Wall clock time and date at job start Wed Apr 1 2020 04:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38353 * 119.40526 * 2 1 4 4 C 1.38341 * 119.45857 * 180.02562 * 3 2 1 5 5 C 1.39989 * 118.34535 * 359.97438 * 4 3 2 6 6 C 1.47524 * 120.59619 * 180.02562 * 5 4 3 7 7 O 1.21590 * 120.00255 * 180.02562 * 6 5 4 8 8 N 1.34783 * 119.99680 * 359.97438 * 6 5 4 9 9 C 1.46498 * 119.99694 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47119 * 180.02562 * 9 8 6 11 11 H 1.09008 * 109.70146 * 60.38301 * 10 9 8 12 12 C 1.53193 * 109.58730 * 180.73723 * 10 9 8 13 13 C 1.53049 * 109.31231 * 174.42480 * 12 10 9 14 14 C 1.53045 * 109.53232 * 298.63559 * 13 12 10 15 15 C 1.53002 * 109.49131 * 181.31958 * 14 13 12 16 16 C 1.53004 * 109.49510 * 301.37851 * 14 13 12 17 17 C 1.52750 * 109.38570 * 61.24096 * 14 13 12 18 18 N 1.46926 * 109.01083 * 305.58448 * 17 14 13 19 19 C 1.36935 * 120.63221 * 233.58447 * 18 17 14 20 20 H 1.08003 * 119.99787 * 146.98231 * 19 18 17 21 21 C 1.38804 * 120.00042 * 326.98075 * 19 18 17 22 22 N 1.31623 * 120.00139 * 337.98384 * 21 19 18 23 23 Si 1.86805 * 120.00121 * 157.70803 * 21 19 18 24 24 H 1.48493 * 109.47346 * 180.27390 * 23 21 19 25 25 H 1.48498 * 109.46962 * 300.27738 * 23 21 19 26 26 H 1.48504 * 109.46961 * 60.27677 * 23 21 19 27 27 C 1.40280 * 118.80957 * 0.27545 * 5 4 3 28 28 O 1.35425 * 119.80096 * 179.72878 * 27 5 4 29 29 N 1.31879 * 119.40633 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47221 * 90.00309 * 1 2 3 31 31 H 1.09003 * 109.47086 * 209.99991 * 1 2 3 32 32 H 1.09001 * 109.46966 * 329.99578 * 1 2 3 33 33 H 1.08005 * 120.27478 * 0.02562 * 3 2 1 34 34 H 1.07993 * 120.82846 * 180.02562 * 4 3 2 35 35 H 0.96992 * 120.00104 * 0.02562 * 8 6 5 36 36 H 1.09000 * 109.47458 * 59.99975 * 9 8 6 37 37 H 1.09004 * 109.47024 * 300.00087 * 9 8 6 38 38 H 1.08997 * 109.49865 * 294.37303 * 12 10 9 39 39 H 1.08997 * 109.49884 * 54.43787 * 12 10 9 40 40 H 1.08997 * 109.46177 * 58.65422 * 13 12 10 41 41 H 1.09000 * 109.45693 * 178.62879 * 13 12 10 42 42 H 1.08998 * 109.47505 * 59.99875 * 15 14 13 43 43 H 1.09004 * 109.46783 * 179.97438 * 15 14 13 44 44 H 1.08996 * 109.47130 * 299.99480 * 15 14 13 45 45 H 1.08996 * 109.47061 * 60.00607 * 16 14 13 46 46 H 1.09006 * 109.46604 * 180.02562 * 16 14 13 47 47 H 1.08997 * 109.47243 * 300.00470 * 16 14 13 48 48 H 1.09002 * 109.51123 * 185.69893 * 17 14 13 49 49 H 1.09001 * 109.43288 * 65.42177 * 17 14 13 50 50 H 0.96995 * 120.00188 * 354.18202 * 22 21 19 51 51 H 0.96694 * 113.99905 * 89.99798 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2066 -0.0005 5 6 4.2356 -0.0248 -0.0005 6 6 5.7097 -0.0814 -0.0005 7 8 6.2769 -1.1569 -0.0010 8 7 6.4278 1.0592 -0.0010 9 6 7.8917 1.0030 -0.0016 10 6 8.4566 2.4249 -0.0015 11 1 8.1213 2.9534 0.8909 12 6 9.9874 2.3693 -0.0207 13 6 10.5437 3.7882 -0.1608 14 6 10.0659 4.3971 -1.4811 15 6 10.6492 5.8031 -1.6356 16 6 10.5310 3.5204 -2.6456 17 6 8.5403 4.4733 -1.4815 18 7 7.9943 3.1386 -1.1996 19 6 7.0764 2.5684 -2.0407 20 1 7.0648 1.4977 -2.1813 21 6 6.1607 3.3666 -2.7124 22 7 5.8684 4.5641 -2.2510 23 14 5.3490 2.7442 -4.2755 24 1 4.4237 3.7808 -4.7994 25 1 6.3914 2.4519 -5.2920 26 1 4.5866 1.5051 -3.9778 27 6 3.4758 -1.2041 -0.0059 28 8 4.0992 -2.4063 -0.0115 29 7 2.1546 -1.1489 0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6411 2.1376 0.0004 34 1 4.1223 2.1344 -0.0001 35 1 5.9754 1.9171 -0.0011 36 1 8.2348 0.4754 -0.8916 37 1 8.2354 0.4758 0.8884 38 1 10.3471 1.9277 0.9087 39 1 10.3190 1.7631 -0.8637 40 1 10.1916 4.4000 0.6697 41 1 11.6331 3.7537 -0.1502 42 1 11.7377 5.7470 -1.6345 43 1 10.3090 6.2362 -2.5762 44 1 10.3167 6.4275 -0.8064 45 1 10.1143 2.5193 -2.5357 46 1 10.1907 3.9547 -3.5857 47 1 11.6194 3.4630 -2.6451 48 1 8.1929 4.8115 -2.4577 49 1 8.2119 5.1723 -0.7123 50 1 6.2270 4.8562 -1.3984 51 1 4.2804 -2.7595 0.8702 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089703704.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:55 Heat of formation + Delta-G solvation = -29.783581 kcal Electronic energy + Delta-G solvation = -32516.385937 eV Core-core repulsion = 28416.247644 eV Total energy + Delta-G solvation = -4100.138293 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.63954 -39.21607 -38.30037 -37.02901 -35.15003 -33.53868 -33.15374 -31.96417 -31.50886 -29.88470 -28.31293 -27.08289 -26.74885 -25.49378 -23.92146 -22.98153 -22.62031 -22.19645 -20.30773 -20.03483 -18.49678 -17.98420 -17.70805 -16.77426 -16.62683 -15.70276 -15.42601 -15.03244 -14.51833 -14.45733 -14.24667 -14.03175 -13.84566 -13.73739 -13.63128 -13.44995 -13.22044 -12.90257 -12.64645 -12.36880 -12.24453 -12.14094 -12.04347 -11.92353 -11.53048 -11.46516 -11.44862 -11.31000 -10.83588 -10.82405 -10.72777 -10.33636 -10.14825 -10.02529 -9.94061 -9.79417 -9.76963 -9.65859 -9.24806 -9.07977 -8.73959 -8.54126 -8.22930 -6.92994 -6.11891 -3.39391 0.74820 1.24008 3.17541 3.43004 3.47149 3.58600 3.62225 3.72272 4.03748 4.46344 4.59442 4.80131 4.97755 5.00179 5.10869 5.20369 5.31503 5.34694 5.41253 5.45190 5.48896 5.50073 5.59773 5.61990 5.74582 5.87617 5.88506 5.98129 6.05034 6.06424 6.10328 6.14406 6.19431 6.24228 6.32170 6.34313 6.35676 6.40392 6.51457 6.53409 6.70236 6.78620 6.82964 6.89638 7.08482 7.12647 7.17133 7.65983 7.93364 8.00535 8.17654 8.49421 8.78726 8.98508 9.71749 10.19029 11.11028 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.003767 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.256087 B = 7431.756553 C = 8500.970858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.165 3.835 3 C -0.190 4.190 4 C -0.016 4.016 5 C -0.200 4.200 6 C 0.555 3.445 7 O -0.545 6.545 8 N -0.685 5.685 9 C 0.139 3.861 10 C 0.162 3.838 11 H 0.029 0.971 12 C -0.130 4.130 13 C -0.096 4.096 14 C -0.089 4.089 15 C -0.135 4.135 16 C -0.125 4.125 17 C 0.168 3.832 18 N -0.592 5.592 19 C -0.343 4.343 20 H 0.059 0.941 21 C -0.013 4.013 22 N -0.913 5.913 23 Si 1.048 2.952 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.366 3.634 28 O -0.459 6.459 29 N -0.514 5.514 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.411 0.589 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.044 0.956 43 H 0.051 0.949 44 H 0.048 0.952 45 H 0.067 0.933 46 H 0.046 0.954 47 H 0.033 0.967 48 H 0.075 0.925 49 H 0.015 0.985 50 H 0.269 0.731 51 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.956 -1.977 7.532 8.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.026 3.974 3 C -0.209 4.209 4 C -0.042 4.042 5 C -0.206 4.206 6 C 0.340 3.660 7 O -0.425 6.425 8 N -0.336 5.336 9 C 0.015 3.985 10 C 0.055 3.945 11 H 0.047 0.953 12 C -0.170 4.170 13 C -0.133 4.133 14 C -0.091 4.091 15 C -0.193 4.193 16 C -0.183 4.183 17 C 0.042 3.958 18 N -0.316 5.316 19 C -0.472 4.472 20 H 0.077 0.923 21 C -0.217 4.217 22 N -0.552 5.552 23 Si 0.879 3.121 24 H -0.211 1.211 25 H -0.220 1.220 26 H -0.219 1.219 27 C 0.186 3.814 28 O -0.265 6.265 29 N -0.234 5.234 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.161 0.839 34 H 0.167 0.833 35 H 0.249 0.751 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.065 0.935 47 H 0.052 0.948 48 H 0.093 0.907 49 H 0.033 0.967 50 H 0.080 0.920 51 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -3.023 -3.075 5.683 7.134 hybrid contribution 1.491 0.735 1.450 2.206 sum -1.532 -2.340 7.132 7.661 Atomic orbital electron populations 1.20786 0.88418 1.03585 1.03473 1.21192 0.96863 0.87334 0.91963 1.21912 0.94650 0.99469 1.04909 1.21907 0.94570 0.97651 0.90075 1.21207 0.95550 0.94147 1.09710 1.17751 0.85789 0.84651 0.77788 1.90742 1.71798 1.28731 1.51201 1.45863 1.07229 1.08624 1.71900 1.21242 0.79404 0.97126 1.00720 1.20728 0.92048 0.91017 0.90692 0.95333 1.22001 0.97038 0.97131 1.00828 1.21410 0.98676 0.96058 0.97181 1.21045 0.99068 0.94143 0.94822 1.21787 0.99526 0.96744 1.01279 1.21714 0.98225 1.01052 0.97274 1.20886 0.88198 0.86776 0.99938 1.44101 1.47505 1.16855 1.23158 1.19932 1.10251 0.93796 1.23251 0.92320 1.25678 0.95553 0.96590 1.03842 1.70805 1.42578 1.20663 1.21173 0.83734 0.76399 0.75210 0.76795 1.21058 1.21958 1.21938 1.19103 0.86041 0.85071 0.91166 1.84735 1.76495 1.31932 1.33385 1.67073 1.09419 1.30401 1.16531 0.89968 0.90358 0.90273 0.83860 0.83326 0.75082 0.91470 0.92687 0.92994 0.91489 0.92942 0.93352 0.93650 0.92944 0.93305 0.91449 0.93534 0.94802 0.90671 0.96691 0.91980 0.74131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.16 36.01 0.37 -0.63 16 2 C 0.16 2.25 6.78 -82.53 -0.56 1.69 16 3 C -0.19 -2.57 9.71 -39.50 -0.38 -2.95 16 4 C -0.02 -0.25 9.64 -38.89 -0.37 -0.63 16 5 C -0.20 -3.54 5.90 -104.69 -0.62 -4.16 16 6 C 0.55 10.87 7.77 -12.47 -0.10 10.78 16 7 O -0.54 -11.82 15.19 -16.48 -0.25 -12.07 16 8 N -0.69 -12.97 3.82 -61.35 -0.23 -13.21 16 9 C 0.14 2.57 4.43 -4.04 -0.02 2.55 16 10 C 0.16 2.94 3.02 -67.60 -0.20 2.74 16 11 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 12 C -0.13 -2.07 5.03 -26.61 -0.13 -2.21 16 13 C -0.10 -1.47 4.71 -26.68 -0.13 -1.60 16 14 C -0.09 -1.51 0.77 -154.61 -0.12 -1.63 16 15 C -0.14 -2.02 8.48 37.16 0.32 -1.70 16 16 C -0.13 -2.17 7.98 37.16 0.30 -1.88 16 17 C 0.17 3.45 3.35 -3.94 -0.01 3.44 16 18 N -0.59 -12.46 2.22 -165.04 -0.37 -12.83 16 19 C -0.34 -8.16 6.78 -15.06 -0.10 -8.26 16 20 H 0.06 1.51 6.01 -52.48 -0.32 1.19 16 21 C -0.01 -0.33 4.73 -17.43 -0.08 -0.41 16 22 N -0.91 -23.97 12.58 55.49 0.70 -23.27 16 23 Si 1.05 24.31 29.97 -169.99 -5.10 19.22 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 C 0.37 6.37 7.77 -16.61 -0.13 6.24 16 28 O -0.46 -7.74 11.66 -39.74 -0.46 -8.21 16 29 N -0.51 -8.28 10.28 -9.21 -0.09 -8.38 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 33 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 34 H 0.15 2.36 6.51 -52.49 -0.34 2.02 16 35 H 0.41 7.92 5.47 -40.82 -0.22 7.69 16 36 H 0.07 1.39 7.43 -51.93 -0.39 1.00 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.13 6.34 -51.93 -0.33 0.80 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.07 1.29 5.98 -51.93 -0.31 0.98 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.07 1.79 6.61 -51.93 -0.34 1.45 16 49 H 0.02 0.32 7.81 -51.93 -0.41 -0.08 16 50 H 0.27 7.06 6.69 -40.82 -0.27 6.79 16 51 H 0.40 4.85 9.06 45.56 0.41 5.26 16 LS Contribution 395.79 15.07 5.96 5.96 Total: -1.00 -29.63 395.79 -9.05 -38.68 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -7.23 Total: 12.73 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -1.98 Total: 1.36 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.00 Total: -57.69 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.71 Total: -20.27 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -5.10 Total: 19.22 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.63 -9.05 -38.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089703704.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.894 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds