Wall clock time and date at job start Wed Apr 1 2020 04:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35685 * 117.00136 * 2 1 4 4 C 1.38893 * 119.62526 * 180.02562 * 3 2 1 5 5 C 1.39571 * 118.95030 * 180.02562 * 4 3 2 6 6 C 1.48154 * 120.89382 * 180.02562 * 5 4 3 7 7 O 1.21510 * 120.00049 * 179.97438 * 6 5 4 8 8 N 1.34780 * 120.00345 * 0.02562 * 6 5 4 9 9 C 1.46497 * 120.00316 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.46857 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47006 * 179.97438 * 10 9 8 12 12 H 1.09005 * 110.63590 * 51.85907 * 11 10 9 13 13 C 1.54337 * 111.00569 * 288.78250 * 11 10 9 14 14 N 1.47015 * 107.26507 * 219.59972 * 13 11 10 15 15 C 1.36937 * 125.64768 * 178.84634 * 14 13 11 16 16 H 1.07996 * 119.99824 * 340.94235 * 15 14 13 17 17 C 1.38807 * 120.00250 * 161.21713 * 15 14 13 18 18 N 1.31620 * 120.00450 * 157.60272 * 17 15 14 19 19 Si 1.86801 * 119.99892 * 337.60961 * 17 15 14 20 20 H 1.48500 * 109.47209 * 84.53337 * 19 17 15 21 21 H 1.48506 * 109.47109 * 204.53340 * 19 17 15 22 22 H 1.48497 * 109.47176 * 324.53007 * 19 17 15 23 23 C 1.47427 * 108.70568 * 358.58089 * 14 13 11 24 24 C 1.54914 * 104.83009 * 24.35900 * 23 14 13 25 25 H 1.09007 * 111.00378 * 81.06227 * 24 23 14 26 26 C 1.52998 * 111.00145 * 204.87596 * 24 23 14 27 27 C 1.39971 * 118.21369 * 0.27233 * 5 4 3 28 28 C 1.37977 * 119.13360 * 359.48287 * 27 5 4 29 29 C 1.50696 * 119.51344 * 180.22981 * 28 27 5 30 30 N 1.31916 * 120.97917 * 0.53133 * 28 27 5 31 31 H 1.08995 * 109.46852 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46785 * 299.99202 * 1 2 3 33 33 H 1.09002 * 109.47277 * 59.99002 * 1 2 3 34 34 H 1.08000 * 120.52129 * 0.02562 * 4 3 2 35 35 H 0.97004 * 119.99395 * 359.97438 * 8 6 5 36 36 H 1.08994 * 109.46946 * 59.99649 * 9 8 6 37 37 H 1.09002 * 109.46746 * 299.99680 * 9 8 6 38 38 H 1.08994 * 109.47558 * 60.00110 * 10 9 8 39 39 H 1.09002 * 109.47253 * 299.99457 * 10 9 8 40 40 H 1.08994 * 109.98977 * 100.12069 * 13 11 10 41 41 H 1.08996 * 109.77507 * 338.95612 * 13 11 10 42 42 H 0.97000 * 120.00315 * 179.97438 * 18 17 15 43 43 H 1.08999 * 110.36487 * 143.19046 * 23 14 13 44 44 H 1.08995 * 110.37008 * 265.51818 * 23 14 13 45 45 H 1.08995 * 109.47287 * 58.54469 * 26 24 23 46 46 H 1.08999 * 109.47052 * 178.54557 * 26 24 23 47 47 H 1.08997 * 109.46887 * 298.54352 * 26 24 23 48 48 H 1.08002 * 120.43374 * 179.72708 * 27 5 4 49 49 H 1.09005 * 109.47371 * 270.30018 * 29 28 27 50 50 H 1.09003 * 109.46985 * 30.29560 * 29 28 27 51 51 H 1.09000 * 109.47230 * 150.29816 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4325 1.2725 -0.0005 5 6 4.0515 2.5235 0.0000 6 6 5.5283 2.6415 -0.0011 7 8 6.0502 3.7388 -0.0011 8 7 6.2931 1.5316 -0.0032 9 6 7.7534 1.6483 -0.0049 10 6 8.3766 0.2510 -0.0064 11 6 9.9018 0.3728 -0.0088 12 1 10.2358 1.0311 0.7932 13 6 10.4141 0.8799 -1.3735 14 7 11.6431 0.1346 -1.6824 15 6 12.3959 0.2723 -2.8180 16 1 11.9658 0.7248 -3.6993 17 6 13.7098 -0.1747 -2.8383 18 7 14.2911 -0.4580 -3.9847 19 14 14.6531 -0.3746 -1.2384 20 1 14.3498 -1.7027 -0.6474 21 1 16.1102 -0.2734 -1.5069 22 1 14.2495 0.6935 -0.2890 23 6 11.9345 -0.7810 -0.5643 24 6 10.5643 -1.0246 0.1161 25 1 9.9897 -1.7789 -0.4215 26 6 10.7432 -1.4185 1.5837 27 6 3.2395 3.6636 0.0070 28 6 1.8681 3.5116 0.0021 29 6 0.9858 4.7332 0.0042 30 7 1.3178 2.3127 0.0015 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 -0.3634 0.5140 -0.8899 34 1 4.0230 0.3683 -0.0014 35 1 5.8765 0.6556 -0.0036 36 1 8.0757 2.1885 0.8852 37 1 8.0735 2.1903 -0.8947 38 1 8.0544 -0.2896 -0.8963 39 1 8.0565 -0.2906 0.8837 40 1 10.6316 1.9464 -1.3170 41 1 9.6640 0.6926 -2.1418 42 1 15.2094 -0.7700 -3.9988 43 1 12.3439 -1.7191 -0.9391 44 1 12.6285 -0.3161 0.1358 45 1 11.2824 -0.6299 2.1084 46 1 9.7652 -1.5583 2.0441 47 1 11.3094 -2.3479 1.6439 48 1 3.6806 4.6494 0.0120 49 1 0.7742 5.0268 1.0324 50 1 1.4941 5.5494 -0.5094 51 1 0.0510 4.5072 -0.5088 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103373123.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:13 Heat of formation + Delta-G solvation = -21.220806 kcal Electronic energy + Delta-G solvation = -29779.475240 eV Core-core repulsion = 25679.708257 eV Total energy + Delta-G solvation = -4099.766983 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.32339 -39.82405 -38.58786 -38.22327 -35.52899 -33.85584 -33.18322 -32.21191 -31.36988 -31.09246 -28.80282 -27.70528 -26.94783 -25.91740 -25.03094 -23.58319 -23.16255 -21.93284 -20.75393 -20.37837 -19.52358 -18.79157 -17.51081 -17.07364 -16.83539 -16.52867 -16.11683 -15.83771 -15.76987 -15.18631 -14.97864 -14.67816 -14.53239 -14.48915 -14.05624 -13.64302 -13.44802 -13.17075 -12.98232 -12.92544 -12.83414 -12.80547 -12.60027 -12.40543 -12.15276 -11.91359 -11.60707 -11.47634 -11.44660 -11.33747 -10.96030 -10.87769 -10.59890 -10.48825 -10.30991 -10.13500 -10.07908 -9.90984 -9.75290 -9.40770 -9.29218 -8.90824 -8.64954 -7.00161 -5.91964 -3.21830 0.25837 0.67669 2.53341 2.54633 2.81767 3.36118 3.36959 3.49752 3.52425 3.64945 4.20097 4.41970 4.53849 4.57256 4.64685 4.70244 4.83686 4.88786 4.92300 4.92675 4.96703 5.03797 5.09480 5.13530 5.20160 5.26524 5.40051 5.42382 5.44774 5.50116 5.52316 5.62030 5.72687 5.78455 5.84485 5.88427 5.96280 6.04510 6.10213 6.11031 6.22125 6.28073 6.41928 6.57657 6.68620 6.73333 6.83319 6.84358 7.16282 7.34318 7.75815 7.85520 8.34452 8.87181 9.72162 10.21970 11.24334 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018707 B = 0.001865 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.437880 B =15007.981885 C =15483.396813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.306 6.306 3 C 0.324 3.676 4 C -0.167 4.167 5 C -0.046 4.046 6 C 0.557 3.443 7 O -0.523 6.523 8 N -0.718 5.718 9 C 0.116 3.884 10 C -0.118 4.118 11 C -0.094 4.094 12 H 0.077 0.923 13 C 0.138 3.862 14 N -0.610 5.610 15 C -0.240 4.240 16 H 0.091 0.909 17 C 0.020 3.980 18 N -0.910 5.910 19 Si 0.883 3.117 20 H -0.285 1.285 21 H -0.303 1.303 22 H -0.277 1.277 23 C 0.116 3.884 24 C -0.100 4.100 25 H 0.079 0.921 26 C -0.140 4.140 27 C -0.154 4.154 28 C 0.166 3.834 29 C -0.105 4.105 30 N -0.528 5.528 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.146 0.854 35 H 0.401 0.599 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.030 0.970 41 H 0.033 0.967 42 H 0.263 0.737 43 H 0.057 0.943 44 H 0.025 0.975 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.054 0.946 48 H 0.152 0.848 49 H 0.083 0.917 50 H 0.082 0.918 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.429 2.861 12.647 32.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.212 6.212 3 C 0.145 3.855 4 C -0.189 4.189 5 C -0.057 4.057 6 C 0.342 3.658 7 O -0.399 6.399 8 N -0.370 5.370 9 C -0.006 4.006 10 C -0.156 4.156 11 C -0.113 4.113 12 H 0.095 0.905 13 C 0.013 3.987 14 N -0.336 5.336 15 C -0.367 4.367 16 H 0.109 0.891 17 C -0.178 4.178 18 N -0.554 5.554 19 Si 0.714 3.286 20 H -0.212 1.212 21 H -0.231 1.231 22 H -0.203 1.203 23 C -0.009 4.009 24 C -0.120 4.120 25 H 0.097 0.903 26 C -0.197 4.197 27 C -0.175 4.175 28 C 0.030 3.970 29 C -0.163 4.163 30 N -0.253 5.253 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.164 0.836 35 H 0.236 0.764 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.043 0.957 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.169 0.831 49 H 0.101 0.899 50 H 0.101 0.899 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -29.605 3.270 12.453 32.283 hybrid contribution 1.175 -0.487 0.820 1.513 sum -28.430 2.783 13.273 31.499 Atomic orbital electron populations 1.22892 0.76874 1.03185 1.02538 1.86263 1.23189 1.24049 1.87726 1.19593 0.88934 0.84743 0.92243 1.21169 0.92457 0.98448 1.06786 1.20187 0.93932 0.93171 0.98368 1.18038 0.85760 0.84736 0.77232 1.90812 1.74079 1.26236 1.48812 1.45983 1.07901 1.08649 1.74458 1.21579 0.77298 0.98523 1.03233 1.21786 0.95699 0.95342 1.02737 1.22178 0.92664 0.97434 0.99070 0.90460 1.21441 0.89474 0.94950 0.92838 1.44778 1.27182 1.42425 1.19260 1.18648 0.92505 1.37602 0.87963 0.89102 1.25003 0.96597 0.99840 0.96391 1.69844 1.13905 1.47076 1.24540 0.86970 0.78643 0.78084 0.84941 1.21233 1.23091 1.20298 1.22004 0.94212 0.94558 0.90131 1.22359 0.97872 0.96121 0.95629 0.90277 1.21710 1.01008 1.01328 0.95698 1.21952 0.93233 0.99944 1.02370 1.20926 0.91661 0.91889 0.92570 1.20782 0.99139 0.92739 1.03592 1.67006 1.41222 0.98499 1.18595 0.88401 0.92209 0.92167 0.83601 0.76356 0.91034 0.90416 0.90795 0.91290 0.95210 0.94916 0.92767 0.92494 0.95742 0.92779 0.92930 0.92731 0.83070 0.89866 0.89939 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.38 101.05 1.05 1.29 16 2 O -0.31 -2.70 10.47 -18.76 -0.20 -2.90 16 3 C 0.32 3.11 7.49 -17.16 -0.13 2.98 16 4 C -0.17 -1.48 9.55 -38.84 -0.37 -1.85 16 5 C -0.05 -0.46 5.91 -104.68 -0.62 -1.08 16 6 C 0.56 6.58 7.80 -12.19 -0.10 6.49 16 7 O -0.52 -8.03 16.44 5.36 0.09 -7.94 16 8 N -0.72 -7.11 5.51 -61.16 -0.34 -7.44 16 9 C 0.12 1.32 5.56 -4.05 -0.02 1.30 16 10 C -0.12 -1.29 4.74 -26.73 -0.13 -1.42 16 11 C -0.09 -1.39 2.38 -88.78 -0.21 -1.60 16 12 H 0.08 1.11 8.02 -51.93 -0.42 0.70 16 13 C 0.14 2.68 6.25 -3.06 -0.02 2.66 16 14 N -0.61 -14.84 3.21 -170.07 -0.55 -15.38 16 15 C -0.24 -6.91 10.57 -15.06 -0.16 -7.07 16 16 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 17 C 0.02 0.59 5.43 -17.43 -0.09 0.50 16 18 N -0.91 -28.41 13.97 55.49 0.78 -27.64 16 19 Si 0.88 22.94 24.27 -169.99 -4.13 18.81 16 20 H -0.29 -7.09 6.49 56.52 0.37 -6.72 16 21 H -0.30 -7.96 7.11 56.52 0.40 -7.55 16 22 H -0.28 -7.12 6.66 56.52 0.38 -6.75 16 23 C 0.12 2.51 4.16 -2.52 -0.01 2.50 16 24 C -0.10 -1.60 3.09 -88.47 -0.27 -1.87 16 25 H 0.08 1.23 8.05 -51.93 -0.42 0.81 16 26 C -0.14 -1.81 9.30 37.16 0.35 -1.47 16 27 C -0.15 -1.44 9.30 -39.03 -0.36 -1.80 16 28 C 0.17 1.41 6.77 -82.65 -0.56 0.85 16 29 C -0.11 -0.55 10.16 36.00 0.37 -0.19 16 30 N -0.53 -5.03 9.09 -9.60 -0.09 -5.12 16 31 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.35 8.10 -51.93 -0.42 -0.07 16 33 H 0.06 0.36 8.10 -51.93 -0.42 -0.06 16 34 H 0.15 0.96 6.53 -52.49 -0.34 0.61 16 35 H 0.40 2.89 6.61 -40.82 -0.27 2.62 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 1.02 7.69 -51.93 -0.40 0.62 16 38 H 0.07 0.82 7.95 -51.93 -0.41 0.40 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.03 0.63 7.70 -51.93 -0.40 0.23 16 42 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 43 H 0.06 1.33 6.64 -51.93 -0.34 0.98 16 44 H 0.03 0.56 5.47 -51.93 -0.28 0.28 16 45 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.15 1.33 7.74 -52.49 -0.41 0.92 16 49 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.08 0.33 8.08 -51.93 -0.42 -0.09 16 51 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 408.34 15.07 6.15 6.15 Total: -1.00 -35.26 408.34 -7.94 -43.20 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -8.38 Total: -1.97 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -1.29 Total: 0.22 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.19 Total: -55.58 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -0.11 Total: -10.83 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.13 Total: 18.81 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.26 -7.94 -43.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103373123.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.983 kcal (2) G-P(sol) polarization free energy of solvation -35.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds