Wall clock time and date at job start Wed Apr 1 2020 04:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38353 * 119.40526 * 2 1 4 4 C 1.38341 * 119.45857 * 180.02562 * 3 2 1 5 5 C 1.39989 * 118.34535 * 359.97438 * 4 3 2 6 6 C 1.47524 * 120.59619 * 180.02562 * 5 4 3 7 7 O 1.21590 * 120.00255 * 180.02562 * 6 5 4 8 8 N 1.34783 * 119.99680 * 359.97438 * 6 5 4 9 9 C 1.46498 * 119.99694 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47119 * 180.02562 * 9 8 6 11 11 H 1.09008 * 109.70146 * 60.38301 * 10 9 8 12 12 C 1.53193 * 109.58730 * 180.73723 * 10 9 8 13 13 C 1.53049 * 109.31231 * 174.42480 * 12 10 9 14 14 C 1.53045 * 109.53232 * 298.63559 * 13 12 10 15 15 C 1.53002 * 109.49131 * 181.31958 * 14 13 12 16 16 C 1.53004 * 109.49510 * 301.37851 * 14 13 12 17 17 C 1.52750 * 109.38570 * 61.24096 * 14 13 12 18 18 N 1.46926 * 109.01083 * 305.58448 * 17 14 13 19 19 C 1.36935 * 120.63221 * 233.58447 * 18 17 14 20 20 H 1.08003 * 119.99787 * 146.98231 * 19 18 17 21 21 C 1.38804 * 120.00042 * 326.98075 * 19 18 17 22 22 N 1.31623 * 120.00139 * 337.98384 * 21 19 18 23 23 Si 1.86805 * 120.00121 * 157.70803 * 21 19 18 24 24 H 1.48493 * 109.47346 * 180.27390 * 23 21 19 25 25 H 1.48498 * 109.46962 * 300.27738 * 23 21 19 26 26 H 1.48504 * 109.46961 * 60.27677 * 23 21 19 27 27 C 1.40280 * 118.80957 * 0.27545 * 5 4 3 28 28 O 1.35425 * 119.80096 * 179.72878 * 27 5 4 29 29 N 1.31879 * 119.40633 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47221 * 90.00309 * 1 2 3 31 31 H 1.09003 * 109.47086 * 209.99991 * 1 2 3 32 32 H 1.09001 * 109.46966 * 329.99578 * 1 2 3 33 33 H 1.08005 * 120.27478 * 0.02562 * 3 2 1 34 34 H 1.07993 * 120.82846 * 180.02562 * 4 3 2 35 35 H 0.96992 * 120.00104 * 0.02562 * 8 6 5 36 36 H 1.09000 * 109.47458 * 59.99975 * 9 8 6 37 37 H 1.09004 * 109.47024 * 300.00087 * 9 8 6 38 38 H 1.08997 * 109.49865 * 294.37303 * 12 10 9 39 39 H 1.08997 * 109.49884 * 54.43787 * 12 10 9 40 40 H 1.08997 * 109.46177 * 58.65422 * 13 12 10 41 41 H 1.09000 * 109.45693 * 178.62879 * 13 12 10 42 42 H 1.08998 * 109.47505 * 59.99875 * 15 14 13 43 43 H 1.09004 * 109.46783 * 179.97438 * 15 14 13 44 44 H 1.08996 * 109.47130 * 299.99480 * 15 14 13 45 45 H 1.08996 * 109.47061 * 60.00607 * 16 14 13 46 46 H 1.09006 * 109.46604 * 180.02562 * 16 14 13 47 47 H 1.08997 * 109.47243 * 300.00470 * 16 14 13 48 48 H 1.09002 * 109.51123 * 185.69893 * 17 14 13 49 49 H 1.09001 * 109.43288 * 65.42177 * 17 14 13 50 50 H 0.96995 * 120.00188 * 354.18202 * 22 21 19 51 51 H 0.96694 * 113.99905 * 89.99798 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2066 -0.0005 5 6 4.2356 -0.0248 -0.0005 6 6 5.7097 -0.0814 -0.0005 7 8 6.2769 -1.1569 -0.0010 8 7 6.4278 1.0592 -0.0010 9 6 7.8917 1.0030 -0.0016 10 6 8.4566 2.4249 -0.0015 11 1 8.1213 2.9534 0.8909 12 6 9.9874 2.3693 -0.0207 13 6 10.5437 3.7882 -0.1608 14 6 10.0659 4.3971 -1.4811 15 6 10.6492 5.8031 -1.6356 16 6 10.5310 3.5204 -2.6456 17 6 8.5403 4.4733 -1.4815 18 7 7.9943 3.1386 -1.1996 19 6 7.0764 2.5684 -2.0407 20 1 7.0648 1.4977 -2.1813 21 6 6.1607 3.3666 -2.7124 22 7 5.8684 4.5641 -2.2510 23 14 5.3490 2.7442 -4.2755 24 1 4.4237 3.7808 -4.7994 25 1 6.3914 2.4519 -5.2920 26 1 4.5866 1.5051 -3.9778 27 6 3.4758 -1.2041 -0.0059 28 8 4.0992 -2.4063 -0.0115 29 7 2.1546 -1.1489 0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6411 2.1376 0.0004 34 1 4.1223 2.1344 -0.0001 35 1 5.9754 1.9171 -0.0011 36 1 8.2348 0.4754 -0.8916 37 1 8.2354 0.4758 0.8884 38 1 10.3471 1.9277 0.9087 39 1 10.3190 1.7631 -0.8637 40 1 10.1916 4.4000 0.6697 41 1 11.6331 3.7537 -0.1502 42 1 11.7377 5.7470 -1.6345 43 1 10.3090 6.2362 -2.5762 44 1 10.3167 6.4275 -0.8064 45 1 10.1143 2.5193 -2.5357 46 1 10.1907 3.9547 -3.5857 47 1 11.6194 3.4630 -2.6451 48 1 8.1929 4.8115 -2.4577 49 1 8.2119 5.1723 -0.7123 50 1 6.2270 4.8562 -1.3984 51 1 4.2804 -2.7595 0.8702 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089703704.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:54 Heat of formation + Delta-G solvation = -48.597320 kcal Electronic energy + Delta-G solvation = -32517.201762 eV Core-core repulsion = 28416.247644 eV Total energy + Delta-G solvation = -4100.954118 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.92051 -40.69305 -39.76835 -38.27997 -36.67817 -35.25798 -34.49014 -33.34341 -32.61917 -31.57142 -29.54169 -28.33511 -28.11387 -27.25027 -25.30554 -24.22938 -24.00573 -23.62535 -21.87715 -21.48162 -19.79586 -19.50254 -19.21192 -18.28282 -17.98413 -17.17155 -16.82042 -16.46622 -16.04973 -15.74494 -15.64793 -15.58480 -15.30200 -15.23698 -14.84678 -14.83150 -14.69244 -14.15914 -13.95269 -13.64815 -13.57448 -13.49153 -13.19886 -13.10639 -12.96616 -12.81687 -12.71669 -12.63607 -12.57630 -12.35204 -12.25336 -12.01791 -11.77247 -11.66048 -11.37171 -11.21754 -11.07079 -11.01935 -10.85179 -10.47289 -10.43311 -10.03279 -9.73842 -8.75099 -8.05092 -5.31469 -0.49035 0.03139 1.52770 1.54805 1.72860 1.80500 2.22416 2.45973 2.59243 2.72126 3.27786 3.48255 3.51478 3.65455 3.74684 3.91012 3.92042 3.93674 4.09396 4.22607 4.26104 4.34981 4.41242 4.42783 4.57875 4.66359 4.67881 4.76655 4.79793 4.83018 4.86968 4.92241 4.97509 5.00526 5.04082 5.06069 5.08223 5.10884 5.15191 5.24698 5.28700 5.42019 5.46122 5.48386 5.55771 5.59865 5.72992 6.05054 6.49473 6.53425 6.64072 6.77948 7.14704 7.24337 7.85253 8.33362 9.13856 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.003767 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.256087 B = 7431.756553 C = 8500.970858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.167 3.833 3 C -0.183 4.183 4 C -0.022 4.022 5 C -0.226 4.226 6 C 0.552 3.448 7 O -0.573 6.573 8 N -0.685 5.685 9 C 0.143 3.857 10 C 0.163 3.837 11 H 0.034 0.966 12 C -0.125 4.125 13 C -0.090 4.090 14 C -0.087 4.087 15 C -0.130 4.130 16 C -0.119 4.119 17 C 0.177 3.823 18 N -0.601 5.601 19 C -0.318 4.318 20 H 0.039 0.961 21 C -0.048 4.048 22 N -0.934 5.934 23 Si 1.078 2.922 24 H -0.287 1.287 25 H -0.294 1.294 26 H -0.295 1.295 27 C 0.357 3.643 28 O -0.475 6.475 29 N -0.527 5.527 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.177 0.823 34 H 0.143 0.857 35 H 0.409 0.591 36 H 0.040 0.960 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.042 0.958 44 H 0.054 0.946 45 H 0.043 0.957 46 H 0.029 0.971 47 H 0.061 0.939 48 H 0.037 0.963 49 H 0.004 0.996 50 H 0.261 0.739 51 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.887 -1.390 8.677 8.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.029 3.971 3 C -0.203 4.203 4 C -0.048 4.048 5 C -0.232 4.232 6 C 0.339 3.661 7 O -0.455 6.455 8 N -0.334 5.334 9 C 0.019 3.981 10 C 0.057 3.943 11 H 0.051 0.949 12 C -0.164 4.164 13 C -0.128 4.128 14 C -0.089 4.089 15 C -0.188 4.188 16 C -0.176 4.176 17 C 0.051 3.949 18 N -0.326 5.326 19 C -0.448 4.448 20 H 0.056 0.944 21 C -0.247 4.247 22 N -0.576 5.576 23 Si 0.908 3.092 24 H -0.213 1.213 25 H -0.221 1.221 26 H -0.222 1.222 27 C 0.177 3.823 28 O -0.284 6.284 29 N -0.248 5.248 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.128 0.872 33 H 0.195 0.805 34 H 0.161 0.839 35 H 0.247 0.753 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.048 0.952 47 H 0.080 0.920 48 H 0.055 0.945 49 H 0.022 0.978 50 H 0.072 0.928 51 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -2.932 -2.490 6.847 7.853 hybrid contribution 1.421 0.509 1.122 1.881 sum -1.511 -1.981 7.969 8.349 Atomic orbital electron populations 1.20953 0.84979 1.05413 1.04654 1.22002 0.98963 0.86595 0.89510 1.22291 0.93647 1.01010 1.03322 1.21958 0.95819 0.96661 0.90387 1.21109 0.94411 0.95296 1.12408 1.18086 0.86782 0.84233 0.76983 1.90706 1.72608 1.29518 1.52658 1.45865 1.07432 1.08428 1.71721 1.21230 0.79282 0.97316 1.00228 1.20858 0.93884 0.90170 0.89372 0.94871 1.21951 0.94711 0.97869 1.01915 1.21390 1.00214 0.95223 0.95959 1.20992 0.96170 0.95793 0.95926 1.21730 1.00915 0.95069 1.01062 1.21638 0.99797 0.99525 0.96651 1.20712 0.90872 0.85953 0.97337 1.44202 1.47259 1.17120 1.24027 1.19755 1.09738 0.92682 1.22674 0.94368 1.26167 0.96482 0.96807 1.05287 1.70856 1.44050 1.21413 1.21270 0.83287 0.75823 0.74571 0.75549 1.21312 1.22072 1.22200 1.19226 0.86667 0.84950 0.91482 1.84671 1.76736 1.32004 1.35014 1.67198 1.08650 1.31680 1.17260 0.88820 0.89805 0.87245 0.80517 0.83922 0.75344 0.94113 0.90905 0.90178 0.92444 0.92365 0.90663 0.91156 0.93915 0.92702 0.93751 0.95196 0.92037 0.94484 0.97781 0.92820 0.72333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.60 10.16 71.24 0.72 -0.88 16 2 C 0.17 4.23 6.78 42.58 0.29 4.52 16 3 C -0.18 -4.63 9.71 22.32 0.22 -4.42 16 4 C -0.02 -0.71 9.64 22.72 0.22 -0.49 16 5 C -0.23 -8.18 5.90 -19.91 -0.12 -8.30 16 6 C 0.55 22.36 7.77 86.69 0.67 23.03 16 7 O -0.57 -25.66 15.19 16.82 0.26 -25.40 16 8 N -0.68 -26.64 3.82 -466.28 -1.78 -28.42 16 9 C 0.14 5.35 4.43 86.38 0.38 5.73 16 10 C 0.16 5.84 3.02 44.97 0.14 5.97 16 11 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 12 C -0.13 -3.72 5.03 30.68 0.15 -3.56 16 13 C -0.09 -2.51 4.71 30.63 0.14 -2.36 16 14 C -0.09 -2.83 0.77 -52.25 -0.04 -2.87 16 15 C -0.13 -3.59 8.48 71.98 0.61 -2.98 16 16 C -0.12 -4.00 7.98 71.98 0.57 -3.42 16 17 C 0.18 7.34 3.35 86.21 0.29 7.63 16 18 N -0.60 -25.68 2.22 -676.07 -1.50 -27.18 16 19 C -0.32 -15.55 6.78 84.03 0.57 -14.98 16 20 H 0.04 2.04 6.01 -2.91 -0.02 2.03 16 21 C -0.05 -2.45 4.73 84.86 0.40 -2.05 16 22 N -0.93 -50.22 12.58 21.65 0.27 -49.94 16 23 Si 1.08 50.40 29.97 68.60 2.06 52.45 16 24 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 25 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 C 0.36 12.53 7.77 85.13 0.66 13.19 16 28 O -0.47 -16.42 11.66 -66.38 -0.77 -17.20 16 29 N -0.53 -16.58 10.28 -296.05 -3.04 -19.62 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 32 H 0.11 1.07 8.07 -2.39 -0.02 1.05 16 33 H 0.18 3.21 8.06 -2.91 -0.02 3.19 16 34 H 0.14 4.63 6.51 -2.91 -0.02 4.61 16 35 H 0.41 16.23 5.47 -92.71 -0.51 15.73 16 36 H 0.04 1.74 7.43 -2.39 -0.02 1.72 16 37 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.06 1.84 6.34 -2.39 -0.02 1.83 16 40 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.04 1.68 5.98 -2.39 -0.01 1.67 16 46 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 47 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.04 1.81 6.61 -2.39 -0.02 1.80 16 49 H 0.00 0.18 7.81 -2.39 -0.02 0.16 16 50 H 0.26 14.08 6.69 -92.71 -0.62 13.46 16 51 H 0.42 10.45 9.06 -74.06 -0.67 9.78 16 Total: -1.00 -66.22 395.79 1.30 -64.91 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: -0.07 Total: 36.63 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 5.89 Total: 13.77 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -6.05 Total: -125.16 kcal Atomic # 8 Polarization: -42.08 SS G_CDS: -0.52 Total: -42.60 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 2.06 Total: 52.45 kcal Total: -66.22 1.30 -64.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089703704.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.317 kcal (2) G-P(sol) polarization free energy of solvation -66.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds