Wall clock time and date at job start Wed Apr 1 2020 04:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.49827 * 2 1 4 4 C 1.53046 * 109.49867 * 120.06251 * 2 1 3 5 5 C 1.53043 * 109.53717 * 181.31536 * 4 2 1 6 6 C 1.53184 * 109.31514 * 298.63629 * 5 4 2 7 7 H 1.09004 * 109.58766 * 294.70956 * 6 5 4 8 8 C 1.52994 * 109.58795 * 174.42271 * 6 5 4 9 9 N 1.46507 * 109.47282 * 179.90543 * 8 6 5 10 10 C 1.34779 * 119.99656 * 180.02562 * 9 8 6 11 11 O 1.21685 * 120.00509 * 0.02562 * 10 9 8 12 12 C 1.46727 * 119.99509 * 180.02562 * 10 9 8 13 13 O 1.35346 * 126.64427 * 0.02562 * 12 10 9 14 14 C 1.33662 * 107.68178 * 180.02562 * 13 12 10 15 15 N 1.30613 * 109.15866 * 0.02562 * 14 13 12 16 16 C 1.33699 * 108.99366 * 359.72584 * 15 14 13 17 17 C 1.50700 * 126.27435 * 180.30989 * 16 15 14 18 18 C 1.53000 * 117.50014 * 8.89451 * 17 16 15 19 19 C 1.53001 * 117.49767 * 300.23258 * 17 16 15 20 20 N 1.46930 * 108.77546 * 54.63318 * 6 5 4 21 21 C 1.36940 * 120.62795 * 126.41241 * 20 6 5 22 22 H 1.07996 * 120.00018 * 328.33284 * 21 20 6 23 23 C 1.38809 * 119.99812 * 148.32392 * 21 20 6 24 24 N 1.31623 * 120.00132 * 345.37806 * 23 21 20 25 25 Si 1.86801 * 119.99978 * 165.37442 * 23 21 20 26 26 H 1.48503 * 109.47324 * 90.00126 * 25 23 21 27 27 H 1.48505 * 109.47304 * 210.00522 * 25 23 21 28 28 H 1.48500 * 109.46967 * 330.00272 * 25 23 21 29 29 C 1.46921 * 118.74012 * 306.39033 * 20 6 5 30 30 H 1.08996 * 109.46981 * 299.93332 * 1 2 3 31 31 H 1.08995 * 109.47243 * 59.93930 * 1 2 3 32 32 H 1.09002 * 109.47040 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47341 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46941 * 300.06290 * 3 2 1 35 35 H 1.08997 * 109.47245 * 60.06425 * 3 2 1 36 36 H 1.09001 * 109.45614 * 61.29974 * 4 2 1 37 37 H 1.09000 * 109.44927 * 301.33306 * 4 2 1 38 38 H 1.09001 * 109.49263 * 178.68610 * 5 4 2 39 39 H 1.08995 * 109.51922 * 58.60681 * 5 4 2 40 40 H 1.09000 * 109.47530 * 59.90662 * 8 6 5 41 41 H 1.08998 * 109.47232 * 299.90838 * 8 6 5 42 42 H 0.96997 * 119.99575 * 359.97438 * 9 8 6 43 43 H 1.08004 * 125.42287 * 179.97438 * 14 13 12 44 44 H 1.09000 * 115.54797 * 154.56883 * 17 16 15 45 45 H 1.09003 * 117.49645 * 359.97438 * 18 17 16 46 46 H 1.08999 * 117.49639 * 145.01878 * 18 17 16 47 47 H 1.08996 * 117.49760 * 214.97478 * 19 17 16 48 48 H 1.08994 * 117.50224 * 0.02562 * 19 17 16 49 49 H 0.97002 * 119.99879 * 179.97438 * 24 23 21 50 50 H 1.08994 * 109.59089 * 293.82099 * 29 20 6 51 51 H 1.09002 * 109.70092 * 173.46231 * 29 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4422 0.0000 4 6 2.0408 -0.7227 1.2486 5 6 3.5709 -0.6946 1.2662 6 6 4.1053 -1.4266 0.0313 7 1 3.8397 -2.4823 0.0887 8 6 5.6272 -1.2833 -0.0313 9 7 6.1359 -1.9861 -1.2119 10 6 7.4581 -1.9959 -1.4726 11 8 8.2296 -1.4214 -0.7273 12 6 7.9674 -2.6992 -2.6553 13 8 7.2352 -3.3775 -3.5694 14 6 8.0790 -3.8676 -4.4829 15 7 9.2986 -3.5204 -4.1697 16 6 9.2695 -2.7923 -3.0487 17 6 10.4583 -2.1875 -2.3473 18 6 11.8064 -2.2400 -3.0690 19 6 11.5504 -3.1410 -1.8582 20 7 3.5046 -0.8295 -1.1693 21 6 4.2936 -0.3799 -2.1943 22 1 5.2750 0.0193 -1.9852 23 6 3.8319 -0.4376 -3.5021 24 7 2.7806 -1.1725 -3.7972 25 14 4.7026 0.5280 -4.8434 26 1 5.7689 -0.3122 -5.4455 27 1 3.7237 0.9120 -5.8920 28 1 5.3076 1.7518 -4.2590 29 6 2.0413 -0.7242 -1.2493 30 1 -0.3633 0.5128 0.8906 31 1 -0.3633 0.5147 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1306 1.4418 -0.0005 34 1 1.6766 1.9565 -0.8895 35 1 1.6785 1.9559 0.8905 36 1 1.6968 -1.7569 1.2358 37 1 1.6581 -0.2236 2.1389 38 1 3.9334 -1.1891 2.1674 39 1 3.9163 0.3391 1.2543 40 1 6.0700 -1.7142 0.8667 41 1 5.8905 -0.2276 -0.0955 42 1 5.5210 -2.4450 -1.8054 43 1 7.7973 -4.4575 -5.3426 44 1 10.2475 -1.3087 -1.7379 45 1 11.8335 -2.7124 -4.0509 46 1 12.4827 -1.3959 -2.9340 47 1 12.0584 -2.8892 -0.9273 48 1 11.4092 -4.2057 -2.0441 49 1 2.4578 -1.2125 -4.7110 50 1 1.6053 -1.7220 -1.2975 51 1 1.7616 -0.1599 -2.1390 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089693484.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:17 Heat of formation + Delta-G solvation = 28.221926 kcal Electronic energy + Delta-G solvation = -32432.465769 eV Core-core repulsion = 28334.842783 eV Total energy + Delta-G solvation = -4097.622985 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.24329 -39.32688 -38.40466 -37.31378 -35.17630 -34.24910 -33.24666 -32.23060 -30.33955 -30.04400 -27.56915 -26.63517 -25.52083 -24.59795 -23.56857 -22.92984 -22.31621 -22.20543 -20.54109 -20.22343 -19.94774 -17.94669 -17.90758 -16.73306 -16.56186 -16.19996 -15.60745 -15.45673 -15.21485 -14.51567 -14.33651 -14.13092 -13.96177 -13.72752 -13.53511 -13.42498 -13.29935 -12.97877 -12.48270 -12.22348 -11.92271 -11.75414 -11.71248 -11.44608 -11.43738 -11.32611 -11.18509 -10.90611 -10.83450 -10.75773 -10.66410 -10.48615 -10.45130 -10.33616 -10.15699 -10.11173 -9.83457 -9.69811 -9.47051 -9.29665 -8.78640 -8.57990 -8.28610 -6.67938 -5.88996 -3.34949 1.06534 2.53022 2.73257 3.28521 3.37148 3.41401 3.43571 3.72524 3.99252 4.13786 4.39355 4.58364 4.96503 5.08464 5.14273 5.21812 5.25879 5.42051 5.44009 5.46735 5.57313 5.66964 5.67173 5.71381 5.78688 5.83678 5.87361 5.98069 6.05224 6.12984 6.18549 6.19850 6.27129 6.29164 6.32620 6.35771 6.41015 6.44399 6.45176 6.48452 6.62223 6.87286 6.87672 6.93626 7.04385 7.09365 7.34154 7.61095 7.65303 7.74845 8.07617 8.36122 8.58359 9.11798 9.73255 10.31753 11.17599 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013710 B = 0.003671 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.825579 B = 7624.546704 C = 8743.910850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.095 4.095 3 C -0.124 4.124 4 C -0.095 4.095 5 C -0.130 4.130 6 C 0.160 3.840 7 H 0.032 0.968 8 C 0.134 3.866 9 N -0.676 5.676 10 C 0.598 3.402 11 O -0.536 6.536 12 C -0.087 4.087 13 O -0.178 6.178 14 C 0.192 3.808 15 N -0.494 5.494 16 C 0.091 3.909 17 C -0.082 4.082 18 C -0.165 4.165 19 C -0.160 4.160 20 N -0.584 5.584 21 C -0.253 4.253 22 H 0.067 0.933 23 C 0.015 3.985 24 N -0.895 5.895 25 Si 0.888 3.112 26 H -0.288 1.288 27 H -0.289 1.289 28 H -0.279 1.279 29 C 0.189 3.811 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.031 0.969 36 H 0.052 0.948 37 H 0.045 0.955 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.420 0.580 43 H 0.253 0.747 44 H 0.139 0.861 45 H 0.102 0.898 46 H 0.097 0.903 47 H 0.099 0.901 48 H 0.093 0.907 49 H 0.254 0.746 50 H 0.017 0.983 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.592 -3.839 4.524 8.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.097 4.097 3 C -0.182 4.182 4 C -0.133 4.133 5 C -0.169 4.169 6 C 0.053 3.947 7 H 0.049 0.951 8 C 0.010 3.990 9 N -0.325 5.325 10 C 0.382 3.618 11 O -0.417 6.417 12 C -0.143 4.143 13 O -0.062 6.062 14 C -0.033 4.033 15 N -0.224 5.224 16 C -0.032 4.032 17 C -0.101 4.101 18 C -0.203 4.203 19 C -0.198 4.198 20 N -0.308 5.308 21 C -0.382 4.382 22 H 0.085 0.915 23 C -0.185 4.185 24 N -0.538 5.538 25 Si 0.717 3.283 26 H -0.215 1.215 27 H -0.215 1.215 28 H -0.204 1.204 29 C 0.063 3.937 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.259 0.741 43 H 0.268 0.732 44 H 0.156 0.844 45 H 0.120 0.880 46 H 0.115 0.885 47 H 0.118 0.882 48 H 0.111 0.889 49 H 0.064 0.936 50 H 0.036 0.964 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.451 -3.640 4.528 8.682 hybrid contribution -0.742 0.371 -1.073 1.356 sum 5.709 -3.269 3.455 7.431 Atomic orbital electron populations 1.21758 0.96019 1.00838 1.00529 1.21244 0.93861 0.96414 0.98159 1.21701 1.02137 0.95073 0.99246 1.21408 0.95271 0.99646 0.96994 1.21999 0.96128 1.01304 0.97492 1.20734 0.89868 0.95306 0.88804 0.95067 1.21402 0.94167 0.97404 0.86037 1.45961 1.06102 1.52535 1.27948 1.16316 0.83268 0.80175 0.82050 1.90787 1.57023 1.46170 1.47731 1.23072 0.90956 1.04787 0.95450 1.84604 1.39042 1.52169 1.30390 1.28185 0.82541 0.97881 0.94705 1.70174 1.23103 1.15033 1.14056 1.20910 0.92948 0.97154 0.92223 1.20486 0.85310 1.01852 1.02449 1.22983 0.97461 1.02319 0.97493 1.22932 1.01202 0.97098 0.98549 1.44015 1.01740 1.69442 1.15589 1.19088 1.00005 1.34316 0.84807 0.91540 1.25023 0.98131 0.98256 0.97113 1.70004 1.26000 1.39236 1.18547 0.86529 0.78950 0.80512 0.82265 1.21466 1.21488 1.20444 1.20770 0.82594 0.96491 0.93819 0.93948 0.93053 0.93336 0.91574 0.93657 0.95033 0.92924 0.93593 0.93070 0.91553 0.92206 0.91088 0.74130 0.73180 0.84362 0.87956 0.88497 0.88238 0.88893 0.93614 0.96447 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 8.48 37.16 0.32 -1.74 16 2 C -0.10 -1.65 0.77 -154.39 -0.12 -1.77 16 3 C -0.12 -2.16 7.99 37.16 0.30 -1.86 16 4 C -0.10 -1.50 4.71 -26.69 -0.13 -1.62 16 5 C -0.13 -2.05 5.03 -26.61 -0.13 -2.19 16 6 C 0.16 2.93 3.00 -67.60 -0.20 2.73 16 7 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 8 C 0.13 2.40 4.43 -4.04 -0.02 2.39 16 9 N -0.68 -12.92 3.87 -61.60 -0.24 -13.15 16 10 C 0.60 11.56 7.79 -12.83 -0.10 11.46 16 11 O -0.54 -10.92 14.87 5.20 0.08 -10.84 16 12 C -0.09 -1.59 7.18 -36.84 -0.26 -1.85 16 13 O -0.18 -3.05 10.57 4.42 0.05 -3.00 16 14 C 0.19 2.66 13.21 52.24 0.69 3.35 16 15 N -0.49 -7.74 10.89 -10.88 -0.12 -7.86 16 16 C 0.09 1.55 6.67 -82.46 -0.55 1.00 16 17 C -0.08 -1.24 5.60 -91.77 -0.51 -1.76 16 18 C -0.17 -2.04 10.16 -26.69 -0.27 -2.31 16 19 C -0.16 -1.97 10.24 -26.69 -0.27 -2.25 16 20 N -0.58 -12.62 2.41 -164.78 -0.40 -13.02 16 21 C -0.25 -6.08 6.98 -15.06 -0.11 -6.18 16 22 H 0.07 1.66 5.90 -52.49 -0.31 1.36 16 23 C 0.01 0.37 4.95 -17.43 -0.09 0.29 16 24 N -0.89 -23.65 11.32 55.49 0.63 -23.03 16 25 Si 0.89 21.07 29.58 -169.99 -5.03 16.04 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 C 0.19 4.04 3.94 -3.71 -0.01 4.03 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.25 5.97 -51.93 -0.31 0.94 16 34 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.09 6.34 -51.93 -0.33 0.76 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.07 1.38 7.38 -51.93 -0.38 1.00 16 42 H 0.42 8.58 7.24 -40.82 -0.30 8.29 16 43 H 0.25 2.07 8.06 -52.48 -0.42 1.65 16 44 H 0.14 2.24 6.65 -51.93 -0.35 1.89 16 45 H 0.10 1.30 7.92 -51.93 -0.41 0.89 16 46 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 48 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 50 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.08 2.04 6.27 -51.93 -0.33 1.72 16 LS Contribution 399.96 15.07 6.03 6.03 Total: -1.00 -28.18 399.96 -8.66 -36.84 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -8.19 Total: 10.27 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -1.48 Total: 1.72 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: -0.13 Total: -57.06 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.12 Total: -13.84 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -28.18 -8.66 -36.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089693484.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.064 kcal (2) G-P(sol) polarization free energy of solvation -28.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds