Wall clock time and date at job start Wed Apr 1 2020 04:51:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.35685 * 117.00136 * 2 1
4 4 C 1.38893 * 119.62526 * 180.02562 * 3 2 1
5 5 C 1.39571 * 118.95030 * 180.02562 * 4 3 2
6 6 C 1.48154 * 120.89382 * 180.02562 * 5 4 3
7 7 O 1.21510 * 120.00049 * 179.97438 * 6 5 4
8 8 N 1.34780 * 120.00345 * 0.02562 * 6 5 4
9 9 C 1.46497 * 120.00316 * 179.97438 * 8 6 5
10 10 C 1.52996 * 109.46857 * 179.97438 * 9 8 6
11 11 C 1.53001 * 109.47006 * 179.97438 * 10 9 8
12 12 H 1.09005 * 110.63590 * 51.85907 * 11 10 9
13 13 C 1.54337 * 111.00569 * 288.78250 * 11 10 9
14 14 N 1.47015 * 107.26507 * 219.59972 * 13 11 10
15 15 C 1.36937 * 125.64768 * 178.84634 * 14 13 11
16 16 H 1.07996 * 119.99824 * 340.94235 * 15 14 13
17 17 C 1.38807 * 120.00250 * 161.21713 * 15 14 13
18 18 N 1.31620 * 120.00450 * 157.60272 * 17 15 14
19 19 Si 1.86801 * 119.99892 * 337.60961 * 17 15 14
20 20 H 1.48500 * 109.47209 * 84.53337 * 19 17 15
21 21 H 1.48506 * 109.47109 * 204.53340 * 19 17 15
22 22 H 1.48497 * 109.47176 * 324.53007 * 19 17 15
23 23 C 1.47427 * 108.70568 * 358.58089 * 14 13 11
24 24 C 1.54914 * 104.83009 * 24.35900 * 23 14 13
25 25 H 1.09007 * 111.00378 * 81.06227 * 24 23 14
26 26 C 1.52998 * 111.00145 * 204.87596 * 24 23 14
27 27 C 1.39971 * 118.21369 * 0.27233 * 5 4 3
28 28 C 1.37977 * 119.13360 * 359.48287 * 27 5 4
29 29 C 1.50696 * 119.51344 * 180.22981 * 28 27 5
30 30 N 1.31916 * 120.97917 * 0.53133 * 28 27 5
31 31 H 1.08995 * 109.46852 * 179.97438 * 1 2 3
32 32 H 1.09000 * 109.46785 * 299.99202 * 1 2 3
33 33 H 1.09002 * 109.47277 * 59.99002 * 1 2 3
34 34 H 1.08000 * 120.52129 * 0.02562 * 4 3 2
35 35 H 0.97004 * 119.99395 * 359.97438 * 8 6 5
36 36 H 1.08994 * 109.46946 * 59.99649 * 9 8 6
37 37 H 1.09002 * 109.46746 * 299.99680 * 9 8 6
38 38 H 1.08994 * 109.47558 * 60.00110 * 10 9 8
39 39 H 1.09002 * 109.47253 * 299.99457 * 10 9 8
40 40 H 1.08994 * 109.98977 * 100.12069 * 13 11 10
41 41 H 1.08996 * 109.77507 * 338.95612 * 13 11 10
42 42 H 0.97000 * 120.00315 * 179.97438 * 18 17 15
43 43 H 1.08999 * 110.36487 * 143.19046 * 23 14 13
44 44 H 1.08995 * 110.37008 * 265.51818 * 23 14 13
45 45 H 1.08995 * 109.47287 * 58.54469 * 26 24 23
46 46 H 1.08999 * 109.47052 * 178.54557 * 26 24 23
47 47 H 1.08997 * 109.46887 * 298.54352 * 26 24 23
48 48 H 1.08002 * 120.43374 * 179.72708 * 27 5 4
49 49 H 1.09005 * 109.47371 * 270.30018 * 29 28 27
50 50 H 1.09003 * 109.46985 * 30.29560 * 29 28 27
51 51 H 1.09000 * 109.47230 * 150.29816 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0451 1.2089 0.0000
4 6 3.4325 1.2725 -0.0005
5 6 4.0515 2.5235 0.0000
6 6 5.5283 2.6415 -0.0011
7 8 6.0502 3.7388 -0.0011
8 7 6.2931 1.5316 -0.0032
9 6 7.7534 1.6483 -0.0049
10 6 8.3766 0.2510 -0.0064
11 6 9.9018 0.3728 -0.0088
12 1 10.2358 1.0311 0.7932
13 6 10.4141 0.8799 -1.3735
14 7 11.6431 0.1346 -1.6824
15 6 12.3959 0.2723 -2.8180
16 1 11.9658 0.7248 -3.6993
17 6 13.7098 -0.1747 -2.8383
18 7 14.2911 -0.4580 -3.9847
19 14 14.6531 -0.3746 -1.2384
20 1 14.3498 -1.7027 -0.6474
21 1 16.1102 -0.2734 -1.5069
22 1 14.2495 0.6935 -0.2890
23 6 11.9345 -0.7810 -0.5643
24 6 10.5643 -1.0246 0.1161
25 1 9.9897 -1.7789 -0.4215
26 6 10.7432 -1.4185 1.5837
27 6 3.2395 3.6636 0.0070
28 6 1.8681 3.5116 0.0021
29 6 0.9858 4.7332 0.0042
30 7 1.3178 2.3127 0.0015
31 1 -0.3633 -1.0276 -0.0005
32 1 -0.3633 0.5137 0.8901
33 1 -0.3634 0.5140 -0.8899
34 1 4.0230 0.3683 -0.0014
35 1 5.8765 0.6556 -0.0036
36 1 8.0757 2.1885 0.8852
37 1 8.0735 2.1903 -0.8947
38 1 8.0544 -0.2896 -0.8963
39 1 8.0565 -0.2906 0.8837
40 1 10.6316 1.9464 -1.3170
41 1 9.6640 0.6926 -2.1418
42 1 15.2094 -0.7700 -3.9988
43 1 12.3439 -1.7191 -0.9391
44 1 12.6285 -0.3161 0.1358
45 1 11.2824 -0.6299 2.1084
46 1 9.7652 -1.5583 2.0441
47 1 11.3094 -2.3479 1.6439
48 1 3.6806 4.6494 0.0120
49 1 0.7742 5.0268 1.0324
50 1 1.4941 5.5494 -0.5094
51 1 0.0510 4.5072 -0.5088
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001103373123.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:51:12
Heat of formation + Delta-G solvation = -47.351111 kcal
Electronic energy + Delta-G solvation = -29780.608335 eV
Core-core repulsion = 25679.708257 eV
Total energy + Delta-G solvation = -4100.900078 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-42.02200 -40.70763 -39.95074 -38.91842 -36.62761 -35.16338 -34.36942 -33.04511
-32.83759 -32.41951 -29.33577 -29.02326 -27.63782 -27.43897 -26.16979 -24.71469
-23.80414 -23.28612 -21.88278 -21.64593 -20.75770 -19.52072 -18.93455 -18.17842
-17.83411 -17.18350 -17.12329 -16.90288 -16.74651 -16.62678 -16.33332 -15.53869
-15.27755 -15.23824 -15.19012 -14.97361 -14.65422 -14.52673 -14.40252 -14.20909
-13.72875 -13.41035 -13.38062 -13.30952 -13.08369 -12.98690 -12.90812 -12.74908
-12.66191 -12.48025 -12.30436 -12.13295 -12.03227 -11.74056 -11.55026 -11.45582
-11.27859 -11.16836 -11.03769 -10.80618 -10.77377 -10.19604 -9.54685 -9.04869
-8.20160 -5.46017 -0.47144 0.00820 1.27239 1.36082 1.45242 1.70575
1.84449 2.07492 2.39070 2.65574 3.02504 3.07227 3.34347 3.47941
3.59787 3.77895 3.83133 3.87633 3.93029 3.98356 4.17679 4.29642
4.36610 4.39511 4.43683 4.44602 4.53037 4.57605 4.59939 4.70546
4.76143 4.77333 4.77556 4.78891 4.85264 4.93609 4.96375 5.01832
5.04277 5.07528 5.11716 5.20796 5.31146 5.33384 5.34581 5.42961
5.57918 5.68256 6.08559 6.12155 6.36547 6.68386 6.76598 7.01480
7.53413 8.10841 8.99984
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.018707 B = 0.001865 C = 0.001808
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1496.437880 B =15007.981885 C =15483.396813
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.036 3.964
2 O -0.314 6.314
3 C 0.312 3.688
4 C -0.164 4.164
5 C -0.057 4.057
6 C 0.557 3.443
7 O -0.566 6.566
8 N -0.704 5.704
9 C 0.120 3.880
10 C -0.103 4.103
11 C -0.080 4.080
12 H 0.087 0.913
13 C 0.131 3.869
14 N -0.630 5.630
15 C -0.236 4.236
16 H 0.056 0.944
17 C -0.040 4.040
18 N -0.957 5.957
19 Si 0.949 3.051
20 H -0.267 1.267
21 H -0.307 1.307
22 H -0.273 1.273
23 C 0.105 3.895
24 C -0.088 4.088
25 H 0.087 0.913
26 C -0.135 4.135
27 C -0.163 4.163
28 C 0.163 3.837
29 C -0.103 4.103
30 N -0.536 5.536
31 H 0.123 0.877
32 H 0.059 0.941
33 H 0.057 0.943
34 H 0.169 0.831
35 H 0.417 0.583
36 H 0.071 0.929
37 H 0.053 0.947
38 H 0.077 0.923
39 H 0.105 0.895
40 H 0.019 0.981
41 H 0.032 0.968
42 H 0.262 0.738
43 H 0.034 0.966
44 H 0.020 0.980
45 H 0.053 0.947
46 H 0.087 0.913
47 H 0.056 0.944
48 H 0.152 0.848
49 H 0.096 0.904
50 H 0.094 0.906
51 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -31.744 1.679 15.635 35.425
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 O -0.221 6.221
3 C 0.133 3.867
4 C -0.185 4.185
5 C -0.067 4.067
6 C 0.344 3.656
7 O -0.445 6.445
8 N -0.356 5.356
9 C -0.003 4.003
10 C -0.141 4.141
11 C -0.099 4.099
12 H 0.105 0.895
13 C 0.006 3.994
14 N -0.357 5.357
15 C -0.364 4.364
16 H 0.073 0.927
17 C -0.234 4.234
18 N -0.604 5.604
19 Si 0.777 3.223
20 H -0.192 1.192
21 H -0.236 1.236
22 H -0.198 1.198
23 C -0.019 4.019
24 C -0.107 4.107
25 H 0.106 0.894
26 C -0.193 4.193
27 C -0.184 4.184
28 C 0.026 3.974
29 C -0.160 4.160
30 N -0.262 5.262
31 H 0.141 0.859
32 H 0.078 0.922
33 H 0.076 0.924
34 H 0.186 0.814
35 H 0.255 0.745
36 H 0.089 0.911
37 H 0.072 0.928
38 H 0.096 0.904
39 H 0.123 0.877
40 H 0.037 0.963
41 H 0.050 0.950
42 H 0.071 0.929
43 H 0.053 0.947
44 H 0.038 0.962
45 H 0.072 0.928
46 H 0.106 0.894
47 H 0.075 0.925
48 H 0.169 0.831
49 H 0.114 0.886
50 H 0.113 0.887
51 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -31.973 2.049 15.479 35.582
hybrid contribution 1.769 -0.087 -0.202 1.783
sum -30.204 1.962 15.277 33.905
Atomic orbital electron populations
1.23094 0.75533 1.04822 1.02403 1.86249 1.24566 1.23678 1.87606
1.19823 0.89393 0.85097 0.92422 1.21325 0.92521 0.98697 1.05936
1.20081 0.92871 0.94067 0.99687 1.18298 0.86526 0.84411 0.76383
1.90790 1.74928 1.27832 1.50986 1.45814 1.07265 1.09089 1.73395
1.21430 0.78078 0.98659 1.02150 1.21667 0.92468 0.95243 1.04707
1.22109 0.95188 0.96638 0.96002 0.89484 1.21664 0.87616 0.94141
0.95958 1.44936 1.27845 1.44109 1.18793 1.18600 0.93048 1.36003
0.88781 0.92651 1.25664 0.97590 1.00653 0.99532 1.69972 1.14220
1.49404 1.26797 0.85909 0.76561 0.78931 0.80876 1.19226 1.23578
1.19821 1.22168 0.97729 0.92699 0.89316 1.22322 0.94124 0.96837
0.97417 0.89434 1.21707 1.03195 1.01303 0.93074 1.22089 0.93756
0.99960 1.02629 1.21371 0.91771 0.92572 0.91639 1.20875 0.98818
0.91723 1.04622 1.67074 1.41522 0.98835 1.18775 0.85934 0.92215
0.92407 0.81397 0.74491 0.91063 0.92832 0.90407 0.87676 0.96276
0.94971 0.92874 0.94721 0.96239 0.92809 0.89377 0.92540 0.83062
0.88606 0.88700 0.89758
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.36 10.38 113.37 1.18 1.54 16
2 O -0.31 -4.97 10.47 -90.03 -0.94 -5.92 16
3 C 0.31 5.50 7.49 84.80 0.63 6.14 16
4 C -0.16 -2.59 9.55 22.75 0.22 -2.37 16
5 C -0.06 -1.07 5.91 -19.90 -0.12 -1.19 16
6 C 0.56 12.63 7.80 86.88 0.68 13.31 16
7 O -0.57 -17.39 16.44 -3.75 -0.06 -17.45 16
8 N -0.70 -12.34 5.51 -465.69 -2.57 -14.91 16
9 C 0.12 2.47 5.56 86.38 0.48 2.95 16
10 C -0.10 -1.86 4.74 30.59 0.14 -1.72 16
11 C -0.08 -2.14 2.38 -9.60 -0.02 -2.16 16
12 H 0.09 2.21 8.02 -2.38 -0.02 2.19 16
13 C 0.13 5.03 6.25 86.73 0.54 5.57 16
14 N -0.63 -30.87 3.21 -691.99 -2.22 -33.09 16
15 C -0.24 -14.05 10.57 84.03 0.89 -13.16 16
16 H 0.06 3.59 8.06 -2.91 -0.02 3.57 16
17 C -0.04 -2.44 5.43 84.86 0.46 -1.98 16
18 N -0.96 -61.96 13.97 21.65 0.30 -61.66 16
19 Si 0.95 48.27 24.27 68.60 1.66 49.93 16
20 H -0.27 -12.61 6.49 99.48 0.65 -11.97 16
21 H -0.31 -15.72 7.11 99.48 0.71 -15.01 16
22 H -0.27 -13.50 6.66 99.48 0.66 -12.84 16
23 C 0.11 4.41 4.16 86.86 0.36 4.77 16
24 C -0.09 -2.51 3.09 -9.40 -0.03 -2.54 16
25 H 0.09 2.39 8.05 -2.38 -0.02 2.37 16
26 C -0.14 -2.87 9.30 71.98 0.67 -2.20 16
27 C -0.16 -2.95 9.30 22.63 0.21 -2.74 16
28 C 0.16 2.58 6.77 42.48 0.29 2.87 16
29 C -0.10 -0.93 10.16 71.23 0.72 -0.20 16
30 N -0.54 -9.54 9.09 -297.17 -2.70 -12.24 16
31 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16
32 H 0.06 0.60 8.10 -2.39 -0.02 0.58 16
33 H 0.06 0.61 8.10 -2.39 -0.02 0.59 16
34 H 0.17 1.71 6.53 -2.91 -0.02 1.69 16
35 H 0.42 4.60 6.61 -92.71 -0.61 3.98 16
36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16
37 H 0.05 1.38 7.69 -2.39 -0.02 1.36 16
38 H 0.08 1.42 7.95 -2.39 -0.02 1.40 16
39 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16
40 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16
41 H 0.03 1.23 7.70 -2.39 -0.02 1.21 16
42 H 0.26 16.09 8.31 -92.71 -0.77 15.31 16
43 H 0.03 1.59 6.64 -2.39 -0.02 1.57 16
44 H 0.02 0.86 5.47 -2.39 -0.01 0.85 16
45 H 0.05 1.17 8.11 -2.39 -0.02 1.15 16
46 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16
47 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16
48 H 0.15 2.65 7.74 -2.91 -0.02 2.63 16
49 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16
50 H 0.09 0.61 8.08 -2.39 -0.02 0.59 16
51 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16
Total: -1.00 -80.37 408.34 0.99 -79.38
By element:
Atomic # 1 Polarization: 8.85 SS G_CDS: 0.21 Total: 9.06 kcal
Atomic # 6 Polarization: -0.41 SS G_CDS: 7.31 Total: 6.89 kcal
Atomic # 7 Polarization: -114.71 SS G_CDS: -7.19 Total: -121.89 kcal
Atomic # 8 Polarization: -22.36 SS G_CDS: -1.00 Total: -23.36 kcal
Atomic # 14 Polarization: 48.27 SS G_CDS: 1.66 Total: 49.93 kcal
Total: -80.37 0.99 -79.38 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001103373123.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.025 kcal
(2) G-P(sol) polarization free energy of solvation -80.368 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.343 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.376 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.351 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds