.19991 2.42098 2.54474 2.80249 2.94216 3.21185 3.22626 3.36565 3.83814 3.86331 3.94379 3.99344 4.00441 4.04219 4.06509 4.12887 4.30650 4.40552 4.50713 4.51610 4.64512 4.65564 4.70760 4.78313 4.81153 4.90261 4.91737 4.93502 5.03221 5.08297 5.10254 5.11231 5.15293 5.15916 5.17714 5.24512 5.33697 5.49639 5.50875 5.59640 5.63617 5.78844 6.09032 6.42376 6.63925 7.10015 7.11097 7.26859 7.70154 8.22009 9.14179 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.003613 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.574473 B = 7748.839741 C = 8786.990289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.087 4.087 3 C -0.133 4.133 4 C -0.091 4.091 5 C -0.126 4.126 6 C 0.160 3.840 7 H 0.055 0.945 8 C 0.143 3.857 9 N -0.677 5.677 10 C 0.590 3.410 11 O -0.579 6.579 12 C -0.263 4.263 13 C 0.020 3.980 14 O 0.093 5.907 15 N -0.373 5.373 16 C 0.091 3.909 17 C -0.107 4.107 18 C -0.141 4.141 19 C -0.158 4.158 20 N -0.608 5.608 21 C -0.227 4.227 22 H 0.026 0.974 23 C -0.001 4.001 24 N -0.951 5.951 25 Si 0.888 3.112 26 H -0.267 1.267 27 H -0.324 1.324 28 H -0.208 1.208 29 C 0.148 3.852 30 H 0.059 0.941 31 H 0.030 0.970 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.044 0.956 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.038 0.962 42 H 0.407 0.593 43 H 0.241 0.759 44 H 0.129 0.871 45 H 0.096 0.904 46 H 0.130 0.870 47 H 0.122 0.878 48 H 0.083 0.917 49 H 0.257 0.743 50 H 0.036 0.964 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.550 -1.677 9.242 11.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.089 4.089 3 C -0.191 4.191 4 C -0.129 4.129 5 C -0.165 4.165 6 C 0.055 3.945 7 H 0.072 0.928 8 C 0.019 3.981 9 N -0.326 5.326 10 C 0.376 3.624 11 O -0.462 6.462 12 C -0.270 4.270 13 C -0.062 4.062 14 O 0.035 5.965 15 N -0.081 5.081 16 C -0.071 4.071 17 C -0.126 4.126 18 C -0.178 4.178 19 C -0.196 4.196 20 N -0.334 5.334 21 C -0.358 4.358 22 H 0.043 0.957 23 C -0.198 4.198 24 N -0.594 5.594 25 Si 0.715 3.285 26 H -0.193 1.193 27 H -0.253 1.253 28 H -0.132 1.132 29 C 0.023 3.977 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.056 0.944 42 H 0.243 0.757 43 H 0.257 0.743 44 H 0.147 0.853 45 H 0.115 0.885 46 H 0.148 0.852 47 H 0.140 0.860 48 H 0.101 0.899 49 H 0.066 0.934 50 H 0.055 0.945 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.154 -3.012 8.730 11.097 hybrid contribution 0.191 1.320 -0.891 1.604 sum 6.345 -1.692 7.839 10.225 Atomic orbital electron populations 1.21658 0.95344 1.00873 0.99988 1.21079 0.95567 0.95645 0.96571 1.21768 1.01034 0.94602 1.01701 1.21404 1.00316 0.94536 0.96624 1.21948 1.00844 0.96512 0.97222 1.21017 0.96899 0.88840 0.87741 0.92754 1.21284 0.98118 0.92107 0.86548 1.45669 1.45861 1.13154 1.27879 1.16927 0.80703 0.81618 0.83121 1.90672 1.36125 1.68846 1.50537 1.22329 1.06281 0.96747 1.01669 1.26678 0.97024 0.94867 0.87647 1.84511 1.50524 1.17860 1.43568 1.73507 1.09338 1.08429 1.16840 1.24144 0.97817 0.93478 0.91627 1.20386 0.98571 0.94415 0.99250 1.23118 1.00387 0.91086 1.03256 1.23080 0.93505 1.02629 1.00394 1.44354 1.65929 1.05792 1.17355 1.18193 1.03676 1.28401 0.85485 0.95654 1.26219 0.99933 0.97953 0.95741 1.69962 1.39287 1.51035 0.99130 0.86996 0.82355 0.82315 0.76785 1.19272 1.25327 1.13162 1.21714 0.96427 0.83961 0.95589 0.92242 0.95118 0.93906 0.92171 0.93693 0.91412 0.90819 0.91509 0.92711 0.89878 0.90375 0.94369 0.75673 0.74338 0.85304 0.88545 0.85186 0.86012 0.89867 0.93397 0.94543 0.94307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.71 7.99 71.98 0.57 -3.13 16 2 C -0.09 -2.43 0.77 -52.10 -0.04 -2.47 16 3 C -0.13 -3.05 8.48 71.98 0.61 -2.44 16 4 C -0.09 -2.13 4.71 30.62 0.14 -1.98 16 5 C -0.13 -3.26 5.03 30.67 0.15 -3.10 16 6 C 0.16 5.04 3.01 44.97 0.14 5.18 16 7 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 8 C 0.14 5.00 4.49 86.38 0.39 5.39 16 9 N -0.68 -25.49 4.15 -466.38 -1.93 -27.43 16 10 C 0.59 24.00 7.81 86.65 0.68 24.67 16 11 O -0.58 -25.98 15.80 -4.06 -0.06 -26.05 16 12 C -0.26 -9.90 6.47 -18.75 -0.12 -10.03 16 13 C 0.02 0.66 11.85 67.61 0.80 1.46 16 14 O 0.09 3.09 11.06 76.99 0.85 3.94 16 15 N -0.37 -13.04 11.71 -44.77 -0.52 -13.56 16 16 C 0.09 3.29 7.08 45.16 0.32 3.61 16 17 C -0.11 -3.34 5.90 -11.54 -0.07 -3.41 16 18 C -0.14 -3.33 10.16 30.60 0.31 -3.02 16 19 C -0.16 -4.22 10.23 30.60 0.31 -3.91 16 20 N -0.61 -23.25 1.85 -675.25 -1.25 -24.50 16 21 C -0.23 -10.87 6.62 84.03 0.56 -10.32 16 22 H 0.03 1.49 7.10 -2.91 -0.02 1.47 16 23 C 0.00 -0.07 5.30 84.86 0.45 0.38 16 24 N -0.95 -54.04 13.97 21.65 0.30 -53.74 16 25 Si 0.89 37.26 26.63 68.60 1.83 39.09 16 26 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 27 H -0.32 -15.05 7.11 99.48 0.71 -14.34 16 28 H -0.21 -7.78 3.87 99.48 0.39 -7.40 16 29 C 0.15 5.17 2.70 86.36 0.23 5.41 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.04 1.52 5.97 -2.39 -0.01 1.51 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 1.60 6.33 -2.39 -0.02 1.58 16 39 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 41 H 0.04 1.58 7.44 -2.39 -0.02 1.56 16 42 H 0.41 15.08 6.56 -92.71 -0.61 14.47 16 43 H 0.24 6.78 7.68 -2.91 -0.02 6.76 16 44 H 0.13 4.21 7.29 -2.39 -0.02 4.19 16 45 H 0.10 2.35 7.97 -2.39 -0.02 2.33 16 46 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 48 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 49 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 50 H 0.04 1.47 6.50 -2.39 -0.02 1.45 16 51 H 0.04 1.32 6.36 -2.38 -0.02 1.30 16 Total: -1.00 -63.85 395.22 4.66 -59.19 By element: Atomic # 1 Polarization: 40.75 SS G_CDS: 0.01 Total: 40.76 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 5.44 Total: 2.30 kcal Atomic # 7 Polarization: -115.83 SS G_CDS: -3.40 Total: -119.23 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: 0.79 Total: -22.11 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 1.83 Total: 39.09 kcal Total: -63.85 4.66 -59.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089690801.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.384 kcal (2) G-P(sol) polarization free energy of solvation -63.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds