Wall clock time and date at job start Wed Apr 1 2020 04:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.49827 * 2 1 4 4 C 1.53046 * 109.49867 * 120.06251 * 2 1 3 5 5 C 1.53043 * 109.53717 * 181.31536 * 4 2 1 6 6 C 1.53184 * 109.31514 * 298.63629 * 5 4 2 7 7 H 1.09004 * 109.58766 * 294.70956 * 6 5 4 8 8 C 1.52994 * 109.58795 * 174.42271 * 6 5 4 9 9 N 1.46507 * 109.47282 * 179.90543 * 8 6 5 10 10 C 1.34779 * 119.99656 * 180.02562 * 9 8 6 11 11 O 1.21685 * 120.00509 * 0.02562 * 10 9 8 12 12 C 1.46727 * 119.99509 * 180.02562 * 10 9 8 13 13 O 1.35346 * 126.64427 * 0.02562 * 12 10 9 14 14 C 1.33662 * 107.68178 * 180.02562 * 13 12 10 15 15 N 1.30613 * 109.15866 * 0.02562 * 14 13 12 16 16 C 1.33699 * 108.99366 * 359.72584 * 15 14 13 17 17 C 1.50700 * 126.27435 * 180.30989 * 16 15 14 18 18 C 1.53000 * 117.50014 * 8.89451 * 17 16 15 19 19 C 1.53001 * 117.49767 * 300.23258 * 17 16 15 20 20 N 1.46930 * 108.77546 * 54.63318 * 6 5 4 21 21 C 1.36940 * 120.62795 * 126.41241 * 20 6 5 22 22 H 1.07996 * 120.00018 * 328.33284 * 21 20 6 23 23 C 1.38809 * 119.99812 * 148.32392 * 21 20 6 24 24 N 1.31623 * 120.00132 * 345.37806 * 23 21 20 25 25 Si 1.86801 * 119.99978 * 165.37442 * 23 21 20 26 26 H 1.48503 * 109.47324 * 90.00126 * 25 23 21 27 27 H 1.48505 * 109.47304 * 210.00522 * 25 23 21 28 28 H 1.48500 * 109.46967 * 330.00272 * 25 23 21 29 29 C 1.46921 * 118.74012 * 306.39033 * 20 6 5 30 30 H 1.08996 * 109.46981 * 299.93332 * 1 2 3 31 31 H 1.08995 * 109.47243 * 59.93930 * 1 2 3 32 32 H 1.09002 * 109.47040 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47341 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46941 * 300.06290 * 3 2 1 35 35 H 1.08997 * 109.47245 * 60.06425 * 3 2 1 36 36 H 1.09001 * 109.45614 * 61.29974 * 4 2 1 37 37 H 1.09000 * 109.44927 * 301.33306 * 4 2 1 38 38 H 1.09001 * 109.49263 * 178.68610 * 5 4 2 39 39 H 1.08995 * 109.51922 * 58.60681 * 5 4 2 40 40 H 1.09000 * 109.47530 * 59.90662 * 8 6 5 41 41 H 1.08998 * 109.47232 * 299.90838 * 8 6 5 42 42 H 0.96997 * 119.99575 * 359.97438 * 9 8 6 43 43 H 1.08004 * 125.42287 * 179.97438 * 14 13 12 44 44 H 1.09000 * 115.54797 * 154.56883 * 17 16 15 45 45 H 1.09003 * 117.49645 * 359.97438 * 18 17 16 46 46 H 1.08999 * 117.49639 * 145.01878 * 18 17 16 47 47 H 1.08996 * 117.49760 * 214.97478 * 19 17 16 48 48 H 1.08994 * 117.50224 * 0.02562 * 19 17 16 49 49 H 0.97002 * 119.99879 * 179.97438 * 24 23 21 50 50 H 1.08994 * 109.59089 * 293.82099 * 29 20 6 51 51 H 1.09002 * 109.70092 * 173.46231 * 29 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4422 0.0000 4 6 2.0408 -0.7227 1.2486 5 6 3.5709 -0.6946 1.2662 6 6 4.1053 -1.4266 0.0313 7 1 3.8397 -2.4823 0.0887 8 6 5.6272 -1.2833 -0.0313 9 7 6.1359 -1.9861 -1.2119 10 6 7.4581 -1.9959 -1.4726 11 8 8.2296 -1.4214 -0.7273 12 6 7.9674 -2.6992 -2.6553 13 8 7.2352 -3.3775 -3.5694 14 6 8.0790 -3.8676 -4.4829 15 7 9.2986 -3.5204 -4.1697 16 6 9.2695 -2.7923 -3.0487 17 6 10.4583 -2.1875 -2.3473 18 6 11.8064 -2.2400 -3.0690 19 6 11.5504 -3.1410 -1.8582 20 7 3.5046 -0.8295 -1.1693 21 6 4.2936 -0.3799 -2.1943 22 1 5.2750 0.0193 -1.9852 23 6 3.8319 -0.4376 -3.5021 24 7 2.7806 -1.1725 -3.7972 25 14 4.7026 0.5280 -4.8434 26 1 5.7689 -0.3122 -5.4455 27 1 3.7237 0.9120 -5.8920 28 1 5.3076 1.7518 -4.2590 29 6 2.0413 -0.7242 -1.2493 30 1 -0.3633 0.5128 0.8906 31 1 -0.3633 0.5147 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1306 1.4418 -0.0005 34 1 1.6766 1.9565 -0.8895 35 1 1.6785 1.9559 0.8905 36 1 1.6968 -1.7569 1.2358 37 1 1.6581 -0.2236 2.1389 38 1 3.9334 -1.1891 2.1674 39 1 3.9163 0.3391 1.2543 40 1 6.0700 -1.7142 0.8667 41 1 5.8905 -0.2276 -0.0955 42 1 5.5210 -2.4450 -1.8054 43 1 7.7973 -4.4575 -5.3426 44 1 10.2475 -1.3087 -1.7379 45 1 11.8335 -2.7124 -4.0509 46 1 12.4827 -1.3959 -2.9340 47 1 12.0584 -2.8892 -0.9273 48 1 11.4092 -4.2057 -2.0441 49 1 2.4578 -1.2125 -4.7110 50 1 1.6053 -1.7220 -1.2975 51 1 1.7616 -0.1599 -2.1390 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089693484.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:16 Heat of formation + Delta-G solvation = 11.338204 kcal Electronic energy + Delta-G solvation = -32433.197902 eV Core-core repulsion = 28334.842783 eV Total energy + Delta-G solvation = -4098.355119 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.48939 -40.83754 -39.88999 -38.42099 -36.66830 -35.47716 -34.99893 -33.72883 -31.76732 -31.61137 -28.96189 -28.00815 -27.32639 -25.93754 -24.77407 -24.38751 -23.74612 -23.24545 -21.82478 -21.76352 -21.30342 -19.49005 -19.31175 -18.13616 -17.90518 -17.62715 -17.22597 -16.96189 -16.32313 -16.11090 -15.70455 -15.60381 -15.38218 -15.29621 -15.02802 -14.74011 -14.62394 -14.55255 -13.94616 -13.79513 -13.17334 -13.05766 -13.02827 -12.92290 -12.85593 -12.75538 -12.52598 -12.50197 -12.41583 -12.26259 -12.13683 -12.00368 -11.89067 -11.73456 -11.53805 -11.46324 -11.25703 -11.07770 -10.92309 -10.85058 -10.51371 -10.14177 -9.72144 -8.51489 -7.83225 -5.28347 -0.23339 1.32800 1.34952 1.40265 1.45495 1.49794 1.99697 2.32469 2.47116 2.91750 3.05255 3.31927 3.45570 3.58421 3.78503 3.95503 3.99206 4.04793 4.12442 4.20909 4.30534 4.32392 4.40420 4.46792 4.52125 4.57516 4.68323 4.73293 4.74503 4.87339 4.90492 4.93245 4.95947 5.06325 5.10572 5.13523 5.15149 5.16944 5.21389 5.26051 5.26943 5.40066 5.42883 5.52313 5.57049 5.63234 5.71201 5.82362 5.89143 6.35271 6.45372 6.59501 7.05880 7.21135 7.90228 8.43611 9.20599 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013710 B = 0.003671 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.825579 B = 7624.546704 C = 8743.910850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.092 4.092 3 C -0.118 4.118 4 C -0.091 4.091 5 C -0.123 4.123 6 C 0.159 3.841 7 H 0.030 0.970 8 C 0.138 3.862 9 N -0.681 5.681 10 C 0.597 3.403 11 O -0.554 6.554 12 C -0.130 4.130 13 O -0.196 6.196 14 C 0.214 3.786 15 N -0.510 5.510 16 C 0.100 3.900 17 C -0.117 4.117 18 C -0.148 4.148 19 C -0.144 4.144 20 N -0.594 5.594 21 C -0.229 4.229 22 H 0.057 0.943 23 C -0.025 4.025 24 N -0.919 5.919 25 Si 0.926 3.074 26 H -0.293 1.293 27 H -0.293 1.293 28 H -0.285 1.285 29 C 0.198 3.802 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.028 0.972 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.412 0.588 43 H 0.303 0.697 44 H 0.122 0.878 45 H 0.099 0.901 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.092 0.908 49 H 0.247 0.753 50 H -0.006 1.006 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.287 -4.265 5.989 9.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.094 4.094 3 C -0.175 4.175 4 C -0.129 4.129 5 C -0.162 4.162 6 C 0.053 3.947 7 H 0.047 0.953 8 C 0.015 3.985 9 N -0.329 5.329 10 C 0.383 3.617 11 O -0.436 6.436 12 C -0.185 4.185 13 O -0.082 6.082 14 C -0.011 4.011 15 N -0.239 5.239 16 C -0.023 4.023 17 C -0.136 4.136 18 C -0.185 4.185 19 C -0.181 4.181 20 N -0.318 5.318 21 C -0.359 4.359 22 H 0.074 0.926 23 C -0.222 4.222 24 N -0.565 5.565 25 Si 0.757 3.243 26 H -0.220 1.220 27 H -0.219 1.219 28 H -0.211 1.211 29 C 0.072 3.928 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.072 0.928 42 H 0.249 0.751 43 H 0.318 0.682 44 H 0.140 0.860 45 H 0.118 0.882 46 H 0.136 0.864 47 H 0.137 0.863 48 H 0.111 0.889 49 H 0.056 0.944 50 H 0.012 0.988 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.161 -4.056 6.024 10.199 hybrid contribution -0.879 0.449 -1.558 1.845 sum 6.282 -3.607 4.466 8.510 Atomic orbital electron populations 1.21708 0.94267 1.01306 1.01364 1.21151 0.95293 0.96012 0.96898 1.21623 1.00845 0.95164 0.99847 1.21392 0.94894 0.99759 0.96841 1.21942 0.96382 1.00932 0.96991 1.20890 0.89935 0.95275 0.88554 0.95288 1.21414 0.94062 0.96456 0.86592 1.45979 1.06057 1.52667 1.28151 1.16466 0.83048 0.79880 0.82347 1.90755 1.57259 1.47003 1.48578 1.22884 0.91648 1.07467 0.96492 1.84590 1.39861 1.52707 1.31008 1.29473 0.81701 0.95648 0.94256 1.70233 1.23963 1.15854 1.13868 1.21276 0.93030 0.95922 0.92076 1.20529 0.86079 1.02654 1.04304 1.23064 0.95349 1.02788 0.97297 1.23023 0.98903 0.96663 0.99495 1.44161 1.01838 1.69770 1.16054 1.19051 0.99348 1.32259 0.85282 0.92589 1.25360 0.98965 0.99576 0.98307 1.70096 1.27266 1.40989 1.18106 0.85926 0.77937 0.79420 0.81034 1.22015 1.21902 1.21072 1.20550 0.82477 0.95089 0.94659 0.91258 0.94052 0.93100 0.93431 0.95302 0.92124 0.92808 0.90717 0.90041 0.91926 0.90081 0.92816 0.75060 0.68219 0.86007 0.88238 0.86380 0.86303 0.88910 0.94359 0.98806 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 8.48 71.98 0.61 -3.11 16 2 C -0.09 -3.08 0.77 -52.10 -0.04 -3.12 16 3 C -0.12 -3.93 7.99 71.98 0.57 -3.36 16 4 C -0.09 -2.60 4.71 30.62 0.14 -2.45 16 5 C -0.12 -3.61 5.03 30.67 0.15 -3.45 16 6 C 0.16 5.77 3.00 44.97 0.14 5.90 16 7 H 0.03 1.09 8.14 -2.38 -0.02 1.08 16 8 C 0.14 4.97 4.43 86.38 0.38 5.35 16 9 N -0.68 -26.65 3.87 -467.03 -1.81 -28.46 16 10 C 0.60 23.74 7.79 86.46 0.67 24.41 16 11 O -0.55 -23.08 14.87 -4.30 -0.06 -23.15 16 12 C -0.13 -4.84 7.18 24.05 0.17 -4.67 16 13 O -0.20 -6.75 10.57 -7.08 -0.07 -6.83 16 14 C 0.21 5.60 13.21 130.42 1.72 7.32 16 15 N -0.51 -15.40 10.89 -303.13 -3.30 -18.70 16 16 C 0.10 3.40 6.67 41.83 0.28 3.68 16 17 C -0.12 -3.48 5.60 -11.54 -0.06 -3.55 16 18 C -0.15 -3.38 10.16 30.62 0.31 -3.07 16 19 C -0.14 -3.29 10.24 30.62 0.31 -2.98 16 20 N -0.59 -26.11 2.41 -675.26 -1.63 -27.74 16 21 C -0.23 -11.31 6.98 84.03 0.59 -10.72 16 22 H 0.06 2.90 5.90 -2.91 -0.02 2.88 16 23 C -0.03 -1.32 4.95 84.86 0.42 -0.90 16 24 N -0.92 -50.39 11.32 21.65 0.25 -50.15 16 25 Si 0.93 44.56 29.58 68.60 2.03 46.59 16 26 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 27 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 28 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 29 C 0.20 8.64 3.94 86.36 0.34 8.98 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 1.76 5.97 -2.39 -0.01 1.74 16 34 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.06 1.92 6.34 -2.39 -0.02 1.90 16 40 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.05 2.12 7.38 -2.39 -0.02 2.10 16 42 H 0.41 17.44 7.24 -92.71 -0.67 16.77 16 43 H 0.30 4.00 8.06 -2.91 -0.02 3.98 16 44 H 0.12 4.02 6.65 -2.39 -0.02 4.01 16 45 H 0.10 2.35 7.92 -2.39 -0.02 2.33 16 46 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 48 H 0.09 2.13 8.14 -2.39 -0.02 2.12 16 49 H 0.25 13.45 8.31 -92.71 -0.77 12.68 16 50 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 51 H 0.05 2.34 6.27 -2.39 -0.01 2.33 16 Total: -1.00 -63.90 399.96 2.38 -61.52 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: 0.27 Total: 32.66 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 6.71 Total: 14.25 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -6.49 Total: -125.05 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.14 Total: -29.97 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -63.90 2.38 -61.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089693484.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.857 kcal (2) G-P(sol) polarization free energy of solvation -63.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds