Wall clock time and date at job start Wed Apr 1 2020 04:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35685 * 117.00136 * 2 1 4 4 C 1.38893 * 119.62526 * 180.02562 * 3 2 1 5 5 C 1.39571 * 118.95030 * 180.02562 * 4 3 2 6 6 C 1.48154 * 120.89382 * 180.02562 * 5 4 3 7 7 O 1.21510 * 120.00049 * 179.97438 * 6 5 4 8 8 N 1.34780 * 120.00345 * 0.02562 * 6 5 4 9 9 C 1.46497 * 120.00316 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.46857 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47006 * 179.97438 * 10 9 8 12 12 H 1.09005 * 110.63590 * 51.85907 * 11 10 9 13 13 C 1.54337 * 111.00569 * 288.78250 * 11 10 9 14 14 N 1.47015 * 107.26507 * 219.59972 * 13 11 10 15 15 C 1.36937 * 125.64768 * 178.84634 * 14 13 11 16 16 H 1.07996 * 119.99824 * 340.94235 * 15 14 13 17 17 C 1.38807 * 120.00250 * 161.21713 * 15 14 13 18 18 N 1.31620 * 120.00450 * 157.60272 * 17 15 14 19 19 Si 1.86801 * 119.99892 * 337.60961 * 17 15 14 20 20 H 1.48500 * 109.47209 * 84.53337 * 19 17 15 21 21 H 1.48506 * 109.47109 * 204.53340 * 19 17 15 22 22 H 1.48497 * 109.47176 * 324.53007 * 19 17 15 23 23 C 1.47427 * 108.70568 * 358.58089 * 14 13 11 24 24 C 1.54914 * 104.83009 * 24.35900 * 23 14 13 25 25 H 1.09007 * 111.00378 * 81.06227 * 24 23 14 26 26 C 1.52998 * 111.00145 * 204.87596 * 24 23 14 27 27 C 1.39971 * 118.21369 * 0.27233 * 5 4 3 28 28 C 1.37977 * 119.13360 * 359.48287 * 27 5 4 29 29 C 1.50696 * 119.51344 * 180.22981 * 28 27 5 30 30 N 1.31916 * 120.97917 * 0.53133 * 28 27 5 31 31 H 1.08995 * 109.46852 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46785 * 299.99202 * 1 2 3 33 33 H 1.09002 * 109.47277 * 59.99002 * 1 2 3 34 34 H 1.08000 * 120.52129 * 0.02562 * 4 3 2 35 35 H 0.97004 * 119.99395 * 359.97438 * 8 6 5 36 36 H 1.08994 * 109.46946 * 59.99649 * 9 8 6 37 37 H 1.09002 * 109.46746 * 299.99680 * 9 8 6 38 38 H 1.08994 * 109.47558 * 60.00110 * 10 9 8 39 39 H 1.09002 * 109.47253 * 299.99457 * 10 9 8 40 40 H 1.08994 * 109.98977 * 100.12069 * 13 11 10 41 41 H 1.08996 * 109.77507 * 338.95612 * 13 11 10 42 42 H 0.97000 * 120.00315 * 179.97438 * 18 17 15 43 43 H 1.08999 * 110.36487 * 143.19046 * 23 14 13 44 44 H 1.08995 * 110.37008 * 265.51818 * 23 14 13 45 45 H 1.08995 * 109.47287 * 58.54469 * 26 24 23 46 46 H 1.08999 * 109.47052 * 178.54557 * 26 24 23 47 47 H 1.08997 * 109.46887 * 298.54352 * 26 24 23 48 48 H 1.08002 * 120.43374 * 179.72708 * 27 5 4 49 49 H 1.09005 * 109.47371 * 270.30018 * 29 28 27 50 50 H 1.09003 * 109.46985 * 30.29560 * 29 28 27 51 51 H 1.09000 * 109.47230 * 150.29816 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4325 1.2725 -0.0005 5 6 4.0515 2.5235 0.0000 6 6 5.5283 2.6415 -0.0011 7 8 6.0502 3.7388 -0.0011 8 7 6.2931 1.5316 -0.0032 9 6 7.7534 1.6483 -0.0049 10 6 8.3766 0.2510 -0.0064 11 6 9.9018 0.3728 -0.0088 12 1 10.2358 1.0311 0.7932 13 6 10.4141 0.8799 -1.3735 14 7 11.6431 0.1346 -1.6824 15 6 12.3959 0.2723 -2.8180 16 1 11.9658 0.7248 -3.6993 17 6 13.7098 -0.1747 -2.8383 18 7 14.2911 -0.4580 -3.9847 19 14 14.6531 -0.3746 -1.2384 20 1 14.3498 -1.7027 -0.6474 21 1 16.1102 -0.2734 -1.5069 22 1 14.2495 0.6935 -0.2890 23 6 11.9345 -0.7810 -0.5643 24 6 10.5643 -1.0246 0.1161 25 1 9.9897 -1.7789 -0.4215 26 6 10.7432 -1.4185 1.5837 27 6 3.2395 3.6636 0.0070 28 6 1.8681 3.5116 0.0021 29 6 0.9858 4.7332 0.0042 30 7 1.3178 2.3127 0.0015 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 -0.3634 0.5140 -0.8899 34 1 4.0230 0.3683 -0.0014 35 1 5.8765 0.6556 -0.0036 36 1 8.0757 2.1885 0.8852 37 1 8.0735 2.1903 -0.8947 38 1 8.0544 -0.2896 -0.8963 39 1 8.0565 -0.2906 0.8837 40 1 10.6316 1.9464 -1.3170 41 1 9.6640 0.6926 -2.1418 42 1 15.2094 -0.7700 -3.9988 43 1 12.3439 -1.7191 -0.9391 44 1 12.6285 -0.3161 0.1358 45 1 11.2824 -0.6299 2.1084 46 1 9.7652 -1.5583 2.0441 47 1 11.3094 -2.3479 1.6439 48 1 3.6806 4.6494 0.0120 49 1 0.7742 5.0268 1.0324 50 1 1.4941 5.5494 -0.5094 51 1 0.0510 4.5072 -0.5088 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103373123.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:12 Heat of formation + Delta-G solvation = -47.351111 kcal Electronic energy + Delta-G solvation = -29780.608335 eV Core-core repulsion = 25679.708257 eV Total energy + Delta-G solvation = -4100.900078 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.02200 -40.70763 -39.95074 -38.91842 -36.62761 -35.16338 -34.36942 -33.04511 -32.83759 -32.41951 -29.33577 -29.02326 -27.63782 -27.43897 -26.16979 -24.71469 -23.80414 -23.28612 -21.88278 -21.64593 -20.75770 -19.52072 -18.93455 -18.17842 -17.83411 -17.18350 -17.12329 -16.90288 -16.74651 -16.62678 -16.33332 -15.53869 -15.27755 -15.23824 -15.19012 -14.97361 -14.65422 -14.52673 -14.40252 -14.20909 -13.72875 -13.41035 -13.38062 -13.30952 -13.08369 -12.98690 -12.90812 -12.74908 -12.66191 -12.48025 -12.30436 -12.13295 -12.03227 -11.74056 -11.55026 -11.45582 -11.27859 -11.16836 -11.03769 -10.80618 -10.77377 -10.19604 -9.54685 -9.04869 -8.20160 -5.46017 -0.47144 0.00820 1.27239 1.36082 1.45242 1.70575 1.84449 2.07492 2.39070 2.65574 3.02504 3.07227 3.34347 3.47941 3.59787 3.77895 3.83133 3.87633 3.93029 3.98356 4.17679 4.29642 4.36610 4.39511 4.43683 4.44602 4.53037 4.57605 4.59939 4.70546 4.76143 4.77333 4.77556 4.78891 4.85264 4.93609 4.96375 5.01832 5.04277 5.07528 5.11716 5.20796 5.31146 5.33384 5.34581 5.42961 5.57918 5.68256 6.08559 6.12155 6.36547 6.68386 6.76598 7.01480 7.53413 8.10841 8.99984 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018707 B = 0.001865 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.437880 B =15007.981885 C =15483.396813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.314 6.314 3 C 0.312 3.688 4 C -0.164 4.164 5 C -0.057 4.057 6 C 0.557 3.443 7 O -0.566 6.566 8 N -0.704 5.704 9 C 0.120 3.880 10 C -0.103 4.103 11 C -0.080 4.080 12 H 0.087 0.913 13 C 0.131 3.869 14 N -0.630 5.630 15 C -0.236 4.236 16 H 0.056 0.944 17 C -0.040 4.040 18 N -0.957 5.957 19 Si 0.949 3.051 20 H -0.267 1.267 21 H -0.307 1.307 22 H -0.273 1.273 23 C 0.105 3.895 24 C -0.088 4.088 25 H 0.087 0.913 26 C -0.135 4.135 27 C -0.163 4.163 28 C 0.163 3.837 29 C -0.103 4.103 30 N -0.536 5.536 31 H 0.123 0.877 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.169 0.831 35 H 0.417 0.583 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.019 0.981 41 H 0.032 0.968 42 H 0.262 0.738 43 H 0.034 0.966 44 H 0.020 0.980 45 H 0.053 0.947 46 H 0.087 0.913 47 H 0.056 0.944 48 H 0.152 0.848 49 H 0.096 0.904 50 H 0.094 0.906 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.744 1.679 15.635 35.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.221 6.221 3 C 0.133 3.867 4 C -0.185 4.185 5 C -0.067 4.067 6 C 0.344 3.656 7 O -0.445 6.445 8 N -0.356 5.356 9 C -0.003 4.003 10 C -0.141 4.141 11 C -0.099 4.099 12 H 0.105 0.895 13 C 0.006 3.994 14 N -0.357 5.357 15 C -0.364 4.364 16 H 0.073 0.927 17 C -0.234 4.234 18 N -0.604 5.604 19 Si 0.777 3.223 20 H -0.192 1.192 21 H -0.236 1.236 22 H -0.198 1.198 23 C -0.019 4.019 24 C -0.107 4.107 25 H 0.106 0.894 26 C -0.193 4.193 27 C -0.184 4.184 28 C 0.026 3.974 29 C -0.160 4.160 30 N -0.262 5.262 31 H 0.141 0.859 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.186 0.814 35 H 0.255 0.745 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.123 0.877 40 H 0.037 0.963 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.038 0.962 45 H 0.072 0.928 46 H 0.106 0.894 47 H 0.075 0.925 48 H 0.169 0.831 49 H 0.114 0.886 50 H 0.113 0.887 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -31.973 2.049 15.479 35.582 hybrid contribution 1.769 -0.087 -0.202 1.783 sum -30.204 1.962 15.277 33.905 Atomic orbital electron populations 1.23094 0.75533 1.04822 1.02403 1.86249 1.24566 1.23678 1.87606 1.19823 0.89393 0.85097 0.92422 1.21325 0.92521 0.98697 1.05936 1.20081 0.92871 0.94067 0.99687 1.18298 0.86526 0.84411 0.76383 1.90790 1.74928 1.27832 1.50986 1.45814 1.07265 1.09089 1.73395 1.21430 0.78078 0.98659 1.02150 1.21667 0.92468 0.95243 1.04707 1.22109 0.95188 0.96638 0.96002 0.89484 1.21664 0.87616 0.94141 0.95958 1.44936 1.27845 1.44109 1.18793 1.18600 0.93048 1.36003 0.88781 0.92651 1.25664 0.97590 1.00653 0.99532 1.69972 1.14220 1.49404 1.26797 0.85909 0.76561 0.78931 0.80876 1.19226 1.23578 1.19821 1.22168 0.97729 0.92699 0.89316 1.22322 0.94124 0.96837 0.97417 0.89434 1.21707 1.03195 1.01303 0.93074 1.22089 0.93756 0.99960 1.02629 1.21371 0.91771 0.92572 0.91639 1.20875 0.98818 0.91723 1.04622 1.67074 1.41522 0.98835 1.18775 0.85934 0.92215 0.92407 0.81397 0.74491 0.91063 0.92832 0.90407 0.87676 0.96276 0.94971 0.92874 0.94721 0.96239 0.92809 0.89377 0.92540 0.83062 0.88606 0.88700 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.38 113.37 1.18 1.54 16 2 O -0.31 -4.97 10.47 -90.03 -0.94 -5.92 16 3 C 0.31 5.50 7.49 84.80 0.63 6.14 16 4 C -0.16 -2.59 9.55 22.75 0.22 -2.37 16 5 C -0.06 -1.07 5.91 -19.90 -0.12 -1.19 16 6 C 0.56 12.63 7.80 86.88 0.68 13.31 16 7 O -0.57 -17.39 16.44 -3.75 -0.06 -17.45 16 8 N -0.70 -12.34 5.51 -465.69 -2.57 -14.91 16 9 C 0.12 2.47 5.56 86.38 0.48 2.95 16 10 C -0.10 -1.86 4.74 30.59 0.14 -1.72 16 11 C -0.08 -2.14 2.38 -9.60 -0.02 -2.16 16 12 H 0.09 2.21 8.02 -2.38 -0.02 2.19 16 13 C 0.13 5.03 6.25 86.73 0.54 5.57 16 14 N -0.63 -30.87 3.21 -691.99 -2.22 -33.09 16 15 C -0.24 -14.05 10.57 84.03 0.89 -13.16 16 16 H 0.06 3.59 8.06 -2.91 -0.02 3.57 16 17 C -0.04 -2.44 5.43 84.86 0.46 -1.98 16 18 N -0.96 -61.96 13.97 21.65 0.30 -61.66 16 19 Si 0.95 48.27 24.27 68.60 1.66 49.93 16 20 H -0.27 -12.61 6.49 99.48 0.65 -11.97 16 21 H -0.31 -15.72 7.11 99.48 0.71 -15.01 16 22 H -0.27 -13.50 6.66 99.48 0.66 -12.84 16 23 C 0.11 4.41 4.16 86.86 0.36 4.77 16 24 C -0.09 -2.51 3.09 -9.40 -0.03 -2.54 16 25 H 0.09 2.39 8.05 -2.38 -0.02 2.37 16 26 C -0.14 -2.87 9.30 71.98 0.67 -2.20 16 27 C -0.16 -2.95 9.30 22.63 0.21 -2.74 16 28 C 0.16 2.58 6.77 42.48 0.29 2.87 16 29 C -0.10 -0.93 10.16 71.23 0.72 -0.20 16 30 N -0.54 -9.54 9.09 -297.17 -2.70 -12.24 16 31 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.60 8.10 -2.39 -0.02 0.58 16 33 H 0.06 0.61 8.10 -2.39 -0.02 0.59 16 34 H 0.17 1.71 6.53 -2.91 -0.02 1.69 16 35 H 0.42 4.60 6.61 -92.71 -0.61 3.98 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 1.38 7.69 -2.39 -0.02 1.36 16 38 H 0.08 1.42 7.95 -2.39 -0.02 1.40 16 39 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.03 1.23 7.70 -2.39 -0.02 1.21 16 42 H 0.26 16.09 8.31 -92.71 -0.77 15.31 16 43 H 0.03 1.59 6.64 -2.39 -0.02 1.57 16 44 H 0.02 0.86 5.47 -2.39 -0.01 0.85 16 45 H 0.05 1.17 8.11 -2.39 -0.02 1.15 16 46 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.15 2.65 7.74 -2.91 -0.02 2.63 16 49 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 50 H 0.09 0.61 8.08 -2.39 -0.02 0.59 16 51 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -80.37 408.34 0.99 -79.38 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.21 Total: 9.06 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 7.31 Total: 6.89 kcal Atomic # 7 Polarization: -114.71 SS G_CDS: -7.19 Total: -121.89 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -1.00 Total: -23.36 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 1.66 Total: 49.93 kcal Total: -80.37 0.99 -79.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103373123.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.025 kcal (2) G-P(sol) polarization free energy of solvation -80.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds